05:05:12 21 Sep 2015 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:05:14 21 Sep 2015 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:05:14 21 Sep 2015 UTC: INFO: Base.py(1577): No new selftests to processed 05:05:14 21 Sep 2015 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:05:14 21 Sep 2015 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:05:14 21 Sep 2015 UTC: INFO: Base.py(1602): Processing dive(s) 05:05:15 21 Sep 2015 UTC: WARNING: Base.py(1613): No fragment size found for 262 - using 4096 as default 05:05:15 21 Sep 2015 UTC: INFO: Base.py(265): fragment_size = 4096 05:05:15 21 Sep 2015 UTC: INFO: Base.py(368): Processing ./sg0277kz 05:05:15 21 Sep 2015 UTC: INFO: Base.py(687): Checking fragment ./sg0277kz.1a.x00 05:05:15 21 Sep 2015 UTC: INFO: Base.py(687): Checking fragment ./sg0277kz.1a.x01 05:05:15 21 Sep 2015 UTC: INFO: Base.py(687): Checking fragment ./sg0277kz.1a.x02 05:05:15 21 Sep 2015 UTC: INFO: Base.py(687): Checking fragment ./sg0277kz.1a.x03 05:05:15 21 Sep 2015 UTC: INFO: Base.py(472): Processing ./sg0277kz.r in process_file_group 05:05:15 21 Sep 2015 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0277kz.r - expected 0x117279954, generated 0xc36e7e0f 05:05:15 21 Sep 2015 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0277kz.r - expected 0xb3eb0c84, generated 0xef92 05:05:15 21 Sep 2015 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0277kz.r - skipping 05:05:15 21 Sep 2015 UTC: ERROR: Base.py(272): Could not process sg0277kz - skipping 05:05:15 21 Sep 2015 UTC: WARNING: Base.py(1624): No dives to process 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1656): Dives to process = [] 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1780): No dives found to profile 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.321.11 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:05:15 21 Sep 2015 UTC: ERROR: Error processing WETLabsCalData_wlbb2f_calinfo = 'SN BB2F-VMG-398, CAL:26-Sep-2014' in sg_calib_constants: Traceback (most recent call last): File "/usr/local/basestation/CalibConst.py", line 130, in getSGCalibrationConstants value = float(eval(value, None, eval_locals)) File "", line 1 SN BB2F-VMG-398, CAL:26-Sep-2014 ^ SyntaxError: invalid syntax 05:05:15 21 Sep 2015 UTC: INFO: CalibConst.py(133): Continuing... 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:05:15 21 Sep 2015 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:05:15 21 Sep 2015 UTC: ERROR: Base.py(1960): Dive [277] failed to process completely. The following files were not processed completely: /home/sg146/sg0277kz.r Glider logout seen - transmissions from glider complete Consult baselog_150920190501 for details. 05:05:15 21 Sep 2015 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (8082303076,recov,alerts) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,alerts,recov) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (searson@hawaii.edu,gps,alerts,recov) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(991): Finished processing on .pagers 05:05:15 21 Sep 2015 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (8082303076,recov,alerts) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,gps,alerts,recov) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:05:15 21 Sep 2015 UTC: INFO: Base.py(913): Processing .pagers line (searson@hawaii.edu,gps,alerts,recov) 05:05:16 21 Sep 2015 UTC: INFO: Base.py(991): Finished processing on .pagers 05:05:16 21 Sep 2015 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:05:16 21 Sep 2015 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:05:16 21 Sep 2015 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:05:16 21 Sep 2015 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:05:16 21 Sep 2015 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:05:16 21 Sep 2015 UTC: INFO: Base.py(2265): Finished processing 05:05:16 21 Sep 2015 UTC 22:18:21 02 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 5632 22:18:21 02 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:18:49 02 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 5707 22:18:49 02 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:18:49 02 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:18:49 02 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:18:49 02 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160302121848 ] 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1333): PID:5714 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1375): Started processing 22:18:49 02 Mar 2016 UTC 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:18:49 02 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:18:49 02 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:18:49 02 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 22:18:49 02 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 22:18:49 02 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 22:18:49 02 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:18:49 02 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.321.11 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.321.11 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.321.11 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:18:49 02 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:18:49 02 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:18:49 02 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:49 02 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:18:49 02 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:18:49 02 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:18:49 02 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:18:49 02 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:18:49 02 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:18:49 02 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 22:18:49 02 Mar 2016 UTC 22:19:27 02 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 5876 22:19:27 02 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:20:30 02 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 6033 22:20:30 02 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:20:30 02 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:20:30 02 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:20:30 02 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160302122029 ] 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1333): PID:6048 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1375): Started processing 22:20:30 02 Mar 2016 UTC 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:20:30 02 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:20:30 02 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:20:30 02 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 22:20:30 02 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 22:20:30 02 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 22:20:30 02 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:20:30 02 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.321.11 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.321.11 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.321.11 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:20:30 02 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:20:30 02 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:20:30 02 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:30 02 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:20:30 02 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:20:30 02 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:20:30 02 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:20:30 02 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:20:30 02 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:20:30 02 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 22:20:30 02 Mar 2016 UTC 22:22:29 02 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 6269 22:22:29 02 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:05:47 03 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7104 22:05:47 03 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:09:13 03 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7194 22:09:13 03 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:09:13 03 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:09:13 03 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:09:13 03 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160303120912 ] 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1333): PID:7202 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1375): Started processing 22:09:13 03 Mar 2016 UTC 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:09:13 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:09:13 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:09:13 03 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 22:09:13 03 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:0 2118.9740 -15753.2600 03/03/16 22:04:34 UTC Reboot occured between 321:11:2:0:11:256 and 0:0:1:0:12:321) to sdrifter@soest.hawaii.edu 22:09:13 03 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 22:09:13 03 Mar 2016 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:1 call_cycle:0 2118.9740 -15753.2600 03/03/16 22:04:34 UTC Reboot occured between 321:11:2:0:11:256 and 0:0:1:0:12:321) to sdrifter@soest.hawaii.edu 22:09:13 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:09:13 03 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:09:13 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:09:13 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:09:13 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:13 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:09:13 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:09:13 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:09:13 03 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:09:13 03 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:09:13 03 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:09:13 03 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 22:09:13 03 Mar 2016 UTC 22:14:02 03 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7445 22:14:02 03 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:16:49 03 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7532 22:16:49 03 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:16:49 03 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:16:49 03 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:16:49 03 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160303121648 ] 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1333): PID:7539 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1375): Started processing 22:16:49 03 Mar 2016 UTC 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:16:49 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:16:49 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:16:49 03 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:0 22:16:49 03 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:0 2118.9740 -15753.2600 03/03/16 22:04:34 UTC) to sdrifter@soest.hawaii.edu 22:16:49 03 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:0 22:16:49 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:16:49 03 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 22:16:49 03 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000kl 22:16:49 03 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000kl.x 22:16:49 03 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000kl.b.1a.x 22:16:49 03 Mar 2016 UTC: WARNING: Base.py(727): Final fragment /home/sg146/sg0000kl.b.1a.x size (14197) is too big, expected less than or equal to 4096. 22:16:49 03 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:16:49 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:16:49 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:16:49 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:16:49 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:16:49 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:16:49 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:16:49 03 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:16:49 03 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:16:49 03 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:16:49 03 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 22:16:49 03 Mar 2016 UTC 22:23:15 03 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7799 22:23:16 03 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 22:25:07 03 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7877 22:25:07 03 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:25:07 03 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:25:07 03 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:25:07 03 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160303122506 ] 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1333): PID:7884 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1375): Started processing 22:25:07 03 Mar 2016 UTC 22:25:07 03 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:25:07 03 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:25:07 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:25:07 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:25:07 03 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 22:25:07 03 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 22:25:07 03 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 22:25:07 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:25:07 03 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:25:07 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:25:07 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:25:07 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:07 03 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:25:07 03 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:25:07 03 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:25:07 03 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:25:07 03 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:25:07 03 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:25:07 03 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 22:25:07 03 Mar 2016 UTC 20:01:15 16 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 15468 20:01:15 16 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:03:28 16 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 15615 20:03:28 16 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:03:28 16 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 20:03:28 16 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 20:03:28 16 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:03:28 16 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160316100327 ] 20:03:28 16 Mar 2016 UTC: INFO: Base.py(1333): PID:15622 20:03:28 16 Mar 2016 UTC: INFO: Base.py(1375): Started processing 20:03:28 16 Mar 2016 UTC 20:03:28 16 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 20:03:28 16 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 20:03:28 16 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 20:03:28 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:03:28 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:03:28 16 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 20:03:28 16 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:0 2118.9670 -15753.2440 03/16/16 20:00:04 UTC Reboot occured between 0:0:2:0:12:321 and 0:0:1:0:12:322) to sdrifter@soest.hawaii.edu 20:03:28 16 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 20:03:28 16 Mar 2016 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:1 call_cycle:0 2118.9670 -15753.2440 03/16/16 20:00:04 UTC Reboot occured between 0:0:2:0:12:321 and 0:0:1:0:12:322) to sdrifter@soest.hawaii.edu 20:03:28 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:03:28 16 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 20:03:29 16 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 20:03:29 16 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000kl 20:03:29 16 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0000kl.1a.x 20:03:29 16 Mar 2016 UTC: WARNING: Base.py(727): Final fragment ./sg0000kl.1a.x size (6249) is too big, expected less than or equal to 4096. 20:03:29 16 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:03:29 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:03:29 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:03:29 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:03:29 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:03:29 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:03:29 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:03:29 16 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 20:03:29 16 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:03:29 16 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:03:29 16 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 20:03:29 16 Mar 2016 UTC 20:11:23 16 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 15919 20:11:23 16 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:12:56 16 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 15990 20:12:56 16 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:12:56 16 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 20:12:56 16 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 20:12:56 16 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:12:56 16 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160316101256 ] 20:12:56 16 Mar 2016 UTC: INFO: Base.py(1333): PID:15997 20:12:56 16 Mar 2016 UTC: INFO: Base.py(1375): Started processing 20:12:56 16 Mar 2016 UTC 20:12:56 16 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 20:12:56 16 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 20:12:56 16 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 20:12:56 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:12:56 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:12:56 16 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 20:12:56 16 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:1 2118.9650 -15753.2420 03/16/16 20:10:12 UTC) to sdrifter@soest.hawaii.edu 20:12:57 16 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 20:12:57 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 20:12:57 16 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000lz 20:12:57 16 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000lz.x00 20:12:57 16 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000lz.b.1a.x00 20:12:57 16 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000lz.r in process_file_group 20:12:57 16 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460000.log 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [0] 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.1 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.1 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.1 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:12:57 16 Mar 2016 UTC /home/sg146/p1460000.log 20:12:57 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:12:57 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:12:57 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:12:57 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:12:57 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:12:57 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:12:57 16 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 20:12:57 16 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:12:57 16 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:12:57 16 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 20:12:57 16 Mar 2016 UTC 20:15:00 16 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 16156 20:15:00 16 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:16:38 16 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 16224 20:16:38 16 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:16:38 16 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 20:16:38 16 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 20:16:38 16 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160316101637 ] 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1333): PID:16231 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1375): Started processing 20:16:38 16 Mar 2016 UTC 20:16:38 16 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 20:16:38 16 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 20:16:38 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:16:38 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:16:38 16 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:2 2118.9620 -15753.2430 03/16/16 20:13:42 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:16:38 16 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:2 2118.9620 -15753.2430 03/16/16 20:13:42 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 20:16:38 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 20:16:38 16 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:16:38 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:16:38 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:16:38 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:16:38 16 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:16:38 16 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:16:38 16 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:16:38 16 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 20:16:38 16 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:16:38 16 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 20:16:38 16 Mar 2016 UTC 00:52:05 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17241 00:52:05 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:55:08 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17367 00:55:08 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:55:08 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:55:08 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:55:08 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322145507 ] 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1333): PID:17374 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 00:55:08 23 Mar 2016 UTC 00:55:08 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:55:08 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:55:08 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:55:08 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:55:08 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 00:55:08 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:0 2118.9340 -15753.1910 03/23/16 00:50:58 UTC Reboot occured between 0:2:1:0:12:322 and 0:0:1:0:12:331) to sdrifter@soest.hawaii.edu 00:55:08 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:0 00:55:08 23 Mar 2016 UTC: INFO: Base.py(975): Sending REBOOTED (dive:0 calls_made:1 call_cycle:0 2118.9340 -15753.1910 03/23/16 00:50:58 UTC Reboot occured between 0:2:1:0:12:322 and 0:0:1:0:12:331) to sdrifter@soest.hawaii.edu 00:55:08 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:55:08 23 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:55:08 23 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000kl 00:55:08 23 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000kl.x 00:55:08 23 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000kl.b.1a.x 00:55:08 23 Mar 2016 UTC: WARNING: Base.py(727): Final fragment /home/sg146/sg0000kl.b.1a.x size (12616) is too big, expected less than or equal to 4096. 00:55:08 23 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:55:08 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:55:08 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:55:08 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:55:08 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:55:08 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:55:08 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:55:08 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:55:08 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:55:08 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:55:08 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 00:55:08 23 Mar 2016 UTC 00:58:20 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17549 00:58:20 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:00:16 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17684 01:00:16 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:00:16 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:00:16 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:00:16 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322150015 ] 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1333): PID:17691 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:00:16 23 Mar 2016 UTC 01:00:16 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:00:16 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:00:16 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:00:16 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:00:16 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:1 2118.9290 -15753.1940 03/23/16 00:57:04 UTC) to sdrifter@soest.hawaii.edu 01:00:16 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:00:16 23 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000lz 01:00:16 23 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000lz.x00 01:00:16 23 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000lz.b.1a.x00 01:00:16 23 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000lz.r in process_file_group 01:00:16 23 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460000.log 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [0] 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:00:16 23 Mar 2016 UTC /home/sg146/p1460000.log 01:00:16 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:00:16 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:00:16 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:00:16 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:00:16 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:00:16 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:00:16 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:00:16 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:00:16 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:00:16 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:00:16 23 Mar 2016 UTC 01:02:16 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17932 01:02:16 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:03:40 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17994 01:03:40 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:03:40 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:03:40 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:03:40 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:03:40 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322150340 ] 01:03:40 23 Mar 2016 UTC: INFO: Base.py(1333): PID:18001 01:03:40 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:03:40 23 Mar 2016 UTC 01:03:40 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:03:40 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:03:40 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:03:40 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:03:40 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:03:40 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 01:03:40 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:2 2118.9330 -15753.1890 03/23/16 01:01:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:03:41 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:2 01:03:41 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:2 2118.9330 -15753.1890 03/23/16 01:01:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:03:41 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:03:41 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.2 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.2 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.2 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:03:41 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:03:41 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:03:41 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:03:41 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:03:41 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:03:41 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:03:41 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:03:41 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:03:41 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:03:41 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:03:41 23 Mar 2016 UTC 01:10:37 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18301 01:10:37 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:11:57 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18362 01:11:57 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:11:57 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:11:57 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:11:57 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322151156 ] 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1333): PID:18369 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:11:57 23 Mar 2016 UTC 01:11:57 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:11:57 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:11:57 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:11:57 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:11:57 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:3 01:11:57 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:2 call_cycle:3 2118.9360 -15753.1910 03/23/16 01:07:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:11:57 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:2 call_cycle:3 01:11:57 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:2 call_cycle:3 2118.9360 -15753.1910 03/23/16 01:07:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:11:57 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:11:57 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.3 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.3 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.3 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:11:57 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:11:57 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:11:57 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:11:57 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:11:57 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:11:57 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:11:57 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:11:57 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:11:57 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:11:57 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:11:57 23 Mar 2016 UTC 01:16:55 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18770 01:16:55 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:18:17 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18841 01:18:17 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:18:17 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:18:17 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:18:17 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322151816 ] 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1333): PID:18848 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:18:17 23 Mar 2016 UTC 01:18:17 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:18:17 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:18:17 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:18:17 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:18:17 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:4 01:18:17 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:4 2118.9310 -15753.1900 03/23/16 01:15:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:18:17 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:4 01:18:17 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:4 2118.9310 -15753.1900 03/23/16 01:15:43 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:18:17 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:18:17 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.4 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.4 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.4 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:18:17 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:18:17 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:18:17 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:17 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:18:17 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:18:17 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:18:17 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:18:17 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:18:17 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:18:17 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:18:17 23 Mar 2016 UTC 01:23:18 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19308 01:23:18 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:24:41 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19368 01:24:41 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:24:41 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:24:41 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:24:41 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322152440 ] 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1333): PID:19375 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:24:41 23 Mar 2016 UTC 01:24:41 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:24:41 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:24:41 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:24:41 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:24:41 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:5 01:24:41 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:5 2118.9330 -15753.1890 03/23/16 01:22:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:24:41 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:5 01:24:41 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:5 2118.9330 -15753.1890 03/23/16 01:22:01 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:24:41 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:24:41 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.5 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.5 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.5 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:24:41 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:24:41 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:24:41 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:41 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:24:41 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:24:41 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:24:41 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:24:41 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:24:41 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:24:41 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:24:41 23 Mar 2016 UTC 01:29:14 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19773 01:29:14 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:30:34 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19900 01:30:34 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:30:34 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:30:34 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:30:34 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322153033 ] 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1333): PID:19907 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:30:34 23 Mar 2016 UTC 01:30:34 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:30:34 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:30:34 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:30:34 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:30:34 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:6 01:30:34 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:6 2118.9270 -15753.1940 03/23/16 01:28:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:30:34 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:6 01:30:34 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:6 2118.9270 -15753.1940 03/23/16 01:28:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:30:34 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:30:34 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.6 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.6 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.6 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:30:34 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:30:34 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:30:34 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:30:34 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:30:34 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:30:34 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:30:34 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:30:34 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:30:34 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:30:34 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:30:34 23 Mar 2016 UTC 01:35:04 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 20522 01:35:04 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:36:19 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 20630 01:36:19 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:36:19 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:36:19 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:36:19 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322153619 ] 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1333): PID:20663 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:36:19 23 Mar 2016 UTC 01:36:19 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:36:19 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:36:19 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:36:19 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:36:19 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:7 01:36:19 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:7 2118.9330 -15753.1940 03/23/16 01:33:59 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:36:19 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:7 01:36:19 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:7 2118.9330 -15753.1940 03/23/16 01:33:59 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:36:19 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:36:19 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.7 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.7 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.7 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:36:19 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:36:19 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:36:19 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:36:19 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:36:19 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:36:19 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:36:19 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:36:19 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:36:19 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:36:19 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:36:19 23 Mar 2016 UTC 03:38:26 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23854 03:38:26 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:39:43 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23913 03:39:43 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:39:43 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:39:43 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:39:43 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:39:43 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322173943 ] 03:39:43 23 Mar 2016 UTC: INFO: Base.py(1333): PID:23920 03:39:43 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:39:43 23 Mar 2016 UTC 03:39:43 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:39:43 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:39:43 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:39:43 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:39:43 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:39:43 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:8 03:39:43 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:8 2118.9250 -15753.2000 03/23/16 03:37:04 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:39:43 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:8 03:39:43 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:8 2118.9250 -15753.2000 03/23/16 03:37:04 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:39:44 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:39:44 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.8 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.8 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.8 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:39:44 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:39:44 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:39:44 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:39:44 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:39:44 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:39:44 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:39:44 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:39:44 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:39:44 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:39:44 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:39:44 23 Mar 2016 UTC 05:41:38 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26457 05:41:39 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 05:42:58 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26519 05:42:58 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:42:58 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 05:42:58 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 05:42:58 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322194257 ] 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1333): PID:26526 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 05:42:58 23 Mar 2016 UTC 05:42:58 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 05:42:58 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 05:42:58 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:42:58 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:42:58 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:9 05:42:58 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:9 2118.9260 -15753.1940 03/23/16 05:40:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:42:58 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:9 05:42:58 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:9 2118.9260 -15753.1940 03/23/16 05:40:32 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 05:42:58 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 05:42:58 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.9 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.9 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.9 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:42:58 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:42:58 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:42:58 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:42:58 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:42:58 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:42:58 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:42:58 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:42:58 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:42:58 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:42:58 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 05:42:58 23 Mar 2016 UTC 09:45:06 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31201 09:45:06 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 09:47:16 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31280 09:47:16 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:47:16 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 09:47:16 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 09:47:16 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160322234715 ] 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1333): PID:31287 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 09:47:16 23 Mar 2016 UTC 09:47:16 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 09:47:16 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 09:47:16 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:47:16 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:47:16 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:10 09:47:16 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:10 2118.9280 -15753.1920 03/23/16 09:43:58 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:47:16 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:10 09:47:16 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:10 2118.9280 -15753.1920 03/23/16 09:43:58 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 09:47:16 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 09:47:16 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.10 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.10 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.10 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:47:16 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:47:16 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:47:16 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:47:16 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:47:16 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:47:16 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:47:16 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 09:47:16 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:47:16 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:47:16 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 09:47:16 23 Mar 2016 UTC 13:49:11 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 4580 13:49:11 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 13:50:27 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 4746 13:50:27 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:50:27 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 13:50:27 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 13:50:27 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:50:27 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323035027 ] 13:50:27 23 Mar 2016 UTC: INFO: Base.py(1333): PID:4753 13:50:27 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 13:50:27 23 Mar 2016 UTC 13:50:27 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 13:50:27 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 13:50:27 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 13:50:27 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:50:27 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:50:27 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:11 13:50:27 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:11 2118.9250 -15753.1940 03/23/16 13:47:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:50:28 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:11 13:50:28 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:11 2118.9250 -15753.1940 03/23/16 13:47:55 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 13:50:28 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 13:50:28 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.11 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.11 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.11 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:50:28 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:50:28 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:50:28 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:50:28 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:50:28 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:50:28 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:50:28 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 13:50:28 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:50:28 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:50:28 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 13:50:28 23 Mar 2016 UTC 17:52:42 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10157 17:52:42 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 17:53:58 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10193 17:53:58 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:53:58 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 17:53:58 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 17:53:58 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:53:58 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323075358 ] 17:53:58 23 Mar 2016 UTC: INFO: Base.py(1333): PID:10200 17:53:58 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 17:53:58 23 Mar 2016 UTC 17:53:58 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 17:53:58 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 17:53:58 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 17:53:58 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:53:58 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:53:58 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:12 17:53:58 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:12 2118.9320 -15753.1970 03/23/16 17:51:28 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:53:58 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:12 17:53:58 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:12 2118.9320 -15753.1970 03/23/16 17:51:28 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 17:53:58 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:53:58 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 17:53:59 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.12 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.12 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.12 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:53:59 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:53:59 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:53:59 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:53:59 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:53:59 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:53:59 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:53:59 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 17:53:59 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:53:59 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:53:59 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 17:53:59 23 Mar 2016 UTC 21:56:02 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 15319 21:56:02 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 21:57:17 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 15383 21:57:17 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:57:17 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 21:57:17 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 21:57:17 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323115716 ] 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1333): PID:15390 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 21:57:17 23 Mar 2016 UTC 21:57:17 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 21:57:17 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 21:57:17 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:57:17 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:57:17 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:13 21:57:17 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:13 2111.4040 -15747.5130 03/23/16 21:54:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:57:17 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:13 21:57:17 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:13 2111.4040 -15747.5130 03/23/16 21:54:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 21:57:17 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 21:57:17 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.13 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.13 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.13 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:57:17 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:57:17 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:57:17 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:57:17 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:57:17 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:57:17 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:57:17 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 21:57:17 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:57:17 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:57:17 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 21:57:17 23 Mar 2016 UTC 22:59:33 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 16845 22:59:33 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:00:50 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 16985 23:00:50 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:00:50 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:00:50 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:00:50 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323130049 ] 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1333): PID:16992 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 23:00:50 23 Mar 2016 UTC 23:00:50 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:00:50 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:00:50 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:00:50 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:00:50 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:14 23:00:50 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:14 2111.3690 -15747.5980 03/23/16 22:58:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:00:50 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:14 23:00:50 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:14 2111.3690 -15747.5980 03/23/16 22:58:25 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:00:50 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:00:50 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.14 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.14 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.14 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:00:50 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:00:50 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:00:50 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:00:50 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:00:50 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:00:50 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:00:50 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:00:50 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:00:50 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:00:50 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 23:00:50 23 Mar 2016 UTC 23:32:42 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18131 23:32:42 23 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 23:34:27 23 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18198 23:34:27 23 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:34:27 23 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:34:27 23 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:34:27 23 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:34:27 23 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323133427 ] 23:34:27 23 Mar 2016 UTC: INFO: Base.py(1333): PID:18205 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1375): Started processing 23:34:28 23 Mar 2016 UTC 23:34:28 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:34:28 23 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:34:28 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:34:28 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:34:28 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:15 23:34:28 23 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:15 2111.4490 -15742.4740 03/23/16 23:31:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:34:28 23 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:15 23:34:28 23 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:15 2111.4490 -15742.4740 03/23/16 23:31:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 23:34:28 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:34:28 23 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.15 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.15 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.15 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:34:28 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:34:28 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:34:28 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:34:28 23 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:34:28 23 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:34:28 23 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:34:28 23 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:34:28 23 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:34:28 23 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:34:28 23 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 23:34:28 23 Mar 2016 UTC 00:05:46 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19294 00:05:46 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:07:04 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19355 00:07:04 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:07:04 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:07:04 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:07:04 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323140704 ] 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1333): PID:19362 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 00:07:04 24 Mar 2016 UTC 00:07:04 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:07:04 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:07:04 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:07:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:07:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 00:07:04 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:16 2111.5290 -15741.0340 03/24/16 00:04:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:07:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 00:07:04 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:16 2111.5290 -15741.0340 03/24/16 00:04:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:07:04 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:07:04 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.16 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.16 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.16 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:07:04 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:07:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:07:04 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:07:04 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:07:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:07:04 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:07:04 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:07:04 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:07:04 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:07:04 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 00:07:04 24 Mar 2016 UTC 00:09:06 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19605 00:09:06 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:09:06 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:09:06 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:09:06 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:09:06 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323140906 ] 00:09:06 24 Mar 2016 UTC: INFO: Base.py(1333): PID:19612 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 00:09:07 24 Mar 2016 UTC 00:09:07 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:09:07 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:09:07 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:09:07 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:09:07 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:09:07 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 00:09:07 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:16 2111.5290 -15741.0340 03/24/16 00:04:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:09:07 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:16 00:09:07 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:16 2111.5290 -15741.0340 03/24/16 00:04:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:09:07 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:09:07 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.16 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.16 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.16 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:09:07 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:09:07 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:09:07 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:09:07 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:09:07 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:09:07 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:09:07 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:09:07 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:09:07 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:09:07 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 00:09:07 24 Mar 2016 UTC 00:38:55 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 20365 00:38:56 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:40:22 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 20498 00:40:22 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:40:22 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:40:22 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:40:22 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323144021 ] 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1333): PID:20505 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 00:40:22 24 Mar 2016 UTC 00:40:22 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:40:22 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:40:22 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:40:22 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:40:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:17 2113.3610 -15734.2680 03/24/16 00:37:47 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:40:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:17 2113.3610 -15734.2680 03/24/16 00:37:47 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:40:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:17 2113.3610 -15734.2680 03/24/16 00:37:47 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:40:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:17 2113.3610 -15734.2680 03/24/16 00:37:47 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:40:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:17 2113.3610 -15734.2680 03/24/16 00:37:47 UTC QUIT_COMMAND) to gabe@hawaii.edu 00:40:22 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:40:22 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.17 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:40:22 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:40:22 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:40:22 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:40:22 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:40:22 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:40:22 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:40:22 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 00:40:22 24 Mar 2016 UTC 01:12:13 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 21631 01:12:13 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:13:27 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 21696 01:13:27 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:13:27 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:13:27 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:13:27 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323151326 ] 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1333): PID:21703 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:13:27 24 Mar 2016 UTC 01:13:27 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:13:27 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:13:27 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:13:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:13:27 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:18 2115.7170 -15727.4040 03/24/16 01:11:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:13:27 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2115.7170 -15727.4040 03/24/16 01:11:05 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:13:27 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2115.7170 -15727.4040 03/24/16 01:11:05 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2115.7170 -15727.4040 03/24/16 01:11:05 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2115.7170 -15727.4040 03/24/16 01:11:05 UTC QUIT_COMMAND) to gabe@hawaii.edu 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:18 2115.7170 -15727.4040 03/24/16 01:11:05 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 01:13:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:13:27 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.18 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:13:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:13:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:13:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:13:27 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:13:27 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:13:27 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:13:27 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:13:27 24 Mar 2016 UTC 01:39:22 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22508 01:39:22 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 01:40:39 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22632 01:40:39 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:40:39 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:40:39 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:40:39 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:40:39 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323154039 ] 01:40:39 24 Mar 2016 UTC: INFO: Base.py(1333): PID:22639 01:40:39 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:40:39 24 Mar 2016 UTC 01:40:39 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:40:39 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:40:39 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 01:40:39 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:40:39 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:40:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:40:39 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:19 01:40:39 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:3 call_cycle:19 2117.2500 -15722.7350 03/24/16 01:34:11 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:40:39 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:19 01:40:39 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:19 2117.2500 -15722.7350 03/24/16 01:34:11 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 01:40:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:40:39 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:19 01:40:39 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:19 2117.2500 -15722.7350 03/24/16 01:34:11 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 01:40:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:40:39 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:19 01:40:39 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:19 2117.2500 -15722.7350 03/24/16 01:34:11 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:19 01:40:40 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:19 2117.2500 -15722.7350 03/24/16 01:34:11 UTC QUIT_COMMAND) to gabe@hawaii.edu 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:19 01:40:40 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:19 2117.2500 -15722.7350 03/24/16 01:34:11 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 01:40:40 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:40:40 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.19 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.19 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.19 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:40:40 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:40 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:40:40 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:40:40 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:40:40 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:40:40 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:40:40 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:40:40 24 Mar 2016 UTC 02:02:53 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23504 02:02:53 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 02:04:19 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23566 02:04:19 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:04:19 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:04:19 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:04:19 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323160418 ] 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1333): PID:23573 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 02:04:19 24 Mar 2016 UTC 02:04:19 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:04:19 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:04:19 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:04:19 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:04:19 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:20 2118.9720 -15717.3330 03/24/16 02:01:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:04:19 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2118.9720 -15717.3330 03/24/16 02:01:35 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:04:19 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2118.9720 -15717.3330 03/24/16 02:01:35 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2118.9720 -15717.3330 03/24/16 02:01:35 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2118.9720 -15717.3330 03/24/16 02:01:35 UTC QUIT_COMMAND) to gabe@hawaii.edu 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:20 2118.9720 -15717.3330 03/24/16 02:01:35 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 02:04:19 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:04:19 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.20 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:04:19 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:04:19 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:04:19 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:04:19 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:04:19 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:04:19 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:04:19 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 02:04:19 24 Mar 2016 UTC 02:26:02 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 24254 02:26:02 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 02:27:31 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 24322 02:27:31 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:27:31 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:27:31 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:27:31 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323162730 ] 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1333): PID:24329 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 02:27:31 24 Mar 2016 UTC 02:27:31 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:27:31 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:27:31 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:27:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:27:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:21 2120.4510 -15712.7120 03/24/16 02:24:48 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:27:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:21 2120.4510 -15712.7120 03/24/16 02:24:48 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:27:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:21 2120.4510 -15712.7120 03/24/16 02:24:48 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:21 2120.4510 -15712.7120 03/24/16 02:24:48 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:21 2120.4510 -15712.7120 03/24/16 02:24:48 UTC QUIT_COMMAND) to gabe@hawaii.edu 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:21 2120.4510 -15712.7120 03/24/16 02:24:48 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 02:27:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:27:31 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.21 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:27:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:27:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:27:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:27:31 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:27:31 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:27:31 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:27:31 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 02:27:31 24 Mar 2016 UTC 02:44:10 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 24757 02:44:10 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 02:45:56 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 24834 02:45:56 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:45:56 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:45:56 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:45:56 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:45:56 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323164556 ] 02:45:56 24 Mar 2016 UTC: INFO: Base.py(1333): PID:24841 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 02:45:57 24 Mar 2016 UTC 02:45:57 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:45:57 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:45:57 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:45:57 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:45:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:22 2121.6530 -15709.1940 03/24/16 02:43:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:45:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2121.6530 -15709.1940 03/24/16 02:43:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:45:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2121.6530 -15709.1940 03/24/16 02:43:00 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2121.6530 -15709.1940 03/24/16 02:43:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2121.6530 -15709.1940 03/24/16 02:43:00 UTC QUIT_COMMAND) to gabe@hawaii.edu 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:22 2121.6530 -15709.1940 03/24/16 02:43:00 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 02:45:57 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:45:57 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.22 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:45:57 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:57 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:45:57 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:57 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:45:57 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:45:57 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:45:57 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 02:45:57 24 Mar 2016 UTC 02:52:09 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 25158 02:52:09 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 02:53:30 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 25225 02:53:30 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:53:30 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:53:30 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:53:30 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:53:30 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323165330 ] 02:53:30 24 Mar 2016 UTC: INFO: Base.py(1333): PID:25232 02:53:30 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 02:53:30 24 Mar 2016 UTC 02:53:30 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:53:30 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:53:30 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:53:30 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:53:30 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:53:30 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:53:30 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 02:53:30 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:23 2122.1900 -15707.6160 03/24/16 02:51:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:53:30 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 02:53:30 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2122.1900 -15707.6160 03/24/16 02:51:00 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 02:53:30 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:53:30 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 02:53:30 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2122.1900 -15707.6160 03/24/16 02:51:00 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 02:53:30 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:53:30 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 02:53:30 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2122.1900 -15707.6160 03/24/16 02:51:00 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 02:53:30 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:53:30 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 02:53:30 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2122.1900 -15707.6160 03/24/16 02:51:00 UTC QUIT_COMMAND) to gabe@hawaii.edu 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:23 02:53:31 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:23 2122.1900 -15707.6160 03/24/16 02:51:00 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 02:53:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:53:31 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.23 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.23 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.23 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:53:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:53:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:31 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:53:31 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:53:31 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:53:31 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 02:53:31 24 Mar 2016 UTC 03:01:10 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 25841 03:01:10 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:02:32 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 25909 03:02:32 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:02:32 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:02:32 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:02:32 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:02:32 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323170232 ] 03:02:32 24 Mar 2016 UTC: INFO: Base.py(1333): PID:25916 03:02:32 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:02:32 24 Mar 2016 UTC 03:02:32 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:02:32 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:02:32 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:02:32 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:02:32 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:02:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:02:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 03:02:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:24 2122.7420 -15706.1550 03/24/16 02:59:49 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:02:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 03:02:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2122.7420 -15706.1550 03/24/16 02:59:49 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:02:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:02:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 03:02:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2122.7420 -15706.1550 03/24/16 02:59:49 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 03:02:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2122.7420 -15706.1550 03/24/16 02:59:49 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 03:02:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2122.7420 -15706.1550 03/24/16 02:59:49 UTC QUIT_COMMAND) to gabe@hawaii.edu 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:24 03:02:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:24 2122.7420 -15706.1550 03/24/16 02:59:49 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 03:02:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:02:33 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.24 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.24 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.24 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:02:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:02:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:02:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:02:33 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:02:33 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:02:33 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:02:33 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:02:33 24 Mar 2016 UTC 03:10:04 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26237 03:10:04 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:11:37 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26311 03:11:37 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:11:37 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:11:37 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:11:37 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:11:37 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323171137 ] 03:11:37 24 Mar 2016 UTC: INFO: Base.py(1333): PID:26318 03:11:37 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:11:37 24 Mar 2016 UTC 03:11:37 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:11:37 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:11:37 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:11:37 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:11:37 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:11:37 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:11:37 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 03:11:37 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:25 2122.8050 -15705.9970 03/24/16 03:08:38 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:11:38 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2122.8050 -15705.9970 03/24/16 03:08:38 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:11:38 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2122.8050 -15705.9970 03/24/16 03:08:38 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2122.8050 -15705.9970 03/24/16 03:08:38 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2122.8050 -15705.9970 03/24/16 03:08:38 UTC QUIT_COMMAND) to gabe@hawaii.edu 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:25 2122.8050 -15705.9970 03/24/16 03:08:38 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 03:11:38 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:11:38 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.25 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:11:38 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:11:38 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:11:38 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:11:38 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:11:38 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:11:38 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:11:38 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:11:38 24 Mar 2016 UTC 03:22:35 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26630 03:22:35 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:24:10 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26703 03:24:10 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:24:10 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:24:10 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:24:10 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:24:10 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323172410 ] 03:24:10 24 Mar 2016 UTC: INFO: Base.py(1333): PID:26710 03:24:10 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:24:10 24 Mar 2016 UTC 03:24:10 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:24:10 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:24:11 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:24:11 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:24:11 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:3 call_cycle:26 2122.8120 -15706.0020 03/24/16 03:17:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:24:11 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:26 2122.8120 -15706.0020 03/24/16 03:17:06 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:24:11 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:26 2122.8120 -15706.0020 03/24/16 03:17:06 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:26 2122.8120 -15706.0020 03/24/16 03:17:06 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:26 2122.8120 -15706.0020 03/24/16 03:17:06 UTC QUIT_COMMAND) to gabe@hawaii.edu 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:3 call_cycle:26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:3 call_cycle:26 2122.8120 -15706.0020 03/24/16 03:17:06 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 03:24:11 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:24:11 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.26 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:24:11 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:24:11 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:24:11 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:24:11 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:24:11 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:24:11 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:24:11 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:24:11 24 Mar 2016 UTC 03:27:46 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26895 03:27:46 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:29:09 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 27043 03:29:09 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:29:09 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:29:09 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:29:09 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:29:09 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323172909 ] 03:29:09 24 Mar 2016 UTC: INFO: Base.py(1333): PID:27050 03:29:09 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:29:09 24 Mar 2016 UTC 03:29:09 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:29:09 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:29:09 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:29:09 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:29:09 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:29:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:29:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 03:29:09 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:0 calls_made:1 call_cycle:27 2122.8200 -15705.9880 03/24/16 03:26:36 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:29:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2122.8200 -15705.9880 03/24/16 03:26:36 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:29:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2122.8200 -15705.9880 03/24/16 03:26:36 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2122.8200 -15705.9880 03/24/16 03:26:36 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2122.8200 -15705.9880 03/24/16 03:26:36 UTC QUIT_COMMAND) to gabe@hawaii.edu 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:0 calls_made:1 call_cycle:27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:0 calls_made:1 call_cycle:27 2122.8200 -15705.9880 03/24/16 03:26:36 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 03:29:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:29:10 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.0.27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.0.27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.0.27 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:29:10 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:29:10 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:29:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:29:10 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:29:10 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:29:10 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:29:10 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:29:10 24 Mar 2016 UTC 03:52:09 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 27779 03:52:09 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:54:09 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 27851 03:54:09 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:54:09 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:54:09 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:54:09 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323175408 ] 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1333): PID:27858 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:54:09 24 Mar 2016 UTC 03:54:09 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:54:09 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:54:09 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:54:09 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:54:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 03:54:09 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:0 2122.9050 -15705.9100 03/24/16 03:50:36 UTC) to sdrifter@soest.hawaii.edu 03:54:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:54:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:54:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:54:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:54:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:0 03:54:09 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001lz 03:54:09 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0001lz.1a.x00 03:54:09 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001lz.r in process_file_group 03:54:09 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460001.log 03:54:09 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:54:09 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 03:54:09 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 03:54:09 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 03:54:09 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 03:54:09 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 03:54:09 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [1] 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:54:09 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout seen - transmissions from glider complete Consult baselog_160323175408 for details. 03:54:09 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:54:09 24 Mar 2016 UTC /home/sg146/p1460001.log /home/sg146/p1460001.asc 03:54:09 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:54:09 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:54:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:54:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:54:10 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:54:10 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:54:10 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:54:10 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:54:10 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:54:10 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:54:10 24 Mar 2016 UTC 03:56:03 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 28021 03:56:03 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 03:57:21 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 28091 03:57:21 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:57:21 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:57:21 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:57:21 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323175720 ] 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1333): PID:28098 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:57:21 24 Mar 2016 UTC 03:57:21 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:57:21 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:57:21 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:57:21 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:57:21 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:1 2122.9270 -15705.8920 03/24/16 03:54:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:57:21 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2122.9270 -15705.8920 03/24/16 03:54:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:57:21 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2122.9270 -15705.8920 03/24/16 03:54:54 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:57:21 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2122.9270 -15705.8920 03/24/16 03:54:54 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:57:21 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2122.9270 -15705.8920 03/24/16 03:54:54 UTC QUIT_COMMAND) to gabe@hawaii.edu 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:57:21 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:1 2122.9270 -15705.8920 03/24/16 03:54:54 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 03:57:21 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:57:21 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 03:57:21 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 03:57:21 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 03:57:21 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 03:57:21 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 03:57:21 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1.1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1.1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:57:21 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout seen - transmissions from glider complete Consult baselog_160323175720 for details. 03:57:21 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:57:21 24 Mar 2016 UTC /home/sg146/p1460001.asc 03:57:21 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:57:21 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:57:21 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:57:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:57:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:57:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:57:22 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:57:22 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:57:22 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:57:22 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:57:22 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:57:22 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:57:22 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:57:22 24 Mar 2016 UTC 04:01:51 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 28602 04:01:51 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {STP} 04:03:48 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 28807 04:03:48 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:03:48 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:03:48 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:03:48 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:03:48 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323180347 ] 04:03:48 24 Mar 2016 UTC: INFO: Base.py(1333): PID:28814 04:03:48 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:03:48 24 Mar 2016 UTC 04:03:48 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:03:48 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:03:48 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:03:48 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:03:48 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:03:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:03:48 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 04:03:48 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:2 2122.9550 -15705.8660 03/24/16 04:00:47 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:03:48 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 04:03:48 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2122.9550 -15705.8660 03/24/16 04:00:47 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:03:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:03:48 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 04:03:48 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2122.9550 -15705.8660 03/24/16 04:00:47 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 04:03:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:03:48 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 04:03:48 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2122.9550 -15705.8660 03/24/16 04:00:47 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:03:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:03:48 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 04:03:48 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2122.9550 -15705.8660 03/24/16 04:00:47 UTC QUIT_COMMAND) to gabe@hawaii.edu 04:03:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:03:48 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:2 04:03:48 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:2 2122.9550 -15705.8660 03/24/16 04:00:47 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 04:03:48 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:03:48 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:03:49 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 04:03:49 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 04:03:49 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 04:03:49 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 04:03:49 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 04:03:49 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.2 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.1.2 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1.2 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1.2 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:03:49 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout not seen - retransmissions from glider possible Consult baselog_160323180347 for details. 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:03:49 24 Mar 2016 UTC /home/sg146/p1460001.asc 04:03:49 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:03:49 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:03:49 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:03:49 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:03:49 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:03:49 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:03:49 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:03:49 24 Mar 2016 UTC 04:05:55 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 28981 04:05:55 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {STP} 04:05:59 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29037 04:05:59 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:05:59 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:05:59 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:05:59 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323180558 ] 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1333): PID:29044 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:05:59 24 Mar 2016 UTC 04:05:59 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:05:59 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:05:59 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:05:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:05:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:05:59 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 04:05:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:05:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:05:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000lz 04:05:59 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000lz.x00 04:05:59 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000lz.b.1a.x00 04:05:59 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000lz.r in process_file_group 04:05:59 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460000.log 04:05:59 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:05:59 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000kl 04:05:59 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000kl.x 04:05:59 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000kl.b.1a.x 04:05:59 24 Mar 2016 UTC: WARNING: Base.py(727): Final fragment /home/sg146/sg0000kl.b.1a.x size (12616) is too big, expected less than or equal to 4096. 04:05:59 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 04:05:59 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001lz 04:05:59 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0001lz.1a.x00 04:05:59 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001lz.r in process_file_group 04:05:59 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460001.log 04:05:59 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:05:59 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 04:05:59 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 04:05:59 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 04:05:59 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 04:05:59 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [0, 1] 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.2 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.1.2 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1.2 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1.2 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:05:59 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout not seen - retransmissions from glider possible Consult baselog_160323180558 for details. 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:05:59 24 Mar 2016 UTC /home/sg146/p1460000.log /home/sg146/p1460001.log /home/sg146/p1460001.asc 04:05:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:05:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:05:59 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:05:59 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:05:59 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:05:59 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:05:59 24 Mar 2016 UTC 04:08:18 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29211 04:08:18 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {STP} 04:10:14 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29341 04:10:14 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:10:14 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:10:14 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:10:14 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:10:14 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323181013 ] 04:10:14 24 Mar 2016 UTC: INFO: Base.py(1333): PID:29348 04:10:14 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:10:14 24 Mar 2016 UTC 04:10:14 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:10:14 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:10:14 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:10:14 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:10:14 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:10:14 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:10:14 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:3 04:10:14 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:3 2122.9800 -15705.8360 03/24/16 04:06:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:10:14 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:3 04:10:14 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:3 2122.9800 -15705.8360 03/24/16 04:06:54 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:10:14 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:10:14 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:3 04:10:14 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:3 2122.9800 -15705.8360 03/24/16 04:06:54 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 04:10:14 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:10:14 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:3 04:10:14 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:3 2122.9800 -15705.8360 03/24/16 04:06:54 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:10:14 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:10:14 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:3 04:10:14 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:3 2122.9800 -15705.8360 03/24/16 04:06:54 UTC QUIT_COMMAND) to gabe@hawaii.edu 04:10:14 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:10:14 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:3 04:10:14 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:3 2122.9800 -15705.8360 03/24/16 04:06:54 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 04:10:14 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:10:14 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:10:14 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:10:15 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 04:10:15 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 04:10:15 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 04:10:15 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 04:10:15 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 04:10:15 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.3 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.1.3 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.1.3 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.1.3 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:10:15 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout not seen - retransmissions from glider possible Consult baselog_160323181013 for details. 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:10:15 24 Mar 2016 UTC /home/sg146/p1460001.asc 04:10:15 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:10:15 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:10:15 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:10:15 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:10:15 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:10:15 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:10:15 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:10:15 24 Mar 2016 UTC 04:14:20 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29553 04:14:20 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:15:02 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29612 04:15:02 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:15:02 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:15:02 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:15:02 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323181501 ] 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1333): PID:29619 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:15:02 24 Mar 2016 UTC 04:15:02 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:15:02 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:15:02 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:15:02 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:15:02 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:1 calls_made:1 call_cycle:4 2123.0040 -15705.8110 03/24/16 04:13:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:15:02 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:4 2123.0040 -15705.8110 03/24/16 04:13:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:15:02 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:4 2123.0040 -15705.8110 03/24/16 04:13:17 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:4 2123.0040 -15705.8110 03/24/16 04:13:17 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:4 2123.0040 -15705.8110 03/24/16 04:13:17 UTC QUIT_COMMAND) to gabe@hawaii.edu 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:1 calls_made:1 call_cycle:4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:1 calls_made:1 call_cycle:4 2123.0040 -15705.8110 03/24/16 04:13:17 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 04:15:02 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:15:02 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 04:15:02 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 04:15:02 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 04:15:02 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 04:15:02 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 04:15:02 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.4 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:15:02 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout seen - transmissions from glider complete Consult baselog_160323181501 for details. 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:15:02 24 Mar 2016 UTC /home/sg146/p1460001.asc 04:15:02 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:15:02 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:15:02 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:15:02 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:15:02 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:15:02 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:15:03 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:15:03 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:15:03 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:15:03 24 Mar 2016 UTC 04:26:13 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29998 04:26:13 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:26:15 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30048 04:26:15 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:26:15 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:26:15 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:26:15 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323182615 ] 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1333): PID:30055 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:26:15 24 Mar 2016 UTC 04:26:15 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:26:15 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:26:15 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:26:15 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:26:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:26:15 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:26:15 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 04:26:15 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:26:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:26:15 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:26:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:26:15 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:26:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:26:15 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:26:15 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:26:15 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:26:15 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:26:15 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:26:15 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000lz 04:26:15 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000lz.x00 04:26:15 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000lz.b.1a.x00 04:26:15 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000lz.r in process_file_group 04:26:15 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460000.log 04:26:15 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:26:15 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000kl 04:26:15 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000kl.x 04:26:15 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000kl.b.1a.x 04:26:15 24 Mar 2016 UTC: WARNING: Base.py(727): Final fragment /home/sg146/sg0000kl.b.1a.x size (12616) is too big, expected less than or equal to 4096. 04:26:15 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 04:26:15 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001lz 04:26:15 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0001lz.1a.x00 04:26:15 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001lz.r in process_file_group 04:26:15 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460001.log 04:26:16 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:26:16 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 04:26:16 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 04:26:16 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 04:26:16 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): 04:26:16 24 Mar 2016 UTC: ERROR: Could not process sg0001dz - skipping: Traceback (most recent call last): File "/usr/local/basestation/Base.py", line 266, in process_dive_selftest pfg_retval = process_file_group(file_group, fragment_size, 0) File "/usr/local/basestation/Base.py", line 612, in process_file_group if(sg_data_file.asc_to_eng(sg_log_file)): File "/usr/local/basestation/DataFiles.py", line 185, in asc_to_eng Sensors.process_sensor_extensions('asc2eng', self) File "/usr/local/basestation/Sensors.py", line 259, in process_sensor_extensions return sensor_extensions.process_sensor_extensions(processing_func, *args) File "/usr/local/basestation/Sensors.py", line 201, in process_sensor_extensions extension_ret_val = ext[processing_func](self.__base_opts, key, *args) File "/usr/local/basestation/Sensors/aa3830_ext.py", line 125, in asc2eng aa3830_dphase = aa3830_dphase / 100.0 TypeError: unsupported operand type(s) for /: 'NoneType' and 'float' 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0] 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [0, 1] 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.4 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:26:16 24 Mar 2016 UTC: ERROR: Base.py(1960): Dive [1] failed to process completely. Glider logout not seen - retransmissions from glider possible Consult baselog_160323182615 for details. 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:26:16 24 Mar 2016 UTC /home/sg146/p1460000.log /home/sg146/p1460001.log /home/sg146/p1460001.asc 04:26:16 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:16 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:26:16 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:26:16 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:26:16 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:26:16 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:26:16 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:26:16 24 Mar 2016 UTC 04:37:26 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30632 04:37:26 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:37:29 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30683 04:37:29 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:37:29 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:37:29 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:37:29 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323183728 ] 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1333): PID:30690 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:37:29 24 Mar 2016 UTC 04:37:29 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:37:29 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:37:29 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:37:29 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:37:29 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:37:29 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:37:29 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 04:37:29 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:37:29 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:37:29 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:37:29 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:37:29 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:37:29 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:37:29 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:37:29 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:37:29 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 04:37:29 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:37:29 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000lz 04:37:29 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000lz.x00 04:37:29 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000lz.b.1a.x00 04:37:29 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000lz.r in process_file_group 04:37:29 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460000.log 04:37:29 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:37:29 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0000kl 04:37:29 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0000kl.x 04:37:29 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0000kl.b.1a.x 04:37:29 24 Mar 2016 UTC: WARNING: Base.py(727): Final fragment /home/sg146/sg0000kl.b.1a.x size (12616) is too big, expected less than or equal to 4096. 04:37:29 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0000kl.r in process_file_group 04:37:29 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001lz 04:37:29 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0001lz.1a.x00 04:37:29 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001lz.r in process_file_group 04:37:29 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460001.log 04:37:29 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:37:29 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0001dz 04:37:29 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0001dz.x00 04:37:29 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0001dz.b.1a.x00 04:37:29 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0001dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [0, 1] 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [0, 1] 04:37:29 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460001) for profiles 04:37:29 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:37:29 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2937): Changed (22/119) 1:22 to QC_BAD because CT out of water 04:37:29 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(2946): CTD out of the water before dive (0.750m) 04:37:29 24 Mar 2016 UTC: INFO: QC.py(365): Changed (21/119) 3:5 7 8 10 12:15 21 54 55 60 62:67 69 to QC_PROBABLY_BAD because raw temperature spikes 04:37:29 24 Mar 2016 UTC: INFO: QC.py(180): Changed (21/119) 3:5 7 8 10 12:15 21 54 55 60 62:67 69 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:37:29 24 Mar 2016 UTC: INFO: QC.py(180): Changed (22/119) 1:22 to QC_BAD because changed raw cond implies changed raw salinity 04:37:29 24 Mar 2016 UTC: INFO: QC.py(365): Changed (21/119) 3:5 7 8 10 12:15 21 54 55 60 62:67 69 to QC_INTERPOLATED because temperature spikes 04:37:29 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (36/119) 40:75 to QC_BAD because slow apogee CT flow 04:37:29 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (58/119) 1:22 40:75 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:37:29 24 Mar 2016 UTC: INFO: QC.py(180): Changed (58/119) 1:22 40:75 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:37:30 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 76 04:37:30 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:37:30 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 21.20 cm/s 04:37:30 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.49 cm/s 04:37:30 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:37:30 24 Mar 2016 UTC: INFO: QC.py(180): Changed (21/119) 3:5 7 8 10 12:15 21 54 55 60 62:67 69 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:37:30 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (3/119) 76:78 to QC_BAD because slow flow in SBE43 04:37:30 24 Mar 2016 UTC: INFO: QC.py(180): Changed (21/119) 3:5 7 8 10 12:15 21 54 55 60 62:67 69 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:37:30 24 Mar 2016 UTC: INFO: QC.py(180): Changed (58/119) 1:22 40:75 to QC_BAD because changed salinity implies changed optode oxygen 04:37:30 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:37:30 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:37:30 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:37:31 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 1: Data set size for profile, binned and kkyy files reduced by 58 points, a 48.74% reduction 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.1.4 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:37:31 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:37:31 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:37:31 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 14, max_depth_dive_num = 1 04:37:31 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:37:31 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:37:31 24 Mar 2016 UTC /home/sg146/p1460000.log /home/sg146/p1460001.log /home/sg146/p1460001.eng /home/sg146/p1460001.asc /home/sg146/p1460001.pro /home/sg146/p1460001.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:37:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:31 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:37:31 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:31 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:37:31 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:37:31 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:37:31 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:37:31 24 Mar 2016 UTC 04:46:24 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30996 04:46:24 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:51:26 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31219 04:51:26 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:51:26 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:51:26 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:51:26 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323185125 ] 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1333): PID:31226 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:51:26 24 Mar 2016 UTC 04:51:26 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:51:26 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:51:26 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:51:26 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:51:26 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:51:26 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 04:51:26 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:0 2123.1560 -15705.6600 03/24/16 04:44:59 UTC) to sdrifter@soest.hawaii.edu 04:51:26 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 04:51:26 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:51:26 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 04:51:26 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:51:26 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 04:51:26 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:51:26 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 04:51:26 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:51:26 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:0 04:51:26 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:51:26 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0002lz 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0002lz.1a.x00 04:51:26 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0002lz.r in process_file_group 04:51:26 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460002.log 04:51:26 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:51:26 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0002dz 04:51:26 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0002dz.x01 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0002dz.1a.x00 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0002dz.b.1a.x01 04:51:26 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0002dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:51:26 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:51:26 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0002kz 04:51:26 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0002kz.x03 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0002kz.1a.x00 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0002kz.1a.x01 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0002kz.1a.x02 04:51:26 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0002kz.b.1a.x03 04:51:26 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0002kz.r in process_file_group 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [2] 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [2] 04:51:26 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460002) for profiles 04:51:26 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:51:26 24 Mar 2016 UTC: INFO: QC.py(365): Changed (32/176) 2:5 70 71 74:76 79:84 86:92 95:99 104:108 to QC_PROBABLY_BAD because raw temperature spikes 04:51:26 24 Mar 2016 UTC: INFO: QC.py(180): Changed (32/176) 2:5 70 71 74:76 79:84 86:92 95:99 104:108 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:51:26 24 Mar 2016 UTC: INFO: QC.py(365): Changed (32/176) 2:5 70 71 74:76 79:84 86:92 95:99 104:108 to QC_INTERPOLATED because temperature spikes 04:51:26 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (57/176) 56:112 to QC_BAD because slow apogee CT flow 04:51:26 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/176) 1:11 to QC_BAD because prior to dive start 04:51:26 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (68/176) 1:11 56:112 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:51:26 24 Mar 2016 UTC: INFO: QC.py(180): Changed (68/176) 1:11 56:112 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:51:26 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 2 stalled points 113 114 04:51:27 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 24.36 cm/s 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 6.87 cm/s 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:51:27 24 Mar 2016 UTC: INFO: QC.py(180): Changed (32/176) 2:5 70 71 74:76 79:84 86:92 95:99 104:108 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:51:27 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (4/176) 113:115 176 to QC_BAD because slow flow in SBE43 04:51:27 24 Mar 2016 UTC: INFO: QC.py(180): Changed (32/176) 2:5 70 71 74:76 79:84 86:92 95:99 104:108 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:51:27 24 Mar 2016 UTC: INFO: QC.py(180): Changed (68/176) 1:11 56:112 to QC_BAD because changed salinity implies changed optode oxygen 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:51:27 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:51:27 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 2: Data set size for profile, binned and kkyy files reduced by 68 points, a 38.64% reduction 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.2 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 20, max_depth_dive_num = 2 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:51:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:51:27 24 Mar 2016 UTC /home/sg146/p1460002.log /home/sg146/p1460002.eng /home/sg146/p1460002.asc /home/sg146/p1460002.cap /home/sg146/p1460002.pro /home/sg146/p1460002.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:51:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:51:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:51:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:51:27 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:51:27 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:51:27 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:51:27 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:51:27 24 Mar 2016 UTC 04:53:28 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31405 04:53:28 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:54:09 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31467 04:54:09 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:54:09 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:54:09 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:54:09 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:54:09 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323185409 ] 04:54:09 24 Mar 2016 UTC: INFO: Base.py(1333): PID:31474 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:54:10 24 Mar 2016 UTC 04:54:10 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:54:10 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:54:10 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:54:10 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:54:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:1 2123.1870 -15705.6300 03/24/16 04:52:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:54:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2123.1870 -15705.6300 03/24/16 04:52:17 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:54:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2123.1870 -15705.6300 03/24/16 04:52:17 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2123.1870 -15705.6300 03/24/16 04:52:17 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2123.1870 -15705.6300 03/24/16 04:52:17 UTC QUIT_COMMAND) to gabe@hawaii.edu 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:1 2123.1870 -15705.6300 03/24/16 04:52:17 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 04:54:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:54:10 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.2.1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:54:10 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:54:10 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:54:10 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:54:10 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:54:10 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:54:10 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:54:10 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:54:10 24 Mar 2016 UTC 04:58:47 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31680 04:58:47 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:59:33 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31732 04:59:33 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:59:33 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:59:33 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:59:33 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323185932 ] 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1333): PID:31739 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:59:33 24 Mar 2016 UTC 04:59:33 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:59:33 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:59:33 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:59:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:59:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:2 calls_made:1 call_cycle:2 2123.2110 -15705.6100 03/24/16 04:57:36 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:59:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2123.2110 -15705.6100 03/24/16 04:57:36 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:59:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2123.2110 -15705.6100 03/24/16 04:57:36 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2123.2110 -15705.6100 03/24/16 04:57:36 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2123.2110 -15705.6100 03/24/16 04:57:36 UTC QUIT_COMMAND) to gabe@hawaii.edu 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:2 calls_made:1 call_cycle:2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:2 calls_made:1 call_cycle:2 2123.2110 -15705.6100 03/24/16 04:57:36 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 04:59:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:59:33 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.2.2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:59:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:59:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:59:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:59:33 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:59:33 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:59:33 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:59:33 24 Mar 2016 UTC 06:34:06 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2219 06:34:06 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:36:57 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2309 06:36:57 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:36:57 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:36:57 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:36:57 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323203656 ] 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1333): PID:2316 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 06:36:57 24 Mar 2016 UTC 06:36:57 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:36:57 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:36:57 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:36:57 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:36:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:36:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 06:36:57 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:0 2124.2990 -15705.3850 03/24/16 06:32:34 UTC) to sdrifter@soest.hawaii.edu 06:36:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 06:36:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:36:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 06:36:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:36:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 06:36:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:36:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 06:36:57 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:36:57 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:0 06:36:57 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:36:57 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0003lz 06:36:57 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0003lz.1a.x00 06:36:57 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0003lz.r in process_file_group 06:36:57 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460003.log 06:36:57 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 06:36:57 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0003dz 06:36:57 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0003dz.x02 06:36:57 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0003dz.1a.x00 06:36:57 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0003dz.1a.x01 06:36:57 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0003dz.b.1a.x02 06:36:57 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0003dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [3] 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [3] 06:36:57 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460003) for profiles 06:36:57 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 06:36:57 24 Mar 2016 UTC: INFO: QC.py(365): Changed (3/399) 172 175 176 to QC_PROBABLY_BAD because raw temperature spikes 06:36:57 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/399) 181 to QC_PROBABLY_BAD because raw conductivity spikes 06:36:57 24 Mar 2016 UTC: INFO: QC.py(180): Changed (3/399) 172 175 176 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:36:57 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/399) 181 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:36:57 24 Mar 2016 UTC: INFO: QC.py(365): Changed (3/399) 172 175 176 to QC_INTERPOLATED because temperature spikes 06:36:57 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/399) 181 to QC_INTERPOLATED because conductivity spikes 06:36:57 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (15/399) 168:182 to QC_BAD because slow apogee CT flow 06:36:57 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/399) 1:10 to QC_BAD because prior to dive start 06:36:57 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (25/399) 1:10 168:182 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:36:57 24 Mar 2016 UTC: INFO: QC.py(180): Changed (25/399) 1:10 168:182 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 06:36:58 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:36:58 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 3 interp_salinity data_points in_between 184 224 % suspect thermal-inertia points 217 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.02 cm/s 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.57 cm/s 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:36:58 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (43/399) 149 150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:36:58 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/399) 176 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:36:58 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/399) 399 to QC_BAD because slow flow in SBE43 06:36:58 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (54/399) 121:131 149 150 152:155 157:160 162:165 167:170 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 06:36:58 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/399) 176 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:36:58 24 Mar 2016 UTC: INFO: QC.py(180): Changed (25/399) 1:10 168:182 to QC_BAD because changed salinity implies changed optode oxygen 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:36:58 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 3: Data set size for profile, binned and kkyy files reduced by 25 points, a 6.27% reduction 06:36:58 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.3 06:36:58 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:36:58 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:36:58 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 06:36:58 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 06:36:59 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 06:36:59 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 06:36:59 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:36:59 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:36:59 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:36:59 24 Mar 2016 UTC /home/sg146/p1460003.log /home/sg146/p1460003.eng /home/sg146/p1460003.asc /home/sg146/p1460003.pro /home/sg146/p1460003.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 06:36:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:36:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:36:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:36:59 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:36:59 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:36:59 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:36:59 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:36:59 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:36:59 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 06:36:59 24 Mar 2016 UTC 06:38:50 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2477 06:38:50 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:39:32 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2600 06:39:32 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:39:32 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:39:32 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:39:32 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323203931 ] 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1333): PID:2607 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 06:39:32 24 Mar 2016 UTC 06:39:32 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:39:32 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:39:32 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:39:32 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:39:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:1 2124.3160 -15705.3850 03/24/16 06:37:42 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:39:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2124.3160 -15705.3850 03/24/16 06:37:42 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:39:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2124.3160 -15705.3850 03/24/16 06:37:42 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2124.3160 -15705.3850 03/24/16 06:37:42 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2124.3160 -15705.3850 03/24/16 06:37:42 UTC QUIT_COMMAND) to gabe@hawaii.edu 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:1 2124.3160 -15705.3850 03/24/16 06:37:42 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 06:39:32 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:39:32 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.3.1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:39:32 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:39:32 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:39:32 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:39:32 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:39:32 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:39:32 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:39:32 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 06:39:32 24 Mar 2016 UTC 06:44:13 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2884 06:44:13 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:44:54 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 3028 06:44:54 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:44:54 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:44:54 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:44:54 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:44:54 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323204454 ] 06:44:54 24 Mar 2016 UTC: INFO: Base.py(1333): PID:3035 06:44:54 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 06:44:54 24 Mar 2016 UTC 06:44:54 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:44:54 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:44:54 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:44:54 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:44:54 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:44:54 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:44:54 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 06:44:54 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:3 calls_made:1 call_cycle:2 2124.3310 -15705.3900 03/24/16 06:42:59 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:44:54 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 06:44:54 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2124.3310 -15705.3900 03/24/16 06:42:59 UTC QUIT_COMMAND) to sdrifter@soest.hawaii.edu 06:44:54 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:44:54 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 06:44:54 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2124.3310 -15705.3900 03/24/16 06:42:59 UTC QUIT_COMMAND) to seaglider@km.soest.hawaii.edu 06:44:54 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:44:54 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 06:44:54 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2124.3310 -15705.3900 03/24/16 06:42:59 UTC QUIT_COMMAND) to poulos@soest.hawaii.edu 06:44:54 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:44:54 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 06:44:54 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2124.3310 -15705.3900 03/24/16 06:42:59 UTC QUIT_COMMAND) to gabe@hawaii.edu 06:44:54 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:44:54 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:3 calls_made:1 call_cycle:2 06:44:54 24 Mar 2016 UTC: INFO: Base.py(975): Sending IN RECOVERY (dive:3 calls_made:1 call_cycle:2 2124.3310 -15705.3900 03/24/16 06:42:59 UTC QUIT_COMMAND) to jburkitt@hawaii.edu 06:44:55 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:44:55 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.3.2 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:44:55 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:44:55 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:44:55 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:44:55 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:44:55 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:44:55 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:44:55 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 06:44:55 24 Mar 2016 UTC 08:20:11 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 6473 08:20:11 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:22:17 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 6585 08:22:17 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:22:17 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 08:22:17 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 08:22:17 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:22:17 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323222217 ] 08:22:17 24 Mar 2016 UTC: INFO: Base.py(1333): PID:6592 08:22:17 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 08:22:17 24 Mar 2016 UTC 08:22:17 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 08:22:17 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 08:22:17 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 08:22:17 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 08:22:17 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:22:17 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:22:17 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 08:22:17 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:4 calls_made:1 call_cycle:0 2125.3200 -15704.6510 03/24/16 08:18:36 UTC) to sdrifter@soest.hawaii.edu 08:22:17 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 08:22:17 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:22:17 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 08:22:17 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:22:17 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 08:22:17 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:22:17 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 08:22:17 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:22:17 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:4 calls_made:1 call_cycle:0 08:22:17 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:22:17 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 08:22:18 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0004lz 08:22:18 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0004lz.x00 08:22:18 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0004lz.b.1a.x00 08:22:18 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0004lz.r in process_file_group 08:22:18 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460004.log 08:22:18 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 08:22:18 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0004dz 08:22:18 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0004dz.x02 08:22:18 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0004dz.1a.x00 08:22:18 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0004dz.1a.x01 08:22:18 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0004dz.b.1a.x02 08:22:18 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0004dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [4] 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [4] 08:22:18 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460004) for profiles 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 08:22:18 24 Mar 2016 UTC: INFO: QC.py(365): Changed (6/408) 2 3 174 176 177 179 to QC_PROBABLY_BAD because raw temperature spikes 08:22:18 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/408) 408 to QC_BAD because raw salinity below bound 08:22:18 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/408) 408 to QC_BAD because bad raw salinity indicates raw conductivity issues 08:22:18 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/408) 399 to QC_PROBABLY_BAD because raw conductivity spikes 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (6/408) 2 3 174 176 177 179 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/408) 399 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:22:18 24 Mar 2016 UTC: INFO: QC.py(365): Changed (6/408) 2 3 174 176 177 179 to QC_INTERPOLATED because temperature spikes 08:22:18 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/408) 408 to QC_BAD because salinity below bound 08:22:18 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/408) 408 to QC_BAD because bad salinity indicates conductivity issues 08:22:18 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/408) 399 to QC_INTERPOLATED because conductivity spikes 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (14/408) 172:185 to QC_BAD because slow apogee CT flow 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (8/408) 1:8 to QC_BAD because prior to dive start 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/408) 1:8 172:185 408 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (23/408) 1:8 172:185 408 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 08:22:18 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:22:18 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 4 interp_salinity data_points in_between 238 241 % suspect thermal-inertia points 238 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/408) 399 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.28 cm/s 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.75 cm/s 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:22:18 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (45/408) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (3/408) 2 3 176 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:22:18 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/408) 407 to QC_BAD because slow flow in SBE43 08:22:18 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (45/408) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (3/408) 2 3 176 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (23/408) 1:8 172:185 408 to QC_BAD because changed salinity implies changed optode oxygen 08:22:18 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/408) 399 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 08:22:18 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:22:18 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 08:22:19 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 4: Data set size for profile, binned and kkyy files reduced by 23 points, a 5.64% reduction 08:22:19 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.4 08:22:19 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:22:19 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:22:19 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:22:19 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 08:22:19 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 08:22:19 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 08:22:19 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 08:22:19 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 08:22:20 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:22:20 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:22:20 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:22:20 24 Mar 2016 UTC /home/sg146/p1460004.log /home/sg146/p1460004.eng /home/sg146/p1460004.asc /home/sg146/p1460004.pro /home/sg146/p1460004.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 08:22:20 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:22:20 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:22:20 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:22:20 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 08:22:20 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 08:22:20 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:22:20 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:22:20 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:22:20 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 08:22:20 24 Mar 2016 UTC 09:56:00 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 9582 09:56:00 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:57:33 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 9739 09:57:33 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:57:33 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 09:57:33 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 09:57:33 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160323235732 ] 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1333): PID:9746 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 09:57:33 24 Mar 2016 UTC 09:57:33 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 09:57:33 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 09:57:33 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 09:57:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:57:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 09:57:33 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:1 call_cycle:0 2126.5000 -15703.9430 03/24/16 09:54:23 UTC) to sdrifter@soest.hawaii.edu 09:57:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:57:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:1 call_cycle:0 09:57:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 09:57:33 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:57:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:33 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:57:33 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:57:33 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 09:57:33 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:57:33 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:57:33 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 09:57:33 24 Mar 2016 UTC 09:59:27 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10146 09:59:27 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:00:59 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10298 10:00:59 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:00:59 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:00:59 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:00:59 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324000058 ] 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1333): PID:10305 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 10:00:59 24 Mar 2016 UTC 10:00:59 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:00:59 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:00:59 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:00:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:00:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:2 call_cycle:0 10:00:59 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:2 call_cycle:0 2126.5000 -15703.9430 03/24/16 09:54:23 UTC) to sdrifter@soest.hawaii.edu 10:00:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:2 call_cycle:0 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:00:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:2 call_cycle:0 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:2 call_cycle:0 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:2 call_cycle:0 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:2 call_cycle:0 10:00:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:00:59 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:00:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:00:59 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:00:59 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:00:59 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:00:59 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:00:59 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:00:59 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 10:00:59 24 Mar 2016 UTC 10:02:47 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10618 10:02:47 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:04:22 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10715 10:04:22 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:04:22 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:04:22 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:04:22 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:04:22 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324000422 ] 10:04:22 24 Mar 2016 UTC: INFO: Base.py(1333): PID:10722 10:04:22 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 10:04:22 24 Mar 2016 UTC 10:04:22 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:04:22 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:04:22 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:04:22 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:04:22 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:04:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:04:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:3 call_cycle:0 10:04:22 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:3 call_cycle:0 2126.5000 -15703.9430 03/24/16 09:54:23 UTC) to sdrifter@soest.hawaii.edu 10:04:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:3 call_cycle:0 10:04:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:04:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:3 call_cycle:0 10:04:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:04:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:3 call_cycle:0 10:04:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:04:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:3 call_cycle:0 10:04:22 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:04:22 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:3 call_cycle:0 10:04:22 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:04:22 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:04:23 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:04:23 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:04:23 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:04:23 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:04:23 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:04:23 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:04:23 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:04:23 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 10:04:23 24 Mar 2016 UTC 10:08:40 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10977 10:08:40 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:09:46 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 11048 10:09:46 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:09:46 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:09:46 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:09:46 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324000945 ] 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1333): PID:11055 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 10:09:46 24 Mar 2016 UTC 10:09:46 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:09:46 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:09:46 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:09:46 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:09:46 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:5 call_cycle:0 10:09:46 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:5 calls_made:5 call_cycle:0 2126.5000 -15703.9430 03/24/16 09:54:23 UTC) to sdrifter@soest.hawaii.edu 10:09:46 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:5 call_cycle:0 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:09:46 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:5 call_cycle:0 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:5 call_cycle:0 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:5 call_cycle:0 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:5 calls_made:5 call_cycle:0 10:09:46 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:09:46 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.5 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:09:46 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:46 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:09:46 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:09:46 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:09:46 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:09:46 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:09:46 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 10:09:46 24 Mar 2016 UTC 11:38:55 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 13405 11:38:55 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:44:04 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 13805 11:44:04 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:44:04 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:44:04 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:44:04 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:44:04 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324014404 ] 11:44:04 24 Mar 2016 UTC: INFO: Base.py(1333): PID:13813 11:44:04 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 11:44:04 24 Mar 2016 UTC 11:44:04 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:44:04 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:44:04 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:44:04 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:44:04 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:44:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:44:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 11:44:04 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:6 calls_made:1 call_cycle:0 2127.5740 -15702.9690 03/24/16 11:37:23 UTC) to sdrifter@soest.hawaii.edu 11:44:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 11:44:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:44:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 11:44:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:44:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 11:44:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:44:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 11:44:04 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:44:04 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:1 call_cycle:0 11:44:04 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:04 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:44:04 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:44:05 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0005lz 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0005lz.1a.x00 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0005lz.1a.x01 11:44:05 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0005lz.r in process_file_group 11:44:05 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460005.log 11:44:05 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:44:05 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0005dz 11:44:05 24 Mar 2016 UTC: INFO: Bogue.py(156): Eliminated duplicate data at 1152 to 896 in /home/sg146/sg0005dz.x02.PARTIAL.1 11:44:05 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0005dz.x02.PARTIAL.1 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0005dz.1a.x00 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0005dz.1a.x01 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0005dz.x02.PARTIAL.b.1a.1 11:44:05 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0005dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 11:44:05 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0006lz 11:44:05 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0006lz.x00 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0006lz.b.1a.x00 11:44:05 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0006lz.r in process_file_group 11:44:05 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460006.log 11:44:05 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:44:05 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0006dz 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0006dz.1a.x00 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0006dz.1a.x01 11:44:05 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0006dz.1a.x02 11:44:05 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0006dz.r in process_file_group 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [5, 6] 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [5, 6] 11:44:05 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460005) for profiles 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 11:44:05 24 Mar 2016 UTC: INFO: QC.py(365): Changed (10/404) 5 178 182:187 390 397 to QC_PROBABLY_BAD because raw temperature spikes 11:44:05 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/404) 404 to QC_BAD because raw salinity below bound 11:44:05 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/404) 404 to QC_BAD because bad raw salinity indicates raw conductivity issues 11:44:05 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/404) 397 to QC_PROBABLY_BAD because raw conductivity spikes 11:44:05 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <53 pt uncorrectable 235.4m SUSPECT weak conductivity anomaly n:-0.30 p:0.28> 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (10/404) 5 178 182:187 390 397 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:44:05 24 Mar 2016 UTC: INFO: QC.py(365): Changed (10/404) 5 178 182:187 390 397 to QC_INTERPOLATED because temperature spikes 11:44:05 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/404) 404 to QC_BAD because salinity below bound 11:44:05 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/404) 404 to QC_BAD because bad salinity indicates conductivity issues 11:44:05 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/404) 397 to QC_INTERPOLATED because conductivity spikes 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (14/404) 176:189 to QC_BAD because slow apogee CT flow 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (8/404) 1:8 to QC_BAD because prior to dive start 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/404) 1:8 176:189 404 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (23/404) 1:8 176:189 404 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 11:44:05 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 403 11:44:05 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:44:05 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 5 interp_salinity data_points in_between 235 248 % suspect thermal-inertia points 243 244 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/404) 390 397 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/404) 390 397 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.18 cm/s 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.91 cm/s 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:44:05 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (43/404) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/404) 5 186 390 397 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:44:05 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/404) 403 to QC_BAD because slow flow in SBE43 11:44:05 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (43/404) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/404) 5 186 390 397 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:44:05 24 Mar 2016 UTC: INFO: QC.py(180): Changed (23/404) 1:8 176:189 404 to QC_BAD because changed salinity implies changed optode oxygen 11:44:05 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:44:05 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 5: Data set size for profile, binned and kkyy files reduced by 23 points, a 5.69% reduction 11:44:06 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460006) for profiles 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 11:44:06 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(2034): No trustworthy GPS values; assuming average latitude of 21.5 degrees 11:44:06 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(2041): $GPS2 untrustworthy; assuming magnetic variance of 9.9 degrees 11:44:06 24 Mar 2016 UTC: INFO: QC.py(365): Changed (7/378) 6 7 173 177 178 369 370 to QC_PROBABLY_BAD because raw temperature spikes 11:44:06 24 Mar 2016 UTC: INFO: QC.py(408): Changed (3/378) 6 178 370 to QC_PROBABLY_BAD because raw conductivity spikes 11:44:06 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <19 pt uncorrectable 96.2m SUSPECT weak conductivity anomaly n:-0.30 p:0.31> 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (7/378) 6 7 173 177 178 369 370 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:44:06 24 Mar 2016 UTC: INFO: QC.py(365): Changed (7/378) 6 7 173 177 178 369 370 to QC_INTERPOLATED because temperature spikes 11:44:06 24 Mar 2016 UTC: INFO: QC.py(408): Changed (3/378) 6 178 370 to QC_INTERPOLATED because conductivity spikes 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (11/378) 170:180 to QC_BAD because slow apogee CT flow 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (9/378) 1:9 to QC_BAD because prior to dive start 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/378) 1:9 170:180 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (20/378) 1:9 170:180 to QC_BAD because changed corrected salin implies changed speed 11:44:06 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/378) 369 370 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/378) 369 370 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 37.85 cm/s 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.69 cm/s 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:44:06 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (38/378) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/378) 6 7 369 370 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:44:06 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (38/378) 150 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/378) 6 7 369 370 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:44:06 24 Mar 2016 UTC: INFO: QC.py(180): Changed (20/378) 1:9 170:180 to QC_BAD because changed salinity implies changed optode oxygen 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:44:06 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(3667): Unable to determine surface drift 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3746): Skipping DAC computation. 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 6: Data set size for profile, binned and kkyy files reduced by 20 points, a 5.29% reduction 11:44:06 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.6 11:44:06 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:44:06 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:44:06 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 11:44:06 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 11:44:07 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 11:44:07 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 11:44:07 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 11:44:08 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:44:08 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:44:08 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:44:08 24 Mar 2016 UTC /home/sg146/p1460005.log /home/sg146/p1460005.eng /home/sg146/p1460006.log /home/sg146/p1460006.eng /home/sg146/p1460005.asc /home/sg146/p1460006.asc /home/sg146/p1460005.pro /home/sg146/p1460005.nc /home/sg146/p1460006.pro /home/sg146/p1460006.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 11:44:08 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:08 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:44:08 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:44:08 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:44:08 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:44:08 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:44:08 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:44:08 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:44:08 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 11:44:08 24 Mar 2016 UTC 11:47:52 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 13992 11:47:52 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:49:34 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14222 11:49:34 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:49:34 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:49:34 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:49:34 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324014934 ] 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1333): PID:14229 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 11:49:34 24 Mar 2016 UTC 11:49:34 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:49:34 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:49:34 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:49:34 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:49:34 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:49:34 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:2 call_cycle:0 11:49:34 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:6 calls_made:2 call_cycle:0 2127.5740 -15702.9690 03/24/16 11:37:23 UTC) to sdrifter@soest.hawaii.edu 11:49:34 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:2 call_cycle:0 11:49:34 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:49:34 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:2 call_cycle:0 11:49:34 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:49:34 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:2 call_cycle:0 11:49:34 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:49:34 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:2 call_cycle:0 11:49:34 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:49:34 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:2 call_cycle:0 11:49:34 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:49:34 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:49:35 24 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.6 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:49:35 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:49:35 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:49:35 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:49:35 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:49:35 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:49:35 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:49:35 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 11:49:35 24 Mar 2016 UTC 11:51:23 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14584 11:51:23 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:52:20 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14649 11:52:20 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:52:20 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:52:20 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:52:20 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324015219 ] 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1333): PID:14657 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 11:52:20 24 Mar 2016 UTC 11:52:20 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:52:20 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:52:20 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:52:20 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:52:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:52:20 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:3 call_cycle:0 11:52:20 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:6 calls_made:3 call_cycle:0 2127.5740 -15702.9690 03/24/16 11:37:23 UTC) to sdrifter@soest.hawaii.edu 11:52:20 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:3 call_cycle:0 11:52:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:52:20 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:3 call_cycle:0 11:52:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:52:20 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:3 call_cycle:0 11:52:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:52:20 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:3 call_cycle:0 11:52:20 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:52:20 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:6 calls_made:3 call_cycle:0 11:52:20 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:52:20 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:52:20 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0005dz 11:52:20 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0005dz.x02 11:52:20 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0005dz.1a.x00 11:52:20 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0005dz.1a.x01 11:52:20 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0005dz.b.1a.x02 11:52:20 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0005dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [5] 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [5] 11:52:20 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460005) for profiles 11:52:20 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 11:52:20 24 Mar 2016 UTC: INFO: QC.py(365): Changed (10/404) 5 178 182:187 390 397 to QC_PROBABLY_BAD because raw temperature spikes 11:52:20 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/404) 404 to QC_BAD because raw salinity below bound 11:52:20 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/404) 404 to QC_BAD because bad raw salinity indicates raw conductivity issues 11:52:20 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/404) 397 to QC_PROBABLY_BAD because raw conductivity spikes 11:52:20 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <53 pt uncorrectable 235.4m SUSPECT weak conductivity anomaly n:-0.30 p:0.28> 11:52:20 24 Mar 2016 UTC: INFO: QC.py(180): Changed (10/404) 5 178 182:187 390 397 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:52:20 24 Mar 2016 UTC: INFO: QC.py(365): Changed (10/404) 5 178 182:187 390 397 to QC_INTERPOLATED because temperature spikes 11:52:20 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/404) 404 to QC_BAD because salinity below bound 11:52:20 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/404) 404 to QC_BAD because bad salinity indicates conductivity issues 11:52:20 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/404) 397 to QC_INTERPOLATED because conductivity spikes 11:52:20 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (14/404) 176:189 to QC_BAD because slow apogee CT flow 11:52:20 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (8/404) 1:8 to QC_BAD because prior to dive start 11:52:20 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/404) 1:8 176:189 404 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:52:20 24 Mar 2016 UTC: INFO: QC.py(180): Changed (23/404) 1:8 176:189 404 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 11:52:20 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 403 11:52:21 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:52:21 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 5 interp_salinity data_points in_between 235 248 % suspect thermal-inertia points 243 244 11:52:21 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/404) 390 397 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:52:21 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/404) 390 397 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 35.18 cm/s 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.91 cm/s 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:52:21 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (43/404) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:52:21 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/404) 5 186 390 397 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:52:21 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/404) 403 to QC_BAD because slow flow in SBE43 11:52:21 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (43/404) 157:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:52:21 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/404) 5 186 390 397 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:52:21 24 Mar 2016 UTC: INFO: QC.py(180): Changed (23/404) 1:8 176:189 404 to QC_BAD because changed salinity implies changed optode oxygen 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:52:21 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 5: Data set size for profile, binned and kkyy files reduced by 23 points, a 5.69% reduction 11:52:21 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.6 11:52:21 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:52:21 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:52:21 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 11:52:21 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 11:52:22 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 11:52:22 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 11:52:22 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 11:52:23 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:52:23 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:52:23 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:52:23 24 Mar 2016 UTC /home/sg146/p1460005.eng /home/sg146/p1460005.asc /home/sg146/p1460005.pro /home/sg146/p1460005.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 11:52:23 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:52:23 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:52:23 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:52:23 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:52:23 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:52:23 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:52:23 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:52:23 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:52:23 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 11:52:23 24 Mar 2016 UTC 13:32:54 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19154 13:32:54 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:35:41 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19267 13:35:41 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:35:41 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 13:35:41 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 13:35:41 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324033540 ] 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1333): PID:19274 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 13:35:41 24 Mar 2016 UTC 13:35:41 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 13:35:41 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 13:35:41 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 13:35:41 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:35:41 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:35:41 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 13:35:41 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:7 calls_made:1 call_cycle:0 2128.7360 -15702.3130 03/24/16 13:31:20 UTC) to sdrifter@soest.hawaii.edu 13:35:41 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 13:35:41 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:35:41 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 13:35:41 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:35:41 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 13:35:41 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:35:41 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 13:35:41 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:35:41 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:7 calls_made:1 call_cycle:0 13:35:41 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:35:41 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 13:35:41 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0007lz 13:35:41 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0007lz.1a.x00 13:35:41 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0007lz.1a.x01 13:35:41 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0007lz.r in process_file_group 13:35:41 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460007.log 13:35:41 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 13:35:41 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0007dz 13:35:41 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0007dz.x02 13:35:41 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0007dz.1a.x00 13:35:41 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0007dz.1a.x01 13:35:41 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0007dz.b.1a.x02 13:35:41 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0007dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [7] 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [7] 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460007) for profiles 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 13:35:42 24 Mar 2016 UTC: INFO: QC.py(365): Changed (9/407) 2 3 8 171 173 177:179 181 to QC_PROBABLY_BAD because raw temperature spikes 13:35:42 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/407) 407 to QC_BAD because raw salinity below bound 13:35:42 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/407) 407 to QC_BAD because bad raw salinity indicates raw conductivity issues 13:35:42 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <51 pt uncorrectable 205.0m SUSPECT weak conductivity anomaly n:-0.27 p:0.28> 13:35:42 24 Mar 2016 UTC: INFO: QC.py(180): Changed (9/407) 2 3 8 171 173 177:179 181 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:35:42 24 Mar 2016 UTC: INFO: QC.py(365): Changed (9/407) 2 3 8 171 173 177:179 181 to QC_INTERPOLATED because temperature spikes 13:35:42 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/407) 407 to QC_BAD because salinity below bound 13:35:42 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/407) 407 to QC_BAD because bad salinity indicates conductivity issues 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (18/407) 168:185 to QC_BAD because slow apogee CT flow 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/407) 1:15 to QC_BAD because prior to dive start 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (34/407) 1:15 168:185 407 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:35:42 24 Mar 2016 UTC: INFO: QC.py(180): Changed (34/407) 1:15 168:185 407 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 13:35:42 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 34.06 cm/s 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.50 cm/s 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:35:42 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (49/407) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:35:42 24 Mar 2016 UTC: INFO: QC.py(180): Changed (5/407) 2 3 8 171 181 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:35:42 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/407) 406 to QC_BAD because slow flow in SBE43 13:35:42 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (49/407) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 13:35:42 24 Mar 2016 UTC: INFO: QC.py(180): Changed (5/407) 2 3 8 171 181 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:35:42 24 Mar 2016 UTC: INFO: QC.py(180): Changed (34/407) 1:15 168:185 407 to QC_BAD because changed salinity implies changed optode oxygen 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:35:42 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 13:35:42 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 7: Data set size for profile, binned and kkyy files reduced by 34 points, a 8.35% reduction 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.7 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:35:42 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:35:43 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 13:35:43 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 13:35:44 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 13:35:44 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 13:35:44 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 13:35:44 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:35:44 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:35:44 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:35:44 24 Mar 2016 UTC /home/sg146/p1460007.log /home/sg146/p1460007.eng /home/sg146/p1460007.asc /home/sg146/p1460007.pro /home/sg146/p1460007.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 13:35:44 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:44 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:35:44 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:35:44 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 13:35:44 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 13:35:44 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:35:44 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:35:44 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:35:44 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 13:35:44 24 Mar 2016 UTC 15:18:26 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22974 15:18:26 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:21:44 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23300 15:21:44 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:21:44 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 15:21:44 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 15:21:44 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:21:44 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324052144 ] 15:21:44 24 Mar 2016 UTC: INFO: Base.py(1333): PID:23307 15:21:44 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 15:21:44 24 Mar 2016 UTC 15:21:44 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 15:21:44 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 15:21:44 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 15:21:44 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 15:21:44 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:21:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:21:44 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 15:21:44 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:8 calls_made:1 call_cycle:0 2129.8490 -15702.2080 03/24/16 15:16:54 UTC) to sdrifter@soest.hawaii.edu 15:21:44 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 15:21:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:21:44 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 15:21:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:21:44 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 15:21:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:21:44 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 15:21:44 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:21:44 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:8 calls_made:1 call_cycle:0 15:21:44 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:21:44 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 15:21:45 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0008lz 15:21:45 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0008lz.x01 15:21:45 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0008lz.1a.x00 15:21:45 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0008lz.b.1a.x01 15:21:45 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0008lz.r in process_file_group 15:21:45 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460008.log 15:21:45 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 15:21:45 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0008dz 15:21:45 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0008dz.1a.x00 15:21:45 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0008dz.1a.x01 15:21:45 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0008dz.1a.x02 15:21:45 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0008dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [8] 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [8] 15:21:45 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460008) for profiles 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2567): Changed (1/427) 426 to QC_BAD because conductivity exceeds frequency bounds 15:21:45 24 Mar 2016 UTC: INFO: QC.py(365): Changed (5/427) 4 6 8 9 174 to QC_PROBABLY_BAD because raw temperature spikes 15:21:45 24 Mar 2016 UTC: INFO: QC.py(377): Changed (3/427) 425:427 to QC_BAD because raw salinity below bound 15:21:45 24 Mar 2016 UTC: INFO: QC.py(388): Changed (2/427) 425 427 to QC_BAD because bad raw salinity indicates raw conductivity issues 15:21:45 24 Mar 2016 UTC: INFO: QC.py(408): Changed (4/427) 4 5 7 236 to QC_PROBABLY_BAD because raw conductivity spikes 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (5/427) 4 6 8 9 174 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (3/427) 5 7 236 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:21:45 24 Mar 2016 UTC: INFO: QC.py(365): Changed (5/427) 4 6 8 9 174 to QC_INTERPOLATED because temperature spikes 15:21:45 24 Mar 2016 UTC: INFO: QC.py(377): Changed (3/427) 425:427 to QC_BAD because salinity below bound 15:21:45 24 Mar 2016 UTC: INFO: QC.py(388): Changed (2/427) 425 427 to QC_BAD because bad salinity indicates conductivity issues 15:21:45 24 Mar 2016 UTC: INFO: QC.py(408): Changed (4/427) 4 5 7 236 to QC_INTERPOLATED because conductivity spikes 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (11/427) 171:181 to QC_BAD because slow apogee CT flow 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/427) 1:15 to QC_BAD because prior to dive start 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (29/427) 1:15 171:181 425:427 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (29/427) 1:15 171:181 425:427 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 15:21:45 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:21:45 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 8 interp_salinity data_points in_between 225 234 % suspect thermal-inertia points 225 226 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/427) 236 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 29.69 cm/s 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.76 cm/s 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:21:45 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (46/427) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/427) 4 6 8 9 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:21:45 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/427) 182 to QC_BAD because slow flow in SBE43 15:21:45 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (46/427) 152:155 157:160 162:165 167:170 172:175 177:180 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/427) 4 6 8 9 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (29/427) 1:15 171:181 425:427 to QC_BAD because changed salinity implies changed optode oxygen 15:21:45 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/427) 236 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 15:21:45 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:21:45 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 15:21:46 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 8: Data set size for profile, binned and kkyy files reduced by 29 points, a 6.79% reduction 15:21:46 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.8 15:21:46 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:21:46 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:21:46 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:21:46 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 15:21:46 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 15:21:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 15:21:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 15:21:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 15:21:48 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:21:48 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:21:48 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:21:48 24 Mar 2016 UTC /home/sg146/p1460008.log /home/sg146/p1460008.eng /home/sg146/p1460008.asc /home/sg146/p1460008.pro /home/sg146/p1460008.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 15:21:48 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:21:48 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:21:48 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:21:48 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 15:21:48 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 15:21:48 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:21:48 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:21:48 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:21:48 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 15:21:48 24 Mar 2016 UTC 16:50:04 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26755 16:50:04 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:52:09 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26932 16:52:09 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:52:09 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 16:52:09 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 16:52:09 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324065208 ] 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1333): PID:26939 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 16:52:09 24 Mar 2016 UTC 16:52:09 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 16:52:09 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 16:52:09 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 16:52:09 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:52:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:52:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:1 call_cycle:0 16:52:09 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:9 calls_made:1 call_cycle:0 2130.7960 -15702.2120 03/24/16 16:48:35 UTC) to sdrifter@soest.hawaii.edu 16:52:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:1 call_cycle:0 16:52:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:52:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:1 call_cycle:0 16:52:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:52:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:1 call_cycle:0 16:52:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:52:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:1 call_cycle:0 16:52:09 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:52:09 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:9 calls_made:1 call_cycle:0 16:52:09 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 16:52:09 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0009lz 16:52:09 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0009lz.1a.x00 16:52:09 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0009lz.r in process_file_group 16:52:09 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460009.log 16:52:09 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 16:52:09 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0009dz 16:52:09 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0009dz.x02 16:52:09 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0009dz.1a.x00 16:52:09 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0009dz.1a.x01 16:52:09 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0009dz.b.1a.x02 16:52:09 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0009dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [9] 16:52:09 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [9] 16:52:10 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460009) for profiles 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 16:52:10 24 Mar 2016 UTC: INFO: QC.py(365): Changed (9/374) 2 3 5:7 10 13 171 174 to QC_PROBABLY_BAD because raw temperature spikes 16:52:10 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/374) 374 to QC_BAD because raw salinity below bound 16:52:10 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/374) 374 to QC_BAD because bad raw salinity indicates raw conductivity issues 16:52:10 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/374) 123 to QC_PROBABLY_BAD because raw conductivity spikes 16:52:10 24 Mar 2016 UTC: WARNING: MakeDiveProfiles.py(954): Weak resolved anomaly skipped: <43 pt uncorrectable 197.4m SUSPECT weak conductivity anomaly n:-0.28 p:0.26> 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (9/374) 2 3 5:7 10 13 171 174 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/374) 123 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:52:10 24 Mar 2016 UTC: INFO: QC.py(365): Changed (9/374) 2 3 5:7 10 13 171 174 to QC_INTERPOLATED because temperature spikes 16:52:10 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/374) 374 to QC_BAD because salinity below bound 16:52:10 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/374) 374 to QC_BAD because bad salinity indicates conductivity issues 16:52:10 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/374) 123 to QC_INTERPOLATED because conductivity spikes 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (9/374) 168:176 to QC_BAD because slow apogee CT flow 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/374) 1:15 to QC_BAD because prior to dive start 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/374) 373 to QC_BAD because end of climb 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (26/374) 1:15 168:176 373 374 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (26/374) 1:15 168:176 373 374 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 16:52:10 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/374) 123 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 37.17 cm/s 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.57 cm/s 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:52:10 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (39/374) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (8/374) 2 3 5:7 10 13 171 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:52:10 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (39/374) 147:150 152:155 157:160 162:165 167:170 172:175 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (8/374) 2 3 5:7 10 13 171 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (26/374) 1:15 168:176 373 374 to QC_BAD because changed salinity implies changed optode oxygen 16:52:10 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/374) 123 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:52:10 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 9: Data set size for profile, binned and kkyy files reduced by 26 points, a 6.95% reduction 16:52:10 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.9 16:52:10 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:52:10 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:52:10 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 16:52:10 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 16:52:12 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 16:52:12 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 16:52:12 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 16:52:13 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:52:13 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:52:13 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:52:13 24 Mar 2016 UTC /home/sg146/p1460009.log /home/sg146/p1460009.eng /home/sg146/p1460009.asc /home/sg146/p1460009.pro /home/sg146/p1460009.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 16:52:13 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:52:13 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:52:13 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:52:13 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 16:52:13 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 16:52:13 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:52:13 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:52:13 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:52:13 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 16:52:13 24 Mar 2016 UTC 18:42:03 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30670 18:42:03 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:44:23 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30796 18:44:23 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:44:23 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 18:44:23 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 18:44:23 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324084422 ] 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1333): PID:30803 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 18:44:23 24 Mar 2016 UTC 18:44:23 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 18:44:23 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 18:44:23 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 18:44:23 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:44:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:10 calls_made:1 call_cycle:0 2131.5980 -15702.5270 03/24/16 18:40:29 UTC) to sdrifter@soest.hawaii.edu 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:44:23 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:10 calls_made:1 call_cycle:0 18:44:23 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:44:23 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 18:44:23 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0010lz 18:44:23 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0010lz.x01 18:44:23 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0010lz.1a.x00 18:44:23 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0010lz.b.1a.x01 18:44:23 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0010lz.r in process_file_group 18:44:23 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460010.log 18:44:23 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 18:44:23 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0010dz 18:44:23 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0010dz.x02 18:44:23 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0010dz.1a.x00 18:44:23 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0010dz.1a.x01 18:44:23 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0010dz.b.1a.x02 18:44:23 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0010dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [10] 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [10] 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460010) for profiles 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 18:44:24 24 Mar 2016 UTC: INFO: QC.py(365): Changed (12/452) 3 6 8 134 135 191 193 263 265 271 450 451 to QC_PROBABLY_BAD because raw temperature spikes 18:44:24 24 Mar 2016 UTC: INFO: QC.py(408): Changed (10/452) 2 6 7 134 135 263 265 271:273 to QC_PROBABLY_BAD because raw conductivity spikes 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (12/452) 3 6 8 134 135 191 193 263 265 271 450 451 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/452) 2 7 272 273 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:44:24 24 Mar 2016 UTC: INFO: QC.py(365): Changed (12/452) 3 6 8 134 135 191 193 263 265 271 450 451 to QC_INTERPOLATED because temperature spikes 18:44:24 24 Mar 2016 UTC: INFO: QC.py(408): Changed (10/452) 2 6 7 134 135 263 265 271:273 to QC_INTERPOLATED because conductivity spikes 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (19/452) 188:206 to QC_BAD because slow apogee CT flow 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/452) 1:15 to QC_BAD because prior to dive start 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/452) 450:452 to QC_BAD because end of climb 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (37/452) 1:15 188:206 450:452 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (37/452) 1:15 188:206 450:452 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 18:44:24 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (5/452) 134 135 263 265 271 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/452) 272 273 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (5/452) 134 135 263 265 271 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.16 cm/s 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.47 cm/s 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:44:24 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (52/452) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (11/452) 3 6 8 134 135 191 263 265 271 450 451 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:44:24 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (52/452) 167:170 172:175 177:180 182:185 187:190 192:195 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (11/452) 3 6 8 134 135 191 263 265 271 450 451 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (37/452) 1:15 188:206 450:452 to QC_BAD because changed salinity implies changed optode oxygen 18:44:24 24 Mar 2016 UTC: INFO: QC.py(180): Changed (2/452) 272 273 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:44:24 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 10: Data set size for profile, binned and kkyy files reduced by 37 points, a 8.19% reduction 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.10 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:44:24 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 18:44:24 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 18:44:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 66, max_depth_dive_num = 3 18:44:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 18:44:27 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 18:44:27 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:44:27 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:44:27 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:44:27 24 Mar 2016 UTC /home/sg146/p1460010.log /home/sg146/p1460010.eng /home/sg146/p1460010.asc /home/sg146/p1460010.pro /home/sg146/p1460010.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 18:44:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:44:27 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:44:27 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:44:27 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 18:44:27 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 18:44:27 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:44:27 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:44:27 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:44:27 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 18:44:27 24 Mar 2016 UTC 21:02:43 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2546 21:02:43 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:05:35 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2649 21:05:35 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:05:35 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 21:05:35 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 21:05:35 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324110534 ] 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1333): PID:2656 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 21:05:35 24 Mar 2016 UTC 21:05:35 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 21:05:35 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 21:05:35 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 21:05:35 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:05:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:11 calls_made:1 call_cycle:0 2132.4080 -15702.3930 03/24/16 21:01:04 UTC) to sdrifter@soest.hawaii.edu 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:05:35 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:11 calls_made:1 call_cycle:0 21:05:35 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 21:05:35 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0011lz 21:05:35 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0011lz.x01 21:05:35 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0011lz.1a.x00 21:05:35 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0011lz.b.1a.x01 21:05:35 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0011lz.r in process_file_group 21:05:35 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460011.log 21:05:35 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 21:05:35 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0011dz 21:05:35 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0011dz.x02 21:05:35 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0011dz.1a.x00 21:05:35 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0011dz.1a.x01 21:05:35 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0011dz.b.1a.x02 21:05:35 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0011dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [11] 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [11] 21:05:35 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460011) for profiles 21:05:35 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 21:05:36 24 Mar 2016 UTC: INFO: QC.py(365): Changed (8/500) 3:7 232 346 498 to QC_PROBABLY_BAD because raw temperature spikes 21:05:36 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/500) 500 to QC_BAD because raw salinity below bound 21:05:36 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/500) 500 to QC_BAD because bad raw salinity indicates raw conductivity issues 21:05:36 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/500) 341 to QC_PROBABLY_BAD because raw conductivity spikes 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (8/500) 3:7 232 346 498 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/500) 341 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:05:36 24 Mar 2016 UTC: INFO: QC.py(365): Changed (8/500) 3:7 232 346 498 to QC_INTERPOLATED because temperature spikes 21:05:36 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/500) 500 to QC_BAD because salinity below bound 21:05:36 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/500) 500 to QC_BAD because bad salinity indicates conductivity issues 21:05:36 24 Mar 2016 UTC: INFO: QC.py(408): Changed (1/500) 341 to QC_INTERPOLATED because conductivity spikes 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (7/500) 229:235 to QC_BAD because slow apogee CT flow 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/500) 1:15 to QC_BAD because prior to dive start 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/500) 498 499 to QC_BAD because end of climb 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (25/500) 1:15 229:235 498:500 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (25/500) 1:15 229:235 498:500 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 21:05:36 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 4 stalled points 236:239 21:05:36 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/500) 346 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/500) 341 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/500) 346 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.21 cm/s 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.31 cm/s 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:05:36 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (84/500) 187:190 192:195 197:200 202:205 207:210 212:215 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (7/500) 3:7 346 498 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:05:36 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (5/500) 236:240 to QC_BAD because slow flow in SBE43 21:05:36 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (84/500) 187:190 192:195 197:200 202:205 207:210 212:215 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (7/500) 3:7 346 498 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (25/500) 1:15 229:235 498:500 to QC_BAD because changed salinity implies changed optode oxygen 21:05:36 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/500) 341 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:05:36 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 11: Data set size for profile, binned and kkyy files reduced by 25 points, a 5.00% reduction 21:05:36 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.11 21:05:36 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:05:36 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:05:36 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 21:05:36 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 21:05:39 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 82, max_depth_dive_num = 11 21:05:39 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 21:05:39 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 21:05:39 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:05:39 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:05:39 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:05:39 24 Mar 2016 UTC /home/sg146/p1460011.log /home/sg146/p1460011.eng /home/sg146/p1460011.asc /home/sg146/p1460011.pro /home/sg146/p1460011.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 21:05:39 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:05:39 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:05:39 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:05:39 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 21:05:39 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 21:05:39 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:05:39 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:05:39 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:05:39 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 21:05:39 24 Mar 2016 UTC 23:51:45 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7617 23:51:45 24 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {S} 23:55:46 24 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7732 23:55:46 24 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:55:46 24 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:55:46 24 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:55:46 24 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:55:46 24 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324135546 ] 23:55:46 24 Mar 2016 UTC: INFO: Base.py(1333): PID:7739 23:55:46 24 Mar 2016 UTC: INFO: Base.py(1375): Started processing 23:55:46 24 Mar 2016 UTC 23:55:46 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:55:46 24 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:55:46 24 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:55:47 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:55:47 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:12 calls_made:1 call_cycle:0 2134.2790 -15702.1460 03/24/16 23:50:05 UTC) to sdrifter@soest.hawaii.edu 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:55:47 24 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:12 calls_made:1 call_cycle:0 23:55:47 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:55:47 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0012lz 23:55:47 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0012lz.x01 23:55:47 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0012lz.1a.x00 23:55:47 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0012lz.b.1a.x01 23:55:47 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0012lz.r in process_file_group 23:55:47 24 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460012.log 23:55:47 24 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 23:55:47 24 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0012dz 23:55:47 24 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0012dz.x02 23:55:47 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.1a.x00 23:55:47 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.1a.x01 23:55:47 24 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0012dz.b.1a.x02 23:55:47 24 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0012dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [12] 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [12] 23:55:47 24 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460012) for profiles 23:55:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 23:55:47 24 Mar 2016 UTC: INFO: QC.py(365): Changed (9/524) 3:5 9:11 326 327 522 to QC_PROBABLY_BAD because raw temperature spikes 23:55:47 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/524) 524 to QC_BAD because raw salinity below bound 23:55:47 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/524) 524 to QC_BAD because bad raw salinity indicates raw conductivity issues 23:55:47 24 Mar 2016 UTC: INFO: QC.py(408): Changed (8/524) 2 8 9 13 230 326 327 522 to QC_PROBABLY_BAD because raw conductivity spikes 23:55:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/524) 523 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 23:55:47 24 Mar 2016 UTC: INFO: QC.py(180): Changed (9/524) 3:5 9:11 326 327 522 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:55:47 24 Mar 2016 UTC: INFO: QC.py(180): Changed (4/524) 2 8 13 230 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:55:47 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/524) 523 to QC_BAD because changed raw cond implies changed raw salinity 23:55:47 24 Mar 2016 UTC: INFO: QC.py(365): Changed (9/524) 3:5 9:11 326 327 522 to QC_INTERPOLATED because temperature spikes 23:55:47 24 Mar 2016 UTC: INFO: QC.py(377): Changed (1/524) 524 to QC_BAD because salinity below bound 23:55:47 24 Mar 2016 UTC: INFO: QC.py(388): Changed (1/524) 524 to QC_BAD because bad salinity indicates conductivity issues 23:55:47 24 Mar 2016 UTC: INFO: QC.py(408): Changed (8/524) 2 8 9 13 230 326 327 522 to QC_INTERPOLATED because conductivity spikes 23:55:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/524) 523 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 23:55:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (7/524) 224:230 to QC_BAD because slow apogee CT flow 23:55:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/524) 1:15 to QC_BAD because prior to dive start 23:55:47 24 Mar 2016 UTC: INFO: QC.py(488): Changed (1/524) 522 to QC_PROBABLY_BAD because bad interpolation anchors 23:55:47 24 Mar 2016 UTC: INFO: QC.py(489): SUGGESTION: 12 bad_conductivity data_points in_between 520 522 % bad interpolation anchors 23:55:47 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (24/524) 1:15 224:230 523 524 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:55:47 24 Mar 2016 UTC: INFO: QC.py(180): Changed (24/524) 1:15 224:230 523 524 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 23:55:48 24 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 3 iterations 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (3/524) 326 327 522 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/524) 522 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (3/524) 326 327 522 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.79 cm/s 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.26 cm/s 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:55:48 24 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (123/524) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (9/524) 3:5 9:11 326 327 522 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:55:48 24 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (5/524) 231:235 to QC_BAD because slow flow in SBE43 23:55:48 24 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (123/524) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (9/524) 3:5 9:11 326 327 522 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (1/524) 522 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 23:55:48 24 Mar 2016 UTC: INFO: QC.py(180): Changed (24/524) 1:15 224:230 523 524 to QC_BAD because changed salinity implies changed optode oxygen 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:55:48 24 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 12: Data set size for profile, binned and kkyy files reduced by 24 points, a 4.58% reduction 23:55:48 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.12 23:55:48 24 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.12 23:55:48 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:55:48 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:55:48 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 23:55:48 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 23:55:51 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 23:55:51 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 23:55:51 24 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 23:55:52 24 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:55:52 24 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:55:52 24 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:55:52 24 Mar 2016 UTC /home/sg146/p1460012.log /home/sg146/p1460012.eng /home/sg146/p1460012.asc /home/sg146/p1460012.pro /home/sg146/p1460012.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 23:55:52 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:55:52 24 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:55:52 24 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:55:52 24 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:55:52 24 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:55:52 24 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:55:52 24 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:55:52 24 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:55:52 24 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 23:55:52 24 Mar 2016 UTC 02:39:43 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 12076 02:39:43 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {S} 02:44:53 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 12307 02:44:53 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:44:53 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:44:53 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:44:53 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324164452 ] 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1333): PID:12314 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 02:44:53 25 Mar 2016 UTC 02:44:53 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:44:53 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:44:53 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:44:53 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:44:53 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:13 calls_made:1 call_cycle:0 2135.8930 -15702.1200 03/25/16 02:37:53 UTC) to sdrifter@soest.hawaii.edu 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:44:53 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:13 calls_made:1 call_cycle:0 02:44:53 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:44:53 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:44:53 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0013lz 02:44:53 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0013lz.x01 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013lz.1a.x00 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0013lz.b.1a.x01 02:44:53 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0013lz.r in process_file_group 02:44:53 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460013.log 02:44:53 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 02:44:53 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0013dz 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x00 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x01 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x02 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x03 02:44:53 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x04 02:44:53 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0013dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 02:44:54 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [13] 02:44:54 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [13] 02:44:54 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460013) for profiles 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 02:44:54 25 Mar 2016 UTC: INFO: QC.py(365): Changed (8/796) 3 7 8 10 12 354 356 358 to QC_PROBABLY_BAD because raw temperature spikes 02:44:54 25 Mar 2016 UTC: INFO: QC.py(408): Changed (4/796) 3 6 11 359 to QC_PROBABLY_BAD because raw conductivity spikes 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/796) 796 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 02:44:54 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/796) 3 7 8 10 12 354 356 358 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:44:54 25 Mar 2016 UTC: INFO: QC.py(180): Changed (3/796) 6 11 359 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:44:54 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/796) 796 to QC_BAD because changed raw cond implies changed raw salinity 02:44:54 25 Mar 2016 UTC: INFO: QC.py(365): Changed (8/796) 3 7 8 10 12 354 356 358 to QC_INTERPOLATED because temperature spikes 02:44:54 25 Mar 2016 UTC: INFO: QC.py(408): Changed (4/796) 3 6 11 359 to QC_INTERPOLATED because conductivity spikes 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/796) 796 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (7/796) 353:359 to QC_BAD because slow apogee CT flow 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/796) 1:15 to QC_BAD because prior to dive start 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/796) 794 795 to QC_BAD because end of climb 02:44:54 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:44:54 25 Mar 2016 UTC: INFO: QC.py(180): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 02:44:57 25 Mar 2016 UTC: WARNING: TempSalinityVelocity.py(965): Unable to converge on TSV corrections 02:44:57 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 20 iterations 02:44:57 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 13 interp_salinity data_points in_between 361 374 % suspect thermal-inertia points 363 365 366 02:44:57 25 Mar 2016 UTC: INFO: QC.py(180): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because changed corrected salin implies changed speed 02:44:58 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 10 iterations 02:44:58 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 13 interp_salinity data_points in_between 361 367 % suspect thermal-inertia points 363:365 02:44:58 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.55 cm/s 02:44:58 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.90 cm/s 02:44:58 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:44:58 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (45/796) 334 335 337:340 342:345 347:350 352:355 357:360 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:44:58 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/796) 3 7 8 10 12 356 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:44:58 25 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (7/796) 360:366 to QC_BAD because slow flow in SBE43 02:44:58 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (45/796) 334 335 337:340 342:345 347:350 352:355 357:360 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 02:44:58 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/796) 3 7 8 10 12 356 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:44:58 25 Mar 2016 UTC: INFO: QC.py(180): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because changed salinity implies changed optode oxygen 02:44:58 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:44:58 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 02:44:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 13: Data set size for profile, binned and kkyy files reduced by 25 points, a 3.14% reduction 02:44:59 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.13 02:44:59 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.13 02:44:59 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:44:59 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:44:59 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:44:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 02:44:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 02:45:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 02:45:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 02:45:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 02:45:03 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:45:03 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:45:03 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:45:03 25 Mar 2016 UTC /home/sg146/p1460013.log /home/sg146/p1460013.eng /home/sg146/p1460013.asc /home/sg146/p1460013.pro /home/sg146/p1460013.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 02:45:03 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:03 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:45:03 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:45:03 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:45:03 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:45:03 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:45:03 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:45:03 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:45:03 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 02:45:03 25 Mar 2016 UTC 03:03:12 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 13324 03:03:12 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {S} 03:03:15 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 13375 03:03:15 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:03:15 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:03:15 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:03:15 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:03:15 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324170314 ] 03:03:15 25 Mar 2016 UTC: INFO: Base.py(1333): PID:13382 03:03:15 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:03:15 25 Mar 2016 UTC 03:03:15 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:03:15 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:03:15 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:03:15 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:03:15 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:03:15 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:03:15 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 03:03:15 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:03:15 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:03:15 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:03:16 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0012lz 03:03:16 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0012lz.x01 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0012lz.1a.x00 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0012lz.b.1a.x01 03:03:16 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0012lz.r in process_file_group 03:03:16 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460012.log 03:03:16 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:03:16 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0012dz 03:03:16 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0012dz.x02 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.1a.x00 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0012dz.1a.x01 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0012dz.b.1a.x02 03:03:16 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0012dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 03:03:16 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0013lz 03:03:16 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0013lz.x01 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013lz.1a.x00 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0013lz.b.1a.x01 03:03:16 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0013lz.r in process_file_group 03:03:16 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460013.log 03:03:16 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:03:16 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0013dz 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x00 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x01 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x02 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x03 03:03:16 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0013dz.1a.x04 03:03:16 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0013dz.r in process_file_group 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [12, 13] 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [12, 13] 03:03:16 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460012) for profiles 03:03:16 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 03:03:16 25 Mar 2016 UTC: INFO: QC.py(365): Changed (9/524) 3:5 9:11 326 327 522 to QC_PROBABLY_BAD because raw temperature spikes 03:03:16 25 Mar 2016 UTC: INFO: QC.py(377): Changed (1/524) 524 to QC_BAD because raw salinity below bound 03:03:16 25 Mar 2016 UTC: INFO: QC.py(388): Changed (1/524) 524 to QC_BAD because bad raw salinity indicates raw conductivity issues 03:03:16 25 Mar 2016 UTC: INFO: QC.py(408): Changed (8/524) 2 8 9 13 230 326 327 522 to QC_PROBABLY_BAD because raw conductivity spikes 03:03:16 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/524) 523 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 03:03:16 25 Mar 2016 UTC: INFO: QC.py(180): Changed (9/524) 3:5 9:11 326 327 522 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:03:16 25 Mar 2016 UTC: INFO: QC.py(180): Changed (4/524) 2 8 13 230 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:03:16 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/524) 523 to QC_BAD because changed raw cond implies changed raw salinity 03:03:16 25 Mar 2016 UTC: INFO: QC.py(365): Changed (9/524) 3:5 9:11 326 327 522 to QC_INTERPOLATED because temperature spikes 03:03:16 25 Mar 2016 UTC: INFO: QC.py(377): Changed (1/524) 524 to QC_BAD because salinity below bound 03:03:16 25 Mar 2016 UTC: INFO: QC.py(388): Changed (1/524) 524 to QC_BAD because bad salinity indicates conductivity issues 03:03:16 25 Mar 2016 UTC: INFO: QC.py(408): Changed (8/524) 2 8 9 13 230 326 327 522 to QC_INTERPOLATED because conductivity spikes 03:03:16 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/524) 523 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 03:03:16 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (7/524) 224:230 to QC_BAD because slow apogee CT flow 03:03:16 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/524) 1:15 to QC_BAD because prior to dive start 03:03:16 25 Mar 2016 UTC: INFO: QC.py(488): Changed (1/524) 522 to QC_PROBABLY_BAD because bad interpolation anchors 03:03:16 25 Mar 2016 UTC: INFO: QC.py(489): SUGGESTION: 12 bad_conductivity data_points in_between 520 522 % bad interpolation anchors 03:03:16 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (24/524) 1:15 224:230 523 524 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:03:16 25 Mar 2016 UTC: INFO: QC.py(180): Changed (24/524) 1:15 224:230 523 524 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 03:03:17 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 3 iterations 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (3/524) 326 327 522 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/524) 522 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (3/524) 326 327 522 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.79 cm/s 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 4.26 cm/s 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:03:17 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (123/524) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (9/524) 3:5 9:11 326 327 522 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:03:17 25 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (5/524) 231:235 to QC_BAD because slow flow in SBE43 03:03:17 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (123/524) 158:160 162:165 167:170 172:175 177:180 182:185 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (9/524) 3:5 9:11 326 327 522 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/524) 522 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (24/524) 1:15 224:230 523 524 to QC_BAD because changed salinity implies changed optode oxygen 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:03:17 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 12: Data set size for profile, binned and kkyy files reduced by 24 points, a 4.58% reduction 03:03:17 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460013) for profiles 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:03:17 25 Mar 2016 UTC: INFO: QC.py(365): Changed (8/796) 3 7 8 10 12 354 356 358 to QC_PROBABLY_BAD because raw temperature spikes 03:03:17 25 Mar 2016 UTC: INFO: QC.py(408): Changed (4/796) 3 6 11 359 to QC_PROBABLY_BAD because raw conductivity spikes 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/796) 796 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/796) 3 7 8 10 12 354 356 358 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (3/796) 6 11 359 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/796) 796 to QC_BAD because changed raw cond implies changed raw salinity 03:03:17 25 Mar 2016 UTC: INFO: QC.py(365): Changed (8/796) 3 7 8 10 12 354 356 358 to QC_INTERPOLATED because temperature spikes 03:03:17 25 Mar 2016 UTC: INFO: QC.py(408): Changed (4/796) 3 6 11 359 to QC_INTERPOLATED because conductivity spikes 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/796) 796 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (7/796) 353:359 to QC_BAD because slow apogee CT flow 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/796) 1:15 to QC_BAD because prior to dive start 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/796) 794 795 to QC_BAD because end of climb 03:03:17 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:03:17 25 Mar 2016 UTC: INFO: QC.py(180): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because changed corrected salin implies changed speed 03:03:20 25 Mar 2016 UTC: WARNING: TempSalinityVelocity.py(965): Unable to converge on TSV corrections 03:03:20 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 20 iterations 03:03:20 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 13 interp_salinity data_points in_between 361 374 % suspect thermal-inertia points 363 365 366 03:03:20 25 Mar 2016 UTC: INFO: QC.py(180): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because changed corrected salin implies changed speed 03:03:22 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 10 iterations 03:03:22 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 13 interp_salinity data_points in_between 361 367 % suspect thermal-inertia points 363:365 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.55 cm/s 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.90 cm/s 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:03:22 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (45/796) 334 335 337:340 342:345 347:350 352:355 357:360 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:03:22 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/796) 3 7 8 10 12 356 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:03:22 25 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (7/796) 360:366 to QC_BAD because slow flow in SBE43 03:03:22 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (45/796) 334 335 337:340 342:345 347:350 352:355 357:360 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 03:03:22 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/796) 3 7 8 10 12 356 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:03:22 25 Mar 2016 UTC: INFO: QC.py(180): Changed (25/796) 1:15 353:359 794:796 to QC_BAD because changed salinity implies changed optode oxygen 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 13: Data set size for profile, binned and kkyy files reduced by 25 points, a 3.14% reduction 03:03:22 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.13 03:03:22 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.13 03:03:22 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:03:22 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:03:22 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 03:03:22 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 03:03:25 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 03:03:26 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 03:03:26 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 03:03:26 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:03:26 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:03:26 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:03:26 25 Mar 2016 UTC /home/sg146/p1460012.log /home/sg146/p1460012.eng /home/sg146/p1460013.log /home/sg146/p1460013.eng /home/sg146/p1460012.asc /home/sg146/p1460013.asc /home/sg146/p1460012.pro /home/sg146/p1460012.nc /home/sg146/p1460013.pro /home/sg146/p1460013.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 03:03:26 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:03:26 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:03:26 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:03:26 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:03:26 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:03:26 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:03:26 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:03:26 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:03:26 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:03:26 25 Mar 2016 UTC 05:26:16 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17183 05:26:16 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {S} 05:31:40 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17521 05:31:40 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:31:40 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 05:31:40 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 05:31:40 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324193139 ] 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1333): PID:17528 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 05:31:40 25 Mar 2016 UTC 05:31:40 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 05:31:40 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 05:31:40 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 05:31:40 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:31:40 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:14 calls_made:1 call_cycle:0 2138.6040 -15702.8230 03/25/16 05:24:34 UTC) to sdrifter@soest.hawaii.edu 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:31:40 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:14 calls_made:1 call_cycle:0 05:31:40 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:31:40 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 05:31:40 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0014lz 05:31:40 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0014lz.x01 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0014lz.1a.x00 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0014lz.b.1a.x01 05:31:40 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0014lz.r in process_file_group 05:31:40 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460014.log 05:31:40 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 05:31:40 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0014dz 05:31:40 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0014dz.x04 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.1a.x00 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.1a.x01 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.1a.x02 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0014dz.1a.x03 05:31:40 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0014dz.b.1a.x04 05:31:40 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0014dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 05:31:41 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [14] 05:31:41 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [14] 05:31:41 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460014) for profiles 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 05:31:41 25 Mar 2016 UTC: INFO: QC.py(365): Changed (7/785) 2 5:7 12 149 355 to QC_PROBABLY_BAD because raw temperature spikes 05:31:41 25 Mar 2016 UTC: INFO: QC.py(377): Changed (2/785) 784 785 to QC_BAD because raw salinity below bound 05:31:41 25 Mar 2016 UTC: INFO: QC.py(388): Changed (2/785) 784 785 to QC_BAD because bad raw salinity indicates raw conductivity issues 05:31:41 25 Mar 2016 UTC: INFO: QC.py(408): Changed (5/785) 6 7 92 149 356 to QC_PROBABLY_BAD because raw conductivity spikes 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (7/785) 2 5:7 12 149 355 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (2/785) 92 356 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:31:41 25 Mar 2016 UTC: INFO: QC.py(365): Changed (7/785) 2 5:7 12 149 355 to QC_INTERPOLATED because temperature spikes 05:31:41 25 Mar 2016 UTC: INFO: QC.py(377): Changed (2/785) 784 785 to QC_BAD because salinity below bound 05:31:41 25 Mar 2016 UTC: INFO: QC.py(388): Changed (2/785) 784 785 to QC_BAD because bad salinity indicates conductivity issues 05:31:41 25 Mar 2016 UTC: INFO: QC.py(408): Changed (5/785) 6 7 92 149 356 to QC_INTERPOLATED because conductivity spikes 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/785) 352:357 to QC_BAD because slow apogee CT flow 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/785) 1:14 to QC_BAD because prior to dive start 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/785) 783 to QC_BAD because end of climb 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/785) 1:14 352:357 783:785 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/785) 1:14 352:357 783:785 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 05:31:41 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 3 iterations 05:31:41 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 14 interp_salinity data_points in_between 155 169 % suspect thermal-inertia points 156 157 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/785) 149 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/785) 92 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/785) 149 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.17 cm/s 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.88 cm/s 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:31:41 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (46/785) 330 332:335 337:340 342:345 347:350 352:355 357:360 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/785) 2 5:7 12 149 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:31:41 25 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (18/785) 358:375 to QC_BAD because slow flow in SBE43 05:31:41 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (46/785) 330 332:335 337:340 342:345 347:350 352:355 357:360 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/785) 2 5:7 12 149 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/785) 1:14 352:357 783:785 to QC_BAD because changed salinity implies changed optode oxygen 05:31:41 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/785) 92 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 05:31:41 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:31:41 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 05:31:42 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 14: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.93% reduction 05:31:42 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.14 05:31:42 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.14 05:31:42 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:31:42 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:31:42 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:31:42 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 05:31:42 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 05:31:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 05:31:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 05:31:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 05:31:46 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:31:46 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:31:46 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:31:46 25 Mar 2016 UTC /home/sg146/p1460014.log /home/sg146/p1460014.eng /home/sg146/p1460014.asc /home/sg146/p1460014.pro /home/sg146/p1460014.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 05:31:46 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:31:46 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:31:46 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:31:46 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:31:46 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:31:46 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:31:46 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:31:46 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:31:46 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 05:31:46 25 Mar 2016 UTC 08:18:09 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22641 08:18:09 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {S} 08:23:43 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22848 08:23:43 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:23:43 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 08:23:43 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 08:23:43 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:23:43 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160324222343 ] 08:23:43 25 Mar 2016 UTC: INFO: Base.py(1333): PID:22855 08:23:43 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 08:23:43 25 Mar 2016 UTC 08:23:43 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 08:23:43 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 08:23:43 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 08:23:43 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 08:23:43 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:23:43 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:23:43 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:43 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:23:43 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:44 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:15 calls_made:1 call_cycle:0 2141.3130 -15703.5660 03/25/16 08:16:23 UTC) to sdrifter@soest.hawaii.edu 08:23:44 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:23:44 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:23:44 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:23:44 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:23:44 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:15 calls_made:1 call_cycle:0 08:23:44 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 08:23:44 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0015lz 08:23:44 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0015lz.x01 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0015lz.1a.x00 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0015lz.b.1a.x01 08:23:44 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0015lz.r in process_file_group 08:23:44 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460015.log 08:23:44 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 08:23:44 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0015dz 08:23:44 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0015dz.x04 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.1a.x00 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.1a.x01 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.1a.x02 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0015dz.1a.x03 08:23:44 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0015dz.b.1a.x04 08:23:44 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0015dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [15] 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [15] 08:23:44 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460015) for profiles 08:23:44 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 08:23:44 25 Mar 2016 UTC: INFO: QC.py(365): Changed (7/802) 2 5 6 10 12 166 369 to QC_PROBABLY_BAD because raw temperature spikes 08:23:44 25 Mar 2016 UTC: INFO: QC.py(408): Changed (3/802) 4 5 166 to QC_PROBABLY_BAD because raw conductivity spikes 08:23:44 25 Mar 2016 UTC: INFO: QC.py(180): Changed (7/802) 2 5 6 10 12 166 369 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:23:44 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/802) 4 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:23:44 25 Mar 2016 UTC: INFO: QC.py(365): Changed (7/802) 2 5 6 10 12 166 369 to QC_INTERPOLATED because temperature spikes 08:23:44 25 Mar 2016 UTC: INFO: QC.py(408): Changed (3/802) 4 5 166 to QC_INTERPOLATED because conductivity spikes 08:23:44 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/802) 366:371 to QC_BAD because slow apogee CT flow 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/802) 1:15 to QC_BAD because prior to dive start 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/802) 1:15 366:371 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:23:45 25 Mar 2016 UTC: INFO: QC.py(180): Changed (21/802) 1:15 366:371 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 08:23:45 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 802 08:23:45 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:23:45 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/802) 166 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:23:45 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/802) 166 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.58 cm/s 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.72 cm/s 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:23:45 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (47/802) 340 342:345 347:350 352:355 357:360 362:365 367:370 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:23:45 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/802) 2 5 6 10 12 166 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:23:45 25 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/802) 802 to QC_BAD because slow flow in SBE43 08:23:45 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (47/802) 340 342:345 347:350 352:355 357:360 362:365 367:370 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 08:23:45 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/802) 2 5 6 10 12 166 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:23:45 25 Mar 2016 UTC: INFO: QC.py(180): Changed (21/802) 1:15 366:371 to QC_BAD because changed salinity implies changed optode oxygen 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:23:45 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 08:23:45 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 15: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.62% reduction 08:23:45 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.15 08:23:45 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.15 08:23:45 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:23:45 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:23:45 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:23:46 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 08:23:46 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 08:23:49 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 08:23:49 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 08:23:49 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 08:23:50 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:23:50 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:23:50 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:23:50 25 Mar 2016 UTC /home/sg146/p1460015.log /home/sg146/p1460015.eng /home/sg146/p1460015.asc /home/sg146/p1460015.pro /home/sg146/p1460015.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 08:23:50 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:23:50 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:23:50 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:23:50 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 08:23:50 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 08:23:50 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:23:50 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:23:50 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:23:50 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 08:23:50 25 Mar 2016 UTC 11:13:21 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 27673 11:13:21 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 11:18:02 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 27964 11:18:02 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:18:02 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:18:02 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:18:02 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:18:02 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325011802 ] 11:18:02 25 Mar 2016 UTC: INFO: Base.py(1333): PID:27971 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 11:18:03 25 Mar 2016 UTC 11:18:03 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:18:03 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:18:03 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:18:03 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:18:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:16 calls_made:1 call_cycle:0 2143.8650 -15704.0240 03/25/16 11:11:35 UTC) to sdrifter@soest.hawaii.edu 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:18:03 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:16 calls_made:1 call_cycle:0 11:18:03 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:18:03 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0016lz 11:18:03 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0016lz.x01 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0016lz.1a.x00 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0016lz.b.1a.x01 11:18:03 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0016lz.r in process_file_group 11:18:03 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460016.log 11:18:03 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:18:03 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0016dz 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.1a.x00 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.1a.x01 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.1a.x02 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.1a.x03 11:18:03 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0016dz.1a.x04 11:18:03 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0016dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [16] 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [16] 11:18:03 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460016) for profiles 11:18:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 11:18:04 25 Mar 2016 UTC: INFO: QC.py(365): Changed (9/828) 2 5 6 11:13 393:395 to QC_PROBABLY_BAD because raw temperature spikes 11:18:04 25 Mar 2016 UTC: INFO: QC.py(408): Changed (2/828) 74 394 to QC_PROBABLY_BAD because raw conductivity spikes 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (9/828) 2 5 6 11:13 393:395 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/828) 74 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:18:04 25 Mar 2016 UTC: INFO: QC.py(365): Changed (9/828) 2 5 6 11:13 393:395 to QC_INTERPOLATED because temperature spikes 11:18:04 25 Mar 2016 UTC: INFO: QC.py(408): Changed (2/828) 74 394 to QC_INTERPOLATED because conductivity spikes 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/828) 391:396 to QC_BAD because slow apogee CT flow 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/828) 1:14 to QC_BAD because prior to dive start 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/828) 826:828 to QC_BAD because end of climb 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/828) 1:14 391:396 826:828 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/828) 1:14 391:396 826:828 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 11:18:04 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:18:04 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 16 interp_salinity data_points in_between 144 178 % suspect thermal-inertia points 165 166 175 11:18:04 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 16 interp_salinity data_points in_between 528 536 % suspect thermal-inertia points 535 11:18:04 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 16 interp_salinity data_points in_between 589 606 % suspect thermal-inertia points 595 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/828) 74 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.89 cm/s 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.63 cm/s 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:18:04 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (47/828) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/828) 2 5 6 11:13 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:18:04 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (47/828) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/828) 2 5 6 11:13 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/828) 1:14 391:396 826:828 to QC_BAD because changed salinity implies changed optode oxygen 11:18:04 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/828) 74 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:18:04 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 11:18:04 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 16: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.78% reduction 11:18:05 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.16 11:18:05 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.16 11:18:05 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.16 11:18:05 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:18:05 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:18:05 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:18:05 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 11:18:05 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 11:18:09 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 11:18:09 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 11:18:09 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 11:18:10 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:18:10 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:18:10 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:18:10 25 Mar 2016 UTC /home/sg146/p1460016.log /home/sg146/p1460016.eng /home/sg146/p1460016.asc /home/sg146/p1460016.pro /home/sg146/p1460016.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 11:18:10 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:18:10 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:18:10 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:18:10 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:18:10 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:18:10 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:18:10 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:18:10 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:18:10 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 11:18:10 25 Mar 2016 UTC 14:06:17 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 32281 14:06:17 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 14:10:36 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 32476 14:10:36 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:10:36 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:10:36 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:10:36 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:10:36 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325041036 ] 14:10:36 25 Mar 2016 UTC: INFO: Base.py(1333): PID:32483 14:10:36 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 14:10:36 25 Mar 2016 UTC 14:10:36 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:10:36 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:10:36 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:10:36 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:10:36 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:10:36 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:17 calls_made:1 call_cycle:0 2145.5360 -15704.1680 03/25/16 14:04:35 UTC) to sdrifter@soest.hawaii.edu 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:10:36 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:17 calls_made:1 call_cycle:0 14:10:36 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:10:36 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:10:37 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0017lz 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0017lz.1a.x00 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0017lz.1a.x01 14:10:37 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0017lz.r in process_file_group 14:10:37 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460017.log 14:10:37 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:10:37 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0017dz 14:10:37 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0017dz.x04 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.1a.x00 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.1a.x01 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.1a.x02 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0017dz.1a.x03 14:10:37 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0017dz.b.1a.x04 14:10:37 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0017dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [17] 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [17] 14:10:37 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460017) for profiles 14:10:37 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 14:10:37 25 Mar 2016 UTC: INFO: QC.py(365): Changed (6/810) 3 5 6 10 12 390 to QC_PROBABLY_BAD because raw temperature spikes 14:10:37 25 Mar 2016 UTC: INFO: QC.py(408): Changed (2/810) 4 390 to QC_PROBABLY_BAD because raw conductivity spikes 14:10:37 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/810) 3 5 6 10 12 390 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:10:37 25 Mar 2016 UTC: INFO: QC.py(180): Changed (1/810) 4 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:10:37 25 Mar 2016 UTC: INFO: QC.py(365): Changed (6/810) 3 5 6 10 12 390 to QC_INTERPOLATED because temperature spikes 14:10:37 25 Mar 2016 UTC: INFO: QC.py(408): Changed (2/810) 4 390 to QC_INTERPOLATED because conductivity spikes 14:10:37 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/810) 387:392 to QC_BAD because slow apogee CT flow 14:10:37 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/810) 1:14 to QC_BAD because prior to dive start 14:10:37 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/810) 808:810 to QC_BAD because end of climb 14:10:37 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/810) 1:14 387:392 808:810 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:10:37 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/810) 1:14 387:392 808:810 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 14:10:38 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:10:38 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 17 interp_salinity data_points in_between 579 591 % suspect thermal-inertia points 582 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.39 cm/s 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.82 cm/s 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:10:38 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (48/810) 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:10:38 25 Mar 2016 UTC: INFO: QC.py(180): Changed (5/810) 3 5 6 10 12 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:10:38 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (48/810) 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 14:10:38 25 Mar 2016 UTC: INFO: QC.py(180): Changed (5/810) 3 5 6 10 12 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:10:38 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/810) 1:14 387:392 808:810 to QC_BAD because changed salinity implies changed optode oxygen 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:10:38 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 17: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.84% reduction 14:10:38 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.17 14:10:38 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.17 14:10:38 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.17 14:10:38 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:10:38 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:10:38 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 14:10:38 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 14:10:43 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 14:10:43 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 14:10:43 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 14:10:44 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:10:44 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:10:44 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:10:44 25 Mar 2016 UTC /home/sg146/p1460017.log /home/sg146/p1460017.eng /home/sg146/p1460017.asc /home/sg146/p1460017.pro /home/sg146/p1460017.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 14:10:44 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:10:44 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:10:44 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:10:44 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:10:44 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:10:44 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:10:44 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:10:44 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:10:44 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 14:10:44 25 Mar 2016 UTC 17:01:40 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 4727 17:01:40 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 17:08:01 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 4967 17:08:01 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:08:01 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 17:08:01 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 17:08:01 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:08:01 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325070801 ] 17:08:01 25 Mar 2016 UTC: INFO: Base.py(1333): PID:4974 17:08:01 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 17:08:01 25 Mar 2016 UTC 17:08:01 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 17:08:01 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 17:08:01 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 17:08:01 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 17:08:01 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:08:01 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:18 calls_made:1 call_cycle:0 2147.1180 -15704.7050 03/25/16 16:59:56 UTC) to sdrifter@soest.hawaii.edu 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:08:01 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:18 calls_made:1 call_cycle:0 17:08:01 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:08:01 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 17:08:02 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0018lz 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018lz.1a.x00 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018lz.1a.x01 17:08:02 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0018lz.r in process_file_group 17:08:02 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460018.log 17:08:02 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 17:08:02 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0018dz 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.1a.x00 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.1a.x01 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.1a.x02 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.1a.x03 17:08:02 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0018dz.1a.x04 17:08:02 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0018dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [18] 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [18] 17:08:02 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460018) for profiles 17:08:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 17:08:02 25 Mar 2016 UTC: INFO: QC.py(365): Changed (8/836) 2:7 11 12 to QC_PROBABLY_BAD because raw temperature spikes 17:08:02 25 Mar 2016 UTC: INFO: QC.py(408): Changed (3/836) 5:7 to QC_PROBABLY_BAD because raw conductivity spikes 17:08:02 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/836) 2:7 11 12 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:08:02 25 Mar 2016 UTC: INFO: QC.py(365): Changed (8/836) 2:7 11 12 to QC_INTERPOLATED because temperature spikes 17:08:02 25 Mar 2016 UTC: INFO: QC.py(408): Changed (3/836) 5:7 to QC_INTERPOLATED because conductivity spikes 17:08:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/836) 401:406 to QC_BAD because slow apogee CT flow 17:08:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/836) 1:15 to QC_BAD because prior to dive start 17:08:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/836) 835 836 to QC_BAD because end of climb 17:08:02 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/836) 1:15 401:406 835 836 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:08:02 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/836) 1:15 401:406 835 836 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 17:08:03 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:08:03 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 18 interp_salinity data_points in_between 149 171 % suspect thermal-inertia points 167:169 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.46 cm/s 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.93 cm/s 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:08:03 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (47/836) 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:08:03 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/836) 2:7 11 12 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:08:03 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (48/836) 377:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 17:08:03 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/836) 2:7 11 12 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:08:03 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/836) 1:15 401:406 835 836 to QC_BAD because changed salinity implies changed optode oxygen 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:08:03 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 18: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.75% reduction 17:08:03 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.18 17:08:03 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.18 17:08:03 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.18 17:08:03 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:08:03 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:08:03 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 17:08:03 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 17:08:08 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 17:08:08 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 17:08:08 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 17:08:09 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:08:09 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:08:09 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:08:09 25 Mar 2016 UTC /home/sg146/p1460018.log /home/sg146/p1460018.eng /home/sg146/p1460018.asc /home/sg146/p1460018.pro /home/sg146/p1460018.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 17:08:09 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:08:09 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:08:09 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:08:09 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 17:08:09 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 17:08:09 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:08:09 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:08:09 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:08:09 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 17:08:09 25 Mar 2016 UTC 19:56:21 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 9348 19:56:21 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 20:00:06 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 9622 20:00:06 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:00:06 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 20:00:06 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 20:00:06 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325100005 ] 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1333): PID:9629 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 20:00:06 25 Mar 2016 UTC 20:00:06 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 20:00:06 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 20:00:06 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 20:00:06 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:00:06 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:19 calls_made:1 call_cycle:0 2148.9180 -15705.4630 03/25/16 19:54:34 UTC) to sdrifter@soest.hawaii.edu 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:00:06 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:19 calls_made:1 call_cycle:0 20:00:06 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:00:06 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 20:00:06 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0019lz 20:00:06 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0019lz.x01 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0019lz.1a.x00 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0019lz.b.1a.x01 20:00:06 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0019lz.r in process_file_group 20:00:06 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460019.log 20:00:06 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 20:00:06 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0019dz 20:00:06 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0019dz.x04 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.1a.x00 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.1a.x01 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.1a.x02 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0019dz.1a.x03 20:00:06 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0019dz.b.1a.x04 20:00:06 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0019dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 20:00:07 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [19] 20:00:07 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [19] 20:00:07 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460019) for profiles 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 20:00:07 25 Mar 2016 UTC: INFO: QC.py(365): Changed (9/813) 2 4 6:8 11:13 392 to QC_PROBABLY_BAD because raw temperature spikes 20:00:07 25 Mar 2016 UTC: INFO: QC.py(408): Changed (1/813) 4 to QC_PROBABLY_BAD because raw conductivity spikes 20:00:07 25 Mar 2016 UTC: INFO: QC.py(180): Changed (9/813) 2 4 6:8 11:13 392 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:00:07 25 Mar 2016 UTC: INFO: QC.py(365): Changed (9/813) 2 4 6:8 11:13 392 to QC_INTERPOLATED because temperature spikes 20:00:07 25 Mar 2016 UTC: INFO: QC.py(408): Changed (1/813) 4 to QC_INTERPOLATED because conductivity spikes 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/813) 390:395 to QC_BAD because slow apogee CT flow 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/813) 1:15 to QC_BAD because prior to dive start 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/813) 812 813 to QC_BAD because end of climb 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/813) 1:15 390:395 812 813 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:00:07 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/813) 1:15 390:395 812 813 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 20:00:07 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:00:07 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 19 interp_salinity data_points in_between 207 215 % suspect thermal-inertia points 210 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.60 cm/s 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.83 cm/s 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:00:07 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (47/813) 363:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:00:07 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/813) 2 4 6:8 11:13 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:00:07 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (47/813) 363:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 20:00:07 25 Mar 2016 UTC: INFO: QC.py(180): Changed (8/813) 2 4 6:8 11:13 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:00:07 25 Mar 2016 UTC: INFO: QC.py(180): Changed (23/813) 1:15 390:395 812 813 to QC_BAD because changed salinity implies changed optode oxygen 20:00:07 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:00:07 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 20:00:08 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 19: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.83% reduction 20:00:08 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.19 20:00:08 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.19 20:00:08 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.19 20:00:08 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:00:08 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:00:08 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:00:08 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 20:00:08 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 20:00:13 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 20:00:13 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 20:00:13 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 20:00:14 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:00:14 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:00:14 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:00:14 25 Mar 2016 UTC /home/sg146/p1460019.log /home/sg146/p1460019.eng /home/sg146/p1460019.asc /home/sg146/p1460019.pro /home/sg146/p1460019.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 20:00:14 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:00:14 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:00:14 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:00:14 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 20:00:14 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 20:00:14 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:00:14 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:00:14 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:00:14 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 20:00:14 25 Mar 2016 UTC 22:48:19 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14636 22:48:19 25 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:53:57 25 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14946 22:53:57 25 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:53:57 25 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:53:57 25 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:53:57 25 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:53:57 25 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325125357 ] 22:53:57 25 Mar 2016 UTC: INFO: Base.py(1333): PID:14953 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1375): Started processing 22:53:58 25 Mar 2016 UTC 22:53:58 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:53:58 25 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:53:58 25 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:53:58 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:53:58 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:20 calls_made:1 call_cycle:0 2150.9350 -15705.7060 03/25/16 22:46:35 UTC) to sdrifter@soest.hawaii.edu 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:53:58 25 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:20 calls_made:1 call_cycle:0 22:53:58 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:53:58 25 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:53:58 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0020lz 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0020lz.1a.x00 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0020lz.1a.x01 22:53:58 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0020lz.r in process_file_group 22:53:58 25 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460020.log 22:53:58 25 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 22:53:58 25 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0020dz 22:53:58 25 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0020dz.x04 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.1a.x00 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.1a.x01 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.1a.x02 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0020dz.1a.x03 22:53:58 25 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0020dz.b.1a.x04 22:53:58 25 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0020dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 22:53:59 25 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [20] 22:53:59 25 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [20] 22:53:59 25 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460020) for profiles 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 22:53:59 25 Mar 2016 UTC: INFO: QC.py(365): Changed (6/802) 3:5 8 12 390 to QC_PROBABLY_BAD because raw temperature spikes 22:53:59 25 Mar 2016 UTC: INFO: QC.py(408): Changed (3/802) 2 6 390 to QC_PROBABLY_BAD because raw conductivity spikes 22:53:59 25 Mar 2016 UTC: INFO: QC.py(180): Changed (6/802) 3:5 8 12 390 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:53:59 25 Mar 2016 UTC: INFO: QC.py(180): Changed (2/802) 2 6 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:53:59 25 Mar 2016 UTC: INFO: QC.py(365): Changed (6/802) 3:5 8 12 390 to QC_INTERPOLATED because temperature spikes 22:53:59 25 Mar 2016 UTC: INFO: QC.py(408): Changed (3/802) 2 6 390 to QC_INTERPOLATED because conductivity spikes 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/802) 387:392 to QC_BAD because slow apogee CT flow 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/802) 1:15 to QC_BAD because prior to dive start 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/802) 1:15 387:392 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:53:59 25 Mar 2016 UTC: INFO: QC.py(180): Changed (21/802) 1:15 387:392 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 22:53:59 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:53:59 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 20 interp_salinity data_points in_between 155 161 % suspect thermal-inertia points 159 22:53:59 25 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 20 interp_salinity data_points in_between 576 593 % suspect thermal-inertia points 580 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.92 cm/s 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.86 cm/s 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:53:59 25 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (50/802) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:53:59 25 Mar 2016 UTC: INFO: QC.py(180): Changed (5/802) 3:5 8 12 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:53:59 25 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (50/802) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 22:53:59 25 Mar 2016 UTC: INFO: QC.py(180): Changed (5/802) 3:5 8 12 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:53:59 25 Mar 2016 UTC: INFO: QC.py(180): Changed (21/802) 1:15 387:392 to QC_BAD because changed salinity implies changed optode oxygen 22:53:59 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:53:59 25 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 22:54:00 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 20: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.62% reduction 22:54:00 25 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.20 22:54:00 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:54:00 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:54:00 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:54:00 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 22:54:00 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 22:54:05 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 22:54:05 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 22:54:05 25 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 22:54:07 25 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:54:07 25 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:54:07 25 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:54:07 25 Mar 2016 UTC /home/sg146/p1460020.log /home/sg146/p1460020.eng /home/sg146/p1460020.asc /home/sg146/p1460020.pro /home/sg146/p1460020.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 22:54:07 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:54:07 25 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:54:07 25 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:54:07 25 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:54:07 25 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:54:07 25 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:54:07 25 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:54:07 25 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:54:07 25 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 22:54:07 25 Mar 2016 UTC 01:40:04 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19742 01:40:04 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:44:38 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19955 01:44:38 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:44:38 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:44:38 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:44:38 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:44:38 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325154438 ] 01:44:38 26 Mar 2016 UTC: INFO: Base.py(1333): PID:19962 01:44:38 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 01:44:38 26 Mar 2016 UTC 01:44:38 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:44:38 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:44:38 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 01:44:38 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:44:38 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:44:38 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:38 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:38 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:44:38 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:38 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:21 calls_made:1 call_cycle:0 2152.7030 -15705.8910 03/26/16 01:38:20 UTC) to sdrifter@soest.hawaii.edu 01:44:39 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:39 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:44:39 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:39 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:44:39 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:39 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:44:39 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:39 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:44:39 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:21 calls_made:1 call_cycle:0 01:44:39 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:44:39 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0021lz 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0021lz.1a.x00 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0021lz.1a.x01 01:44:39 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0021lz.r in process_file_group 01:44:39 26 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460021.log 01:44:39 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 01:44:39 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0021dz 01:44:39 26 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0021dz.x04 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.1a.x00 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.1a.x01 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.1a.x02 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0021dz.1a.x03 01:44:39 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0021dz.b.1a.x04 01:44:39 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0021dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [21] 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [21] 01:44:39 26 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460021) for profiles 01:44:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 01:44:40 26 Mar 2016 UTC: INFO: QC.py(365): Changed (8/793) 2 5 8:11 13 14 to QC_PROBABLY_BAD because raw temperature spikes 01:44:40 26 Mar 2016 UTC: INFO: QC.py(377): Changed (1/793) 793 to QC_BAD because raw salinity below bound 01:44:40 26 Mar 2016 UTC: INFO: QC.py(388): Changed (1/793) 793 to QC_BAD because bad raw salinity indicates raw conductivity issues 01:44:40 26 Mar 2016 UTC: INFO: QC.py(408): Changed (2/793) 4 380 to QC_PROBABLY_BAD because raw conductivity spikes 01:44:40 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/793) 2 5 8:11 13 14 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:44:40 26 Mar 2016 UTC: INFO: QC.py(180): Changed (2/793) 4 380 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:44:40 26 Mar 2016 UTC: INFO: QC.py(365): Changed (8/793) 2 5 8:11 13 14 to QC_INTERPOLATED because temperature spikes 01:44:40 26 Mar 2016 UTC: INFO: QC.py(377): Changed (1/793) 793 to QC_BAD because salinity below bound 01:44:40 26 Mar 2016 UTC: INFO: QC.py(388): Changed (1/793) 793 to QC_BAD because bad salinity indicates conductivity issues 01:44:40 26 Mar 2016 UTC: INFO: QC.py(408): Changed (2/793) 4 380 to QC_INTERPOLATED because conductivity spikes 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/793) 376:381 to QC_BAD because slow apogee CT flow 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/793) 1:15 to QC_BAD because prior to dive start 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/793) 792 to QC_BAD because end of climb 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/793) 1:15 376:381 792 793 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:44:40 26 Mar 2016 UTC: INFO: QC.py(180): Changed (23/793) 1:15 376:381 792 793 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 01:44:40 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:44:40 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 21 interp_salinity data_points in_between 137 145 % suspect thermal-inertia points 143 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 33.22 cm/s 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.41 cm/s 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:44:40 26 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (50/793) 349 350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:44:40 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/793) 2 5 8:11 13 14 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:44:40 26 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (50/793) 349 350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 01:44:40 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/793) 2 5 8:11 13 14 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:44:40 26 Mar 2016 UTC: INFO: QC.py(180): Changed (23/793) 1:15 376:381 792 793 to QC_BAD because changed salinity implies changed optode oxygen 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:44:40 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 01:44:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 21: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.90% reduction 01:44:41 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.21 01:44:41 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:44:41 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:44:41 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:44:41 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 01:44:41 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 01:44:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 104, max_depth_dive_num = 12 01:44:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 01:44:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 01:44:48 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:44:48 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:44:48 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:44:48 26 Mar 2016 UTC /home/sg146/p1460021.log /home/sg146/p1460021.eng /home/sg146/p1460021.asc /home/sg146/p1460021.pro /home/sg146/p1460021.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 01:44:48 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:48 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:44:48 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:44:48 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:44:48 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:44:48 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:44:48 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:44:48 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:44:48 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 01:44:48 26 Mar 2016 UTC 05:37:06 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26522 05:37:06 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:40:44 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26694 05:40:44 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:40:44 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 05:40:44 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 05:40:44 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:40:44 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325194044 ] 05:40:44 26 Mar 2016 UTC: INFO: Base.py(1333): PID:26701 05:40:44 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 05:40:44 26 Mar 2016 UTC 05:40:44 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 05:40:44 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 05:40:44 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 05:40:44 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 05:40:44 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:40:44 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:22 calls_made:2 call_cycle:0 2154.2990 -15705.7440 03/26/16 05:33:22 UTC) to sdrifter@soest.hawaii.edu 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:40:44 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:22 calls_made:2 call_cycle:0 05:40:44 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:40:44 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 05:40:45 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0022lz 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0022lz.1a.x00 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0022lz.1a.x01 05:40:45 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0022lz.r in process_file_group 05:40:45 26 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460022.log 05:40:45 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 05:40:45 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0022dz 05:40:45 26 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0022dz.x04 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.1a.x00 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.1a.x01 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.1a.x02 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0022dz.1a.x03 05:40:45 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0022dz.b.1a.x04 05:40:45 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0022dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [22] 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [22] 05:40:45 26 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460022) for profiles 05:40:45 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 05:40:45 26 Mar 2016 UTC: INFO: QC.py(365): Changed (7/912) 3 5:8 13 445 to QC_PROBABLY_BAD because raw temperature spikes 05:40:46 26 Mar 2016 UTC: INFO: QC.py(408): Changed (1/912) 6 to QC_PROBABLY_BAD because raw conductivity spikes 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/912) 912 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 05:40:46 26 Mar 2016 UTC: INFO: QC.py(180): Changed (7/912) 3 5:8 13 445 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:40:46 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/912) 912 to QC_BAD because changed raw cond implies changed raw salinity 05:40:46 26 Mar 2016 UTC: INFO: QC.py(365): Changed (7/912) 3 5:8 13 445 to QC_INTERPOLATED because temperature spikes 05:40:46 26 Mar 2016 UTC: INFO: QC.py(408): Changed (1/912) 6 to QC_INTERPOLATED because conductivity spikes 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/912) 912 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/912) 442:447 to QC_BAD because slow apogee CT flow 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/912) 1:15 to QC_BAD because prior to dive start 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/912) 911 to QC_BAD because end of climb 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/912) 1:15 442:447 911 912 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:40:46 26 Mar 2016 UTC: INFO: QC.py(180): Changed (23/912) 1:15 442:447 911 912 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 05:40:46 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:40:46 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 22 interp_salinity data_points in_between 163 182 % suspect thermal-inertia points 178 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.27 cm/s 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:40:46 26 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (122/912) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:40:46 26 Mar 2016 UTC: INFO: QC.py(180): Changed (6/912) 3 5:8 13 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:40:46 26 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (122/912) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 05:40:46 26 Mar 2016 UTC: INFO: QC.py(180): Changed (6/912) 3 5:8 13 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:40:46 26 Mar 2016 UTC: INFO: QC.py(180): Changed (23/912) 1:15 442:447 911 912 to QC_BAD because changed salinity implies changed optode oxygen 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:40:46 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 05:40:46 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 22: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.52% reduction 05:40:47 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.22 05:40:47 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:40:47 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:40:47 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:40:47 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 05:40:47 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 05:40:53 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 22 05:40:53 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 05:40:53 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 05:40:54 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:40:54 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:40:54 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:40:54 26 Mar 2016 UTC /home/sg146/p1460022.log /home/sg146/p1460022.eng /home/sg146/p1460022.asc /home/sg146/p1460022.pro /home/sg146/p1460022.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 05:40:54 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:40:54 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:40:54 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:40:54 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:40:54 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:40:54 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:40:54 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:40:54 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:40:54 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 05:40:54 26 Mar 2016 UTC 09:37:08 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 931 09:37:08 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:41:16 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 1115 09:41:16 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:41:16 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 09:41:16 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 09:41:16 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:41:16 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160325234115 ] 09:41:16 26 Mar 2016 UTC: INFO: Base.py(1333): PID:1122 09:41:16 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 09:41:16 26 Mar 2016 UTC 09:41:16 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 09:41:16 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 09:41:16 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 09:41:16 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 09:41:16 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:41:16 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:23 calls_made:1 call_cycle:0 2155.7690 -15705.7820 03/26/16 09:35:22 UTC) to sdrifter@soest.hawaii.edu 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:41:16 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:23 calls_made:1 call_cycle:0 09:41:16 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:16 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:41:16 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 09:41:17 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0023lz 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0023lz.1a.x00 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0023lz.1a.x01 09:41:17 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0023lz.r in process_file_group 09:41:17 26 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460023.log 09:41:17 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 09:41:17 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0023dz 09:41:17 26 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0023dz.x04 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.1a.x00 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.1a.x01 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.1a.x02 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0023dz.1a.x03 09:41:17 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0023dz.b.1a.x04 09:41:17 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0023dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [23] 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [23] 09:41:17 26 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460023) for profiles 09:41:17 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 09:41:17 26 Mar 2016 UTC: INFO: QC.py(365): Changed (7/920) 4 5 8 11 443 450 470 to QC_PROBABLY_BAD because raw temperature spikes 09:41:17 26 Mar 2016 UTC: INFO: QC.py(377): Changed (1/920) 920 to QC_BAD because raw salinity below bound 09:41:17 26 Mar 2016 UTC: INFO: QC.py(388): Changed (1/920) 920 to QC_BAD because bad raw salinity indicates raw conductivity issues 09:41:17 26 Mar 2016 UTC: INFO: QC.py(408): Changed (7/920) 4 5 7 416 430 443 470 to QC_PROBABLY_BAD because raw conductivity spikes 09:41:17 26 Mar 2016 UTC: INFO: QC.py(180): Changed (7/920) 4 5 8 11 443 450 470 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:41:17 26 Mar 2016 UTC: INFO: QC.py(180): Changed (3/920) 7 416 430 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:41:17 26 Mar 2016 UTC: INFO: QC.py(365): Changed (7/920) 4 5 8 11 443 450 470 to QC_INTERPOLATED because temperature spikes 09:41:17 26 Mar 2016 UTC: INFO: QC.py(377): Changed (1/920) 920 to QC_BAD because salinity below bound 09:41:17 26 Mar 2016 UTC: INFO: QC.py(388): Changed (1/920) 920 to QC_BAD because bad salinity indicates conductivity issues 09:41:17 26 Mar 2016 UTC: INFO: QC.py(408): Changed (7/920) 4 5 7 416 430 443 470 to QC_INTERPOLATED because conductivity spikes 09:41:17 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/920) 445:450 to QC_BAD because slow apogee CT flow 09:41:17 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/920) 1:15 to QC_BAD because prior to dive start 09:41:17 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/920) 919 to QC_BAD because end of climb 09:41:17 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (23/920) 1:15 445:450 919 920 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:41:17 26 Mar 2016 UTC: INFO: QC.py(180): Changed (23/920) 1:15 445:450 919 920 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 09:41:18 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (2/920) 443 470 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (2/920) 416 430 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (2/920) 443 470 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.70 cm/s 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.53 cm/s 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:41:18 26 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/920) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (4/920) 4 5 8 11 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:41:18 26 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (126/920) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (4/920) 4 5 8 11 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (23/920) 1:15 445:450 919 920 to QC_BAD because changed salinity implies changed optode oxygen 09:41:18 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/920) 416 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:41:18 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 23: Data set size for profile, binned and kkyy files reduced by 23 points, a 2.50% reduction 09:41:18 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.23 09:41:18 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:41:18 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:41:18 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 09:41:18 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 09:41:25 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 22 09:41:25 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 09:41:25 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 09:41:27 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:41:27 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:41:27 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:41:27 26 Mar 2016 UTC /home/sg146/p1460023.log /home/sg146/p1460023.eng /home/sg146/p1460023.asc /home/sg146/p1460023.pro /home/sg146/p1460023.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 09:41:27 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:27 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:41:27 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:41:27 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 09:41:27 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 09:41:27 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:41:27 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:41:27 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:41:27 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 09:41:27 26 Mar 2016 UTC 13:31:44 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7925 13:31:44 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:33:58 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 8162 13:33:58 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:33:58 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 13:33:58 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 13:33:58 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:33:58 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160326033358 ] 13:33:58 26 Mar 2016 UTC: INFO: Base.py(1333): PID:8170 13:33:58 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 13:33:58 26 Mar 2016 UTC 13:33:58 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 13:33:58 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 13:33:58 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 13:33:59 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:24 calls_made:1 call_cycle:0 2155.5760 -15705.9860 03/26/16 13:29:34 UTC) to sdrifter@soest.hawaii.edu 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:1 call_cycle:0 13:33:59 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0024lz 13:33:59 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024lz.1a.x00 13:33:59 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024lz.1a.x01 13:33:59 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0024lz.r in process_file_group 13:33:59 26 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460024.log 13:33:59 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 13:33:59 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0024dz 13:33:59 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.1a.x00 13:33:59 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0024dz.r in process_file_group 13:33:59 26 Mar 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0024dz.r - expected 0x1506472729, generated 0x850e4350 13:33:59 26 Mar 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0024dz.r - expected 0x88f8c81f, generated 0x31f5 13:33:59 26 Mar 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0024dz.r - skipping 13:33:59 26 Mar 2016 UTC: ERROR: Base.py(272): Could not process sg0024dz - skipping 13:33:59 26 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [24] 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.24 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:33:59 26 Mar 2016 UTC: ERROR: Base.py(1960): Dive [24] failed to process completely. The following files were not processed completely: /home/sg146/sg0024dz.r Glider logout not seen - retransmissions from glider possible Consult baselog_160326033358 for details. 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:33:59 26 Mar 2016 UTC /home/sg146/p1460024.log 13:33:59 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:33:59 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:33:59 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:33:59 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 13:33:59 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:33:59 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:33:59 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 13:33:59 26 Mar 2016 UTC 13:36:42 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 8364 13:36:42 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:40:01 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 8553 13:40:01 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:40:01 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 13:40:01 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 13:40:01 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:40:01 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160326034000 ] 13:40:01 26 Mar 2016 UTC: INFO: Base.py(1333): PID:8560 13:40:01 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 13:40:01 26 Mar 2016 UTC 13:40:01 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 13:40:01 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 13:40:01 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 13:40:01 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 13:40:01 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:40:01 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:24 calls_made:2 call_cycle:0 2155.5760 -15705.9860 03/26/16 13:29:34 UTC) to sdrifter@soest.hawaii.edu 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:40:01 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:24 calls_made:2 call_cycle:0 13:40:01 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:01 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 13:40:02 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 13:40:02 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0024dz 13:40:02 26 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0024dz.x04 13:40:02 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.1a.x00 13:40:02 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.1a.x01 13:40:02 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.1a.x02 13:40:02 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0024dz.1a.x03 13:40:02 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0024dz.b.1a.x04 13:40:02 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0024dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [24] 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [24] 13:40:02 26 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460024) for profiles 13:40:02 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 13:40:02 26 Mar 2016 UTC: INFO: QC.py(365): Changed (9/910) 3 4 6:11 425 to QC_PROBABLY_BAD because raw temperature spikes 13:40:02 26 Mar 2016 UTC: INFO: QC.py(408): Changed (3/910) 5 8 425 to QC_PROBABLY_BAD because raw conductivity spikes 13:40:02 26 Mar 2016 UTC: INFO: QC.py(180): Changed (9/910) 3 4 6:11 425 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:40:02 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/910) 5 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:40:02 26 Mar 2016 UTC: INFO: QC.py(365): Changed (9/910) 3 4 6:11 425 to QC_INTERPOLATED because temperature spikes 13:40:02 26 Mar 2016 UTC: INFO: QC.py(408): Changed (3/910) 5 8 425 to QC_INTERPOLATED because conductivity spikes 13:40:02 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/910) 448:453 to QC_BAD because slow apogee CT flow 13:40:02 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (15/910) 1:15 to QC_BAD because prior to dive start 13:40:02 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/910) 1:15 448:453 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:40:02 26 Mar 2016 UTC: INFO: QC.py(180): Changed (21/910) 1:15 448:453 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 13:40:03 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 2 stalled points 909 910 13:40:03 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:40:03 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 24 interp_salinity data_points in_between 619 629 % suspect thermal-inertia points 622 13:40:03 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/910) 425 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:40:03 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/910) 425 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:40:03 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.50 cm/s 13:40:03 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.61 cm/s 13:40:03 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:40:03 26 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/910) 368:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:40:03 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/910) 3 4 6:11 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:40:03 26 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (2/910) 909 910 to QC_BAD because slow flow in SBE43 13:40:03 26 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (127/910) 368:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 13:40:03 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/910) 3 4 6:11 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:40:03 26 Mar 2016 UTC: INFO: QC.py(180): Changed (21/910) 1:15 448:453 to QC_BAD because changed salinity implies changed optode oxygen 13:40:03 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:40:03 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 13:40:03 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 24: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.31% reduction 13:40:03 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.24 13:40:03 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:40:03 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:40:03 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:40:04 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 13:40:04 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 13:40:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 22 13:40:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 13:40:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 13:40:12 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:40:12 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:40:12 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:40:12 26 Mar 2016 UTC /home/sg146/p1460024.eng /home/sg146/p1460024.asc /home/sg146/p1460024.pro /home/sg146/p1460024.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 13:40:12 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:12 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:40:12 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:40:12 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 13:40:12 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 13:40:12 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:40:12 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:40:12 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:40:12 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 13:40:12 26 Mar 2016 UTC 17:35:18 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14772 17:35:18 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:39:10 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14879 17:39:10 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:39:10 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 17:39:10 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 17:39:10 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:39:10 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160326073909 ] 17:39:10 26 Mar 2016 UTC: INFO: Base.py(1333): PID:14886 17:39:10 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 17:39:10 26 Mar 2016 UTC 17:39:10 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 17:39:10 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 17:39:10 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 17:39:10 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 17:39:10 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:39:10 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:25 calls_made:1 call_cycle:0 2156.0850 -15705.9020 03/26/16 17:33:34 UTC) to sdrifter@soest.hawaii.edu 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:39:10 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:25 calls_made:1 call_cycle:0 17:39:10 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:39:10 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:39:10 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 17:39:11 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0025lz 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0025lz.1a.x00 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0025lz.1a.x01 17:39:11 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0025lz.r in process_file_group 17:39:11 26 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460025.log 17:39:11 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 17:39:11 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0025dz 17:39:11 26 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0025dz.x04 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.1a.x00 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.1a.x01 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.1a.x02 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0025dz.1a.x03 17:39:11 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0025dz.b.1a.x04 17:39:11 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0025dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [25] 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [25] 17:39:11 26 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460025) for profiles 17:39:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 17:39:11 26 Mar 2016 UTC: INFO: QC.py(365): Changed (5/910) 3 7:10 to QC_PROBABLY_BAD because raw temperature spikes 17:39:11 26 Mar 2016 UTC: INFO: QC.py(180): Changed (5/910) 3 7:10 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:39:11 26 Mar 2016 UTC: INFO: QC.py(365): Changed (5/910) 3 7:10 to QC_INTERPOLATED because temperature spikes 17:39:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/910) 461:466 to QC_BAD because slow apogee CT flow 17:39:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/910) 1:11 to QC_BAD because prior to dive start 17:39:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/910) 909 910 to QC_BAD because end of climb 17:39:11 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/910) 1:11 461:466 909 910 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:39:11 26 Mar 2016 UTC: INFO: QC.py(180): Changed (19/910) 1:11 461:466 909 910 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 17:39:12 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:39:12 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 25 interp_salinity data_points in_between 193 197 % suspect thermal-inertia points 195 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.86 cm/s 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:39:12 26 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (132/910) 375 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:39:12 26 Mar 2016 UTC: INFO: QC.py(180): Changed (5/910) 3 7:10 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:39:12 26 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (132/910) 375 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 17:39:12 26 Mar 2016 UTC: INFO: QC.py(180): Changed (5/910) 3 7:10 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:39:12 26 Mar 2016 UTC: INFO: QC.py(180): Changed (19/910) 1:11 461:466 909 910 to QC_BAD because changed salinity implies changed optode oxygen 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:39:12 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 25: Data set size for profile, binned and kkyy files reduced by 19 points, a 2.09% reduction 17:39:12 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.25 17:39:12 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:39:12 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:39:12 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 17:39:12 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 17:39:20 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 22 17:39:20 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 17:39:20 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 17:39:22 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:39:22 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:39:22 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:39:22 26 Mar 2016 UTC /home/sg146/p1460025.log /home/sg146/p1460025.eng /home/sg146/p1460025.asc /home/sg146/p1460025.pro /home/sg146/p1460025.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 17:39:22 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:39:22 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:39:22 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:39:22 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 17:39:22 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 17:39:22 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:39:22 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:39:22 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:39:22 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 17:39:22 26 Mar 2016 UTC 21:29:59 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 21390 21:29:59 26 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:33:37 26 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 21568 21:33:37 26 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:33:37 26 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 21:33:37 26 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 21:33:37 26 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:33:37 26 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160326113337 ] 21:33:37 26 Mar 2016 UTC: INFO: Base.py(1333): PID:21575 21:33:37 26 Mar 2016 UTC: INFO: Base.py(1375): Started processing 21:33:37 26 Mar 2016 UTC 21:33:37 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 21:33:37 26 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 21:33:37 26 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 21:33:37 26 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 21:33:37 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:33:37 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:26 calls_made:1 call_cycle:0 2155.6360 -15706.6150 03/26/16 21:27:59 UTC) to sdrifter@soest.hawaii.edu 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:33:37 26 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:26 calls_made:1 call_cycle:0 21:33:37 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:33:37 26 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 21:33:38 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0026lz 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0026lz.1a.x00 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0026lz.1a.x01 21:33:38 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0026lz.r in process_file_group 21:33:38 26 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460026.log 21:33:38 26 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 21:33:38 26 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0026dz 21:33:38 26 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0026dz.x04 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.1a.x00 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.1a.x01 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.1a.x02 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0026dz.1a.x03 21:33:38 26 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0026dz.b.1a.x04 21:33:38 26 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0026dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [26] 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [26] 21:33:38 26 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460026) for profiles 21:33:38 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 21:33:39 26 Mar 2016 UTC: INFO: QC.py(365): Changed (8/922) 2 5:7 9 10 338 921 to QC_PROBABLY_BAD because raw temperature spikes 21:33:39 26 Mar 2016 UTC: INFO: QC.py(408): Changed (1/922) 921 to QC_PROBABLY_BAD because raw conductivity spikes 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/922) 2 5:7 9 10 338 921 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:33:39 26 Mar 2016 UTC: INFO: QC.py(365): Changed (8/922) 2 5:7 9 10 338 921 to QC_INTERPOLATED because temperature spikes 21:33:39 26 Mar 2016 UTC: INFO: QC.py(408): Changed (1/922) 921 to QC_INTERPOLATED because conductivity spikes 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/922) 434:439 to QC_BAD because slow apogee CT flow 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/922) 1:11 to QC_BAD because prior to dive start 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/922) 921 922 to QC_BAD because end of climb 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/922) 1:11 434:439 921 922 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (19/922) 1:11 434:439 921 922 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 21:33:39 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:33:39 26 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 26 interp_salinity data_points in_between 204 208 % suspect thermal-inertia points 206 207 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/922) 338 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (1/922) 338 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.77 cm/s 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.40 cm/s 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:33:39 26 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (122/922) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/922) 2 5:7 9 10 338 921 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:33:39 26 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (122/922) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (8/922) 2 5:7 9 10 338 921 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:33:39 26 Mar 2016 UTC: INFO: QC.py(180): Changed (19/922) 1:11 434:439 921 922 to QC_BAD because changed salinity implies changed optode oxygen 21:33:39 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:33:39 26 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 21:33:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 26: Data set size for profile, binned and kkyy files reduced by 19 points, a 2.06% reduction 21:33:40 26 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.26 21:33:40 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:33:40 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:33:40 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:33:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 21:33:40 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 21:33:48 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 142, max_depth_dive_num = 22 21:33:48 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 21:33:48 26 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 21:33:50 26 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:33:50 26 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:33:50 26 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:33:50 26 Mar 2016 UTC /home/sg146/p1460026.log /home/sg146/p1460026.eng /home/sg146/p1460026.asc /home/sg146/p1460026.pro /home/sg146/p1460026.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 21:33:50 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:33:50 26 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:33:50 26 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:33:50 26 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 21:33:50 26 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 21:33:50 26 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:33:50 26 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:33:50 26 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:33:50 26 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 21:33:50 26 Mar 2016 UTC 02:33:24 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29483 02:33:24 27 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:37:46 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 29606 02:37:46 27 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:37:46 27 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:37:46 27 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:37:46 27 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:37:46 27 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160326163746 ] 02:37:46 27 Mar 2016 UTC: INFO: Base.py(1333): PID:29613 02:37:46 27 Mar 2016 UTC: INFO: Base.py(1375): Started processing 02:37:46 27 Mar 2016 UTC 02:37:46 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:37:46 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:37:46 27 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:37:47 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:37:47 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:27 calls_made:1 call_cycle:0 2154.8630 -15706.8940 03/27/16 02:31:29 UTC) to sdrifter@soest.hawaii.edu 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:37:47 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:27 calls_made:1 call_cycle:0 02:37:47 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:37:47 27 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:37:47 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0027lz 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027lz.1a.x00 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027lz.1a.x01 02:37:47 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0027lz.r in process_file_group 02:37:47 27 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460027.log 02:37:47 27 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 02:37:47 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0027dz 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.1a.x00 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.1a.x01 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.1a.x02 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.1a.x03 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.1a.x04 02:37:47 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0027dz.1a.x05 02:37:47 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0027dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 02:37:48 27 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [27] 02:37:48 27 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [27] 02:37:48 27 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460027) for profiles 02:37:48 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 02:37:48 27 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1019) 3:6 421 1017 to QC_PROBABLY_BAD because raw temperature spikes 02:37:48 27 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1019) 2:4 7 8 to QC_PROBABLY_BAD because raw conductivity spikes 02:37:48 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1019) 1019 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 02:37:48 27 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1019) 3:6 421 1017 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:37:48 27 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1019) 2 7 8 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:37:48 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1019) 1019 to QC_BAD because changed raw cond implies changed raw salinity 02:37:48 27 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1019) 3:6 421 1017 to QC_INTERPOLATED because temperature spikes 02:37:48 27 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1019) 2:4 7 8 to QC_INTERPOLATED because conductivity spikes 02:37:48 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1019) 1019 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 02:37:48 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1019) 513:518 to QC_BAD because slow apogee CT flow 02:37:48 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1019) 1:11 to QC_BAD because prior to dive start 02:37:48 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1019) 1:11 513:518 1019 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:37:48 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1019) 1:11 513:518 1019 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 02:37:49 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:37:49 27 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1019) 421 1017 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:37:49 27 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1019) 421 1017 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.25 cm/s 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.53 cm/s 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:37:49 27 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (205/1019) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:37:49 27 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1019) 3:6 421 1017 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:37:49 27 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/1019) 1018 to QC_BAD because slow flow in SBE43 02:37:49 27 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (205/1019) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 02:37:49 27 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1019) 3:6 421 1017 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:37:49 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1019) 1:11 513:518 1019 to QC_BAD because changed salinity implies changed optode oxygen 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:37:49 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 27: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.77% reduction 02:37:49 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.27 02:37:49 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:37:49 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:37:49 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 02:37:49 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 02:37:58 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 02:37:58 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 02:37:58 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 02:38:00 27 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:38:00 27 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:38:00 27 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:38:00 27 Mar 2016 UTC /home/sg146/p1460027.log /home/sg146/p1460027.eng /home/sg146/p1460027.asc /home/sg146/p1460027.pro /home/sg146/p1460027.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 02:38:00 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:38:00 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:38:00 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:38:00 27 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:38:00 27 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:38:00 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:38:00 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:38:00 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:38:00 27 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 02:38:00 27 Mar 2016 UTC 07:38:29 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 5638 07:38:29 27 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 07:42:44 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 5837 07:42:44 27 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:42:44 27 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 07:42:44 27 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 07:42:44 27 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:42:44 27 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160326214244 ] 07:42:44 27 Mar 2016 UTC: INFO: Base.py(1333): PID:5844 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1375): Started processing 07:42:45 27 Mar 2016 UTC 07:42:45 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 07:42:45 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 07:42:45 27 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 07:42:45 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:42:45 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:28 calls_made:1 call_cycle:0 2155.4720 -15706.4520 03/27/16 07:36:34 UTC) to sdrifter@soest.hawaii.edu 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:42:45 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:28 calls_made:1 call_cycle:0 07:42:45 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:42:45 27 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 07:42:45 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0028lz 07:42:45 27 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0028lz.x01 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0028lz.1a.x00 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0028lz.b.1a.x01 07:42:45 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0028lz.r in process_file_group 07:42:45 27 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460028.log 07:42:45 27 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 07:42:45 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0028dz 07:42:45 27 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0028dz.x05 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.1a.x00 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.1a.x01 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.1a.x02 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.1a.x03 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0028dz.1a.x04 07:42:45 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0028dz.b.1a.x05 07:42:45 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0028dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 07:42:46 27 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [28] 07:42:46 27 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [28] 07:42:46 27 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460028) for profiles 07:42:46 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 07:42:46 27 Mar 2016 UTC: INFO: QC.py(365): Changed (3/1037) 4 5 8 to QC_PROBABLY_BAD because raw temperature spikes 07:42:46 27 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1037) 1037 to QC_BAD because raw salinity below bound 07:42:46 27 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1037) 1037 to QC_BAD because bad raw salinity indicates raw conductivity issues 07:42:46 27 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1037) 3 4 to QC_PROBABLY_BAD because raw conductivity spikes 07:42:46 27 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1037) 4 5 8 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:42:46 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1037) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 07:42:46 27 Mar 2016 UTC: INFO: QC.py(365): Changed (3/1037) 4 5 8 to QC_INTERPOLATED because temperature spikes 07:42:46 27 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1037) 1037 to QC_BAD because salinity below bound 07:42:46 27 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1037) 1037 to QC_BAD because bad salinity indicates conductivity issues 07:42:46 27 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1037) 3 4 to QC_INTERPOLATED because conductivity spikes 07:42:46 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1037) 505:510 to QC_BAD because slow apogee CT flow 07:42:46 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1037) 1:11 to QC_BAD because prior to dive start 07:42:46 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1037) 1:11 505:510 1037 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:42:46 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1037) 1:11 505:510 1037 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 07:42:47 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.69 cm/s 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.32 cm/s 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:42:47 27 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (204/1037) 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:42:47 27 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1037) 4 5 8 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:42:47 27 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/1037) 1036 to QC_BAD because slow flow in SBE43 07:42:47 27 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (204/1037) 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 07:42:47 27 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1037) 4 5 8 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:42:47 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1037) 1:11 505:510 1037 to QC_BAD because changed salinity implies changed optode oxygen 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:42:47 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 28: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.74% reduction 07:42:47 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.28 07:42:47 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.28 07:42:47 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:42:47 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:42:47 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 07:42:47 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 07:42:57 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 07:42:57 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 07:42:57 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 07:42:59 27 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:42:59 27 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:42:59 27 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:42:59 27 Mar 2016 UTC /home/sg146/p1460028.log /home/sg146/p1460028.eng /home/sg146/p1460028.asc /home/sg146/p1460028.pro /home/sg146/p1460028.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 07:42:59 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:42:59 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:42:59 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:42:59 27 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 07:42:59 27 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 07:42:59 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:42:59 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:42:59 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:42:59 27 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 07:42:59 27 Mar 2016 UTC 12:50:56 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14296 12:50:56 27 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 12:56:53 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14445 12:56:53 27 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:56:53 27 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 12:56:53 27 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 12:56:53 27 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:56:53 27 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160327025653 ] 12:56:53 27 Mar 2016 UTC: INFO: Base.py(1333): PID:14452 12:56:54 27 Mar 2016 UTC: INFO: Base.py(1375): Started processing 12:56:54 27 Mar 2016 UTC 12:56:54 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 12:56:54 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 12:56:54 27 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 12:56:54 27 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 12:56:54 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:56:54 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:56:54 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:54 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:56:54 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:54 27 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:29 calls_made:1 call_cycle:0 2155.5050 -15705.8150 03/27/16 12:49:05 UTC) to sdrifter@soest.hawaii.edu 12:56:59 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:56:59 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:56:59 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:56:59 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:59 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:56:59 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:29 calls_made:1 call_cycle:0 12:56:59 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:56:59 27 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 12:56:59 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0029lz 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029lz.1a.x00 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029lz.1a.x01 12:56:59 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0029lz.r in process_file_group 12:56:59 27 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460029.log 12:56:59 27 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 12:56:59 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0029dz 12:56:59 27 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0029dz.x05 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.1a.x00 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.1a.x01 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.1a.x02 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.1a.x03 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0029dz.1a.x04 12:56:59 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0029dz.b.1a.x05 12:56:59 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0029dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 12:57:00 27 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [29] 12:57:00 27 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [29] 12:57:00 27 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460029) for profiles 12:57:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 12:57:00 27 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1023) 3 5 6 8 9 573 to QC_PROBABLY_BAD because raw temperature spikes 12:57:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1023) 1023 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 12:57:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1023) 3 5 6 8 9 573 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:57:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1023) 1023 to QC_BAD because changed raw cond implies changed raw salinity 12:57:00 27 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1023) 3 5 6 8 9 573 to QC_INTERPOLATED because temperature spikes 12:57:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1023) 1023 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 12:57:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1023) 495:500 to QC_BAD because slow apogee CT flow 12:57:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1023) 1:11 to QC_BAD because prior to dive start 12:57:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1023) 1:11 495:500 1023 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:57:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1023) 1:11 495:500 1023 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 12:57:01 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:57:01 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 29 interp_salinity data_points in_between 709 716 % suspect thermal-inertia points 712 12:57:01 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1023) 573 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:57:01 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1023) 573 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.65 cm/s 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:57:01 27 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (219/1023) 347:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:57:01 27 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1023) 3 5 6 8 9 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:57:01 27 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (219/1023) 347:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 12:57:01 27 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1023) 3 5 6 8 9 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:57:01 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1023) 1:11 495:500 1023 to QC_BAD because changed salinity implies changed optode oxygen 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:57:01 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 29: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.76% reduction 12:57:01 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.29 12:57:01 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.29 12:57:01 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:57:01 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:57:01 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 12:57:01 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 12:57:11 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 12:57:11 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 12:57:11 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 12:57:13 27 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:57:13 27 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:57:13 27 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:57:13 27 Mar 2016 UTC /home/sg146/p1460029.log /home/sg146/p1460029.eng /home/sg146/p1460029.asc /home/sg146/p1460029.pro /home/sg146/p1460029.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 12:57:13 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:57:13 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:57:13 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:57:13 27 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 12:57:13 27 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 12:57:13 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:57:13 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:57:13 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:57:13 27 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 12:57:13 27 Mar 2016 UTC 17:53:58 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22392 17:53:58 27 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 17:58:26 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22512 17:58:26 27 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:58:26 27 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 17:58:26 27 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 17:58:26 27 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:58:26 27 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160327075825 ] 17:58:26 27 Mar 2016 UTC: INFO: Base.py(1333): PID:22519 17:58:26 27 Mar 2016 UTC: INFO: Base.py(1375): Started processing 17:58:26 27 Mar 2016 UTC 17:58:26 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 17:58:26 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 17:58:26 27 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 17:58:26 27 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 17:58:26 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:58:26 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:30 calls_made:1 call_cycle:0 2155.2760 -15705.6810 03/27/16 17:52:05 UTC) to sdrifter@soest.hawaii.edu 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:58:26 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:30 calls_made:1 call_cycle:0 17:58:26 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:58:26 27 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 17:58:27 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0030lz 17:58:27 27 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0030lz.x01 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030lz.1a.x00 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0030lz.b.1a.x01 17:58:27 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0030lz.r in process_file_group 17:58:27 27 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460030.log 17:58:27 27 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 17:58:27 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0030dz 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.1a.x00 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.1a.x01 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.1a.x02 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.1a.x03 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.1a.x04 17:58:27 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0030dz.1a.x05 17:58:27 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0030dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [30] 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [30] 17:58:27 27 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460030) for profiles 17:58:27 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 17:58:27 27 Mar 2016 UTC: INFO: QC.py(365): Changed (10/980) 2 3 8:10 544 545 567 574 644 to QC_PROBABLY_BAD because raw temperature spikes 17:58:27 27 Mar 2016 UTC: INFO: QC.py(377): Changed (1/980) 980 to QC_BAD because raw salinity below bound 17:58:27 27 Mar 2016 UTC: INFO: QC.py(388): Changed (1/980) 980 to QC_BAD because bad raw salinity indicates raw conductivity issues 17:58:27 27 Mar 2016 UTC: INFO: QC.py(408): Changed (4/980) 544 545 567 574 to QC_PROBABLY_BAD because raw conductivity spikes 17:58:27 27 Mar 2016 UTC: INFO: QC.py(180): Changed (10/980) 2 3 8:10 544 545 567 574 644 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:58:27 27 Mar 2016 UTC: INFO: QC.py(365): Changed (10/980) 2 3 8:10 544 545 567 574 644 to QC_INTERPOLATED because temperature spikes 17:58:27 27 Mar 2016 UTC: INFO: QC.py(377): Changed (1/980) 980 to QC_BAD because salinity below bound 17:58:27 27 Mar 2016 UTC: INFO: QC.py(388): Changed (1/980) 980 to QC_BAD because bad salinity indicates conductivity issues 17:58:27 27 Mar 2016 UTC: INFO: QC.py(408): Changed (4/980) 544 545 567 574 to QC_INTERPOLATED because conductivity spikes 17:58:27 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/980) 497:502 to QC_BAD because slow apogee CT flow 17:58:27 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/980) 1:11 to QC_BAD because prior to dive start 17:58:27 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/980) 1:11 497:502 980 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:58:27 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/980) 1:11 497:502 980 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 17:58:28 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:58:28 27 Mar 2016 UTC: INFO: QC.py(180): Changed (5/980) 544 545 567 574 644 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:58:28 27 Mar 2016 UTC: INFO: QC.py(180): Changed (5/980) 544 545 567 574 644 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:58:28 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.92 cm/s 17:58:28 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.60 cm/s 17:58:28 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:58:28 27 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (212/980) 352:355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:58:28 27 Mar 2016 UTC: INFO: QC.py(180): Changed (6/980) 2 3 8:10 644 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:58:28 27 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (212/980) 352:355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 17:58:28 27 Mar 2016 UTC: INFO: QC.py(180): Changed (6/980) 2 3 8:10 644 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:58:28 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/980) 1:11 497:502 980 to QC_BAD because changed salinity implies changed optode oxygen 17:58:28 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:58:28 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 17:58:29 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 30: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.84% reduction 17:58:29 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.30 17:58:29 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.30 17:58:29 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:58:29 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:58:29 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:58:29 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 17:58:29 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 17:58:39 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 17:58:39 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 17:58:39 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 17:58:41 27 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:58:41 27 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:58:41 27 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:58:41 27 Mar 2016 UTC /home/sg146/p1460030.log /home/sg146/p1460030.eng /home/sg146/p1460030.asc /home/sg146/p1460030.pro /home/sg146/p1460030.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 17:58:41 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:58:41 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:58:41 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:58:41 27 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 17:58:41 27 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 17:58:41 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:58:41 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:58:41 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:58:41 27 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 17:58:41 27 Mar 2016 UTC 23:02:24 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30462 23:02:24 27 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 23:06:57 27 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30583 23:06:57 27 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:06:57 27 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:06:57 27 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:06:57 27 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:06:57 27 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160327130657 ] 23:06:57 27 Mar 2016 UTC: INFO: Base.py(1333): PID:30590 23:06:57 27 Mar 2016 UTC: INFO: Base.py(1375): Started processing 23:06:57 27 Mar 2016 UTC 23:06:57 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:06:57 27 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:06:58 27 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:06:58 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:06:58 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:31 calls_made:1 call_cycle:0 2155.2080 -15705.6690 03/27/16 23:00:28 UTC) to sdrifter@soest.hawaii.edu 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:06:58 27 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:31 calls_made:1 call_cycle:0 23:06:58 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:06:58 27 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:06:58 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0031lz 23:06:58 27 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0031lz.x01 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0031lz.1a.x00 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0031lz.b.1a.x01 23:06:58 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0031lz.r in process_file_group 23:06:58 27 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460031.log 23:06:58 27 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 23:06:58 27 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0031dz 23:06:58 27 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0031dz.x05 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.1a.x00 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.1a.x01 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.1a.x02 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.1a.x03 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0031dz.1a.x04 23:06:58 27 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0031dz.b.1a.x05 23:06:58 27 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0031dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 23:06:59 27 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [31] 23:06:59 27 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [31] 23:06:59 27 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460031) for profiles 23:06:59 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 23:06:59 27 Mar 2016 UTC: INFO: QC.py(365): Changed (13/1014) 2:5 8 412 414 506 548 551 555 556 1012 to QC_PROBABLY_BAD because raw temperature spikes 23:06:59 27 Mar 2016 UTC: INFO: QC.py(408): Changed (6/1014) 414 548 555 556 1012 1013 to QC_PROBABLY_BAD because raw conductivity spikes 23:06:59 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1014) 1014 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 23:06:59 27 Mar 2016 UTC: INFO: QC.py(180): Changed (13/1014) 2:5 8 412 414 506 548 551 555 556 1012 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:06:59 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1014) 1013 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:06:59 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1014) 1014 to QC_BAD because changed raw cond implies changed raw salinity 23:06:59 27 Mar 2016 UTC: INFO: QC.py(365): Changed (13/1014) 2:5 8 412 414 506 548 551 555 556 1012 to QC_INTERPOLATED because temperature spikes 23:06:59 27 Mar 2016 UTC: INFO: QC.py(408): Changed (6/1014) 414 548 555 556 1012 1013 to QC_INTERPOLATED because conductivity spikes 23:06:59 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1014) 1014 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 23:06:59 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1014) 504:509 to QC_BAD because slow apogee CT flow 23:06:59 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1014) 1:11 to QC_BAD because prior to dive start 23:06:59 27 Mar 2016 UTC: INFO: QC.py(488): Changed (2/1014) 1012 1013 to QC_PROBABLY_BAD because bad interpolation anchors 23:06:59 27 Mar 2016 UTC: INFO: QC.py(489): SUGGESTION: 31 bad_conductivity data_points in_between 1010 1013 % bad interpolation anchors 23:06:59 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1014) 1:11 504:509 1014 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:06:59 27 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1014) 1:11 504:509 1014 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 23:06:59 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 1013 23:07:00 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:07:00 27 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 31 interp_salinity data_points in_between 1009 1011 % suspect thermal-inertia points 1011 23:07:00 27 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1014) 1013 to QC_BAD because salinity below bound 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1014) 412 414 548 551 555 556 1012 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1014) 1012 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1014) 412 414 548 551 555 556 1012 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.03 cm/s 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:07:00 27 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (215/1014) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (9/1014) 2:5 8 506 551 556 1012 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:07:00 27 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/1014) 1013 to QC_BAD because slow flow in SBE43 23:07:00 27 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (215/1014) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (9/1014) 2:5 8 506 551 556 1012 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1014) 1012 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 23:07:00 27 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1014) 1:11 504:509 1013 1014 to QC_BAD because changed salinity implies changed optode oxygen 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:07:00 27 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 31: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.87% reduction 23:07:00 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.31 23:07:00 27 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.31 23:07:00 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:07:00 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:07:00 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 23:07:00 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 23:07:11 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 23:07:12 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 23:07:12 27 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 23:07:14 27 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:07:14 27 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:07:14 27 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:07:14 27 Mar 2016 UTC /home/sg146/p1460031.log /home/sg146/p1460031.eng /home/sg146/p1460031.asc /home/sg146/p1460031.pro /home/sg146/p1460031.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 23:07:14 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:07:14 27 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:07:14 27 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:07:14 27 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:07:14 27 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:07:14 27 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:07:14 27 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:07:14 27 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:07:14 27 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 23:07:14 27 Mar 2016 UTC 04:08:58 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 6253 04:08:58 28 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 04:14:21 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 6443 04:14:21 28 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:14:21 28 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:14:21 28 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:14:21 28 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:14:21 28 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160327181420 ] 04:14:21 28 Mar 2016 UTC: INFO: Base.py(1333): PID:6450 04:14:21 28 Mar 2016 UTC: INFO: Base.py(1375): Started processing 04:14:21 28 Mar 2016 UTC 04:14:21 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:14:21 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:14:21 28 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:14:21 28 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:14:21 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:14:21 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:14:21 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:21 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:14:21 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:21 28 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:32 calls_made:1 call_cycle:0 2155.6080 -15704.9390 03/28/16 04:07:05 UTC) to sdrifter@soest.hawaii.edu 04:14:26 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:26 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:14:26 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:26 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:14:26 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:26 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:14:26 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:26 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:14:26 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:32 calls_made:1 call_cycle:0 04:14:26 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:14:26 28 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:14:27 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0032lz 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032lz.1a.x00 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032lz.1a.x01 04:14:27 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0032lz.r in process_file_group 04:14:27 28 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460032.log 04:14:27 28 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:14:27 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0032dz 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.1a.x00 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.1a.x01 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.1a.x02 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.1a.x03 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.1a.x04 04:14:27 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0032dz.1a.x05 04:14:27 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0032dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:14:27 28 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [32] 04:14:27 28 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [32] 04:14:27 28 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460032) for profiles 04:14:27 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:14:27 28 Mar 2016 UTC: INFO: QC.py(365): Changed (7/1022) 4 5 9 10 411 563 1021 to QC_PROBABLY_BAD because raw temperature spikes 04:14:27 28 Mar 2016 UTC: INFO: QC.py(408): Changed (4/1022) 2 409 411 1021 to QC_PROBABLY_BAD because raw conductivity spikes 04:14:27 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1022) 1022 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 04:14:27 28 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1022) 4 5 9 10 411 563 1021 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:14:27 28 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1022) 2 409 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:14:27 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1022) 1022 to QC_BAD because changed raw cond implies changed raw salinity 04:14:27 28 Mar 2016 UTC: INFO: QC.py(365): Changed (7/1022) 4 5 9 10 411 563 1021 to QC_INTERPOLATED because temperature spikes 04:14:27 28 Mar 2016 UTC: INFO: QC.py(408): Changed (4/1022) 2 409 411 1021 to QC_INTERPOLATED because conductivity spikes 04:14:27 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1022) 1022 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 04:14:27 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1022) 491:496 to QC_BAD because slow apogee CT flow 04:14:27 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1022) 1:11 to QC_BAD because prior to dive start 04:14:27 28 Mar 2016 UTC: INFO: QC.py(488): Changed (1/1022) 1021 to QC_PROBABLY_BAD because bad interpolation anchors 04:14:27 28 Mar 2016 UTC: INFO: QC.py(489): SUGGESTION: 32 bad_conductivity data_points in_between 1019 1021 % bad interpolation anchors 04:14:27 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1022) 1:11 491:496 1022 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:14:27 28 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1022) 1:11 491:496 1022 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:14:28 28 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1022) 411 563 1021 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1022) 1021 to QC_PROBABLY_BAD because changed corrected cond implies changed corrected salinity 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1022) 409 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1022) 411 563 1021 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.33 cm/s 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.33 cm/s 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:14:28 28 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (210/1022) 354 355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1022) 4 5 9 10 411 1021 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:14:28 28 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (210/1022) 354 355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1022) 4 5 9 10 411 1021 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1022) 1021 to QC_PROBABLY_BAD because changed salinity implies changed optode oxygen 04:14:28 28 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1022) 1:11 491:496 1022 to QC_BAD because changed salinity implies changed optode oxygen 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:14:28 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 32: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.76% reduction 04:14:28 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.32 04:14:28 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.32 04:14:28 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:14:28 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:14:28 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:14:28 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:14:40 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 04:14:40 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:14:40 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:14:42 28 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:14:42 28 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:14:42 28 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:14:42 28 Mar 2016 UTC /home/sg146/p1460032.log /home/sg146/p1460032.eng /home/sg146/p1460032.asc /home/sg146/p1460032.pro /home/sg146/p1460032.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:14:42 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:14:42 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:14:42 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:14:42 28 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:14:42 28 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:14:42 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:14:42 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:14:42 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:14:42 28 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 04:14:42 28 Mar 2016 UTC 09:05:23 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14430 09:05:23 28 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 09:10:01 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14553 09:10:01 28 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:10:01 28 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 09:10:01 28 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 09:10:01 28 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:10:01 28 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160327231000 ] 09:10:01 28 Mar 2016 UTC: INFO: Base.py(1333): PID:14560 09:10:01 28 Mar 2016 UTC: INFO: Base.py(1375): Started processing 09:10:01 28 Mar 2016 UTC 09:10:01 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 09:10:01 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 09:10:01 28 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 09:10:01 28 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 09:10:01 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:10:01 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:33 calls_made:1 call_cycle:0 2155.9340 -15704.6050 03/28/16 09:03:35 UTC) to sdrifter@soest.hawaii.edu 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:10:01 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:33 calls_made:1 call_cycle:0 09:10:01 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:10:01 28 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:10:01 28 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 09:10:02 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0033lz 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033lz.1a.x00 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033lz.1a.x01 09:10:02 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0033lz.r in process_file_group 09:10:02 28 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460033.log 09:10:02 28 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 09:10:02 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0033dz 09:10:02 28 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0033dz.x05 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.1a.x00 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.1a.x01 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.1a.x02 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.1a.x03 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0033dz.1a.x04 09:10:02 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0033dz.b.1a.x05 09:10:02 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0033dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [33] 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [33] 09:10:02 28 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460033) for profiles 09:10:02 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 09:10:02 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2567): Changed (1/992) 992 to QC_BAD because conductivity exceeds frequency bounds 09:10:02 28 Mar 2016 UTC: INFO: QC.py(365): Changed (10/992) 2 3 7:9 424 425 538 555 556 to QC_PROBABLY_BAD because raw temperature spikes 09:10:02 28 Mar 2016 UTC: INFO: QC.py(377): Changed (2/992) 991 992 to QC_BAD because raw salinity below bound 09:10:02 28 Mar 2016 UTC: INFO: QC.py(388): Changed (1/992) 991 to QC_BAD because bad raw salinity indicates raw conductivity issues 09:10:02 28 Mar 2016 UTC: INFO: QC.py(408): Changed (5/992) 8 538 555 556 564 to QC_PROBABLY_BAD because raw conductivity spikes 09:10:02 28 Mar 2016 UTC: INFO: QC.py(180): Changed (10/992) 2 3 7:9 424 425 538 555 556 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:10:02 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/992) 564 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:10:02 28 Mar 2016 UTC: INFO: QC.py(365): Changed (10/992) 2 3 7:9 424 425 538 555 556 to QC_INTERPOLATED because temperature spikes 09:10:02 28 Mar 2016 UTC: INFO: QC.py(377): Changed (2/992) 991 992 to QC_BAD because salinity below bound 09:10:02 28 Mar 2016 UTC: INFO: QC.py(388): Changed (1/992) 991 to QC_BAD because bad salinity indicates conductivity issues 09:10:02 28 Mar 2016 UTC: INFO: QC.py(408): Changed (5/992) 8 538 555 556 564 to QC_INTERPOLATED because conductivity spikes 09:10:02 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/992) 484:489 to QC_BAD because slow apogee CT flow 09:10:02 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/992) 1:11 to QC_BAD because prior to dive start 09:10:02 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/992) 1:11 484:489 991 992 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:10:02 28 Mar 2016 UTC: INFO: QC.py(180): Changed (19/992) 1:11 484:489 991 992 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 09:10:03 28 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:10:03 28 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 33 interp_salinity data_points in_between 217 227 % suspect thermal-inertia points 220 09:10:03 28 Mar 2016 UTC: INFO: QC.py(180): Changed (5/992) 424 425 538 555 556 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:10:03 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/992) 564 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:10:03 28 Mar 2016 UTC: INFO: QC.py(180): Changed (5/992) 424 425 538 555 556 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.84 cm/s 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.20 cm/s 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:10:03 28 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (201/992) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:10:03 28 Mar 2016 UTC: INFO: QC.py(180): Changed (6/992) 2 3 7:9 556 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:10:03 28 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (201/992) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 09:10:03 28 Mar 2016 UTC: INFO: QC.py(180): Changed (6/992) 2 3 7:9 556 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:10:03 28 Mar 2016 UTC: INFO: QC.py(180): Changed (19/992) 1:11 484:489 991 992 to QC_BAD because changed salinity implies changed optode oxygen 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:10:03 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 33: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.92% reduction 09:10:03 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.33 09:10:03 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.33 09:10:03 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:10:03 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:10:03 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 09:10:03 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 09:10:16 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 09:10:16 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 09:10:16 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 09:10:18 28 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:10:18 28 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:10:18 28 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:10:18 28 Mar 2016 UTC /home/sg146/p1460033.log /home/sg146/p1460033.eng /home/sg146/p1460033.asc /home/sg146/p1460033.pro /home/sg146/p1460033.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 09:10:18 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:10:18 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:10:18 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:10:18 28 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 09:10:18 28 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 09:10:18 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:10:18 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:10:18 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:10:18 28 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 09:10:18 28 Mar 2016 UTC 14:12:05 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22693 14:12:06 28 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 14:16:35 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 22782 14:16:35 28 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:16:35 28 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:16:35 28 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:16:35 28 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:16:35 28 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160328041634 ] 14:16:35 28 Mar 2016 UTC: INFO: Base.py(1333): PID:22789 14:16:35 28 Mar 2016 UTC: INFO: Base.py(1375): Started processing 14:16:35 28 Mar 2016 UTC 14:16:35 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:16:35 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:16:35 28 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:16:35 28 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:16:35 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:16:35 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:34 calls_made:1 call_cycle:0 2156.2610 -15704.0600 03/28/16 14:10:04 UTC) to sdrifter@soest.hawaii.edu 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:16:35 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:34 calls_made:1 call_cycle:0 14:16:35 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:16:35 28 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:16:36 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0034lz 14:16:36 28 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0034lz.x01 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0034lz.1a.x00 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0034lz.b.1a.x01 14:16:36 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0034lz.r in process_file_group 14:16:36 28 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460034.log 14:16:36 28 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:16:36 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0034dz 14:16:36 28 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0034dz.x05 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.1a.x00 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.1a.x01 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.1a.x02 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.1a.x03 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0034dz.1a.x04 14:16:36 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0034dz.b.1a.x05 14:16:36 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0034dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [34] 14:16:36 28 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [34] 14:16:37 28 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460034) for profiles 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 14:16:37 28 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1010) 2 3 6 8 414 1009 to QC_PROBABLY_BAD because raw temperature spikes 14:16:37 28 Mar 2016 UTC: INFO: QC.py(377): Changed (2/1010) 1009 1010 to QC_BAD because raw salinity below bound 14:16:37 28 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1010) 1010 to QC_BAD because bad raw salinity indicates raw conductivity issues 14:16:37 28 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1010) 414 502 to QC_PROBABLY_BAD because raw conductivity spikes 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1010) 2 3 6 8 414 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1010) 502 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:16:37 28 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1010) 2 3 6 8 414 1009 to QC_INTERPOLATED because temperature spikes 14:16:37 28 Mar 2016 UTC: INFO: QC.py(377): Changed (2/1010) 1009 1010 to QC_BAD because salinity below bound 14:16:37 28 Mar 2016 UTC: INFO: QC.py(388): Changed (2/1010) 1009 1010 to QC_BAD because bad salinity indicates conductivity issues 14:16:37 28 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1010) 414 502 to QC_INTERPOLATED because conductivity spikes 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1010) 500:505 to QC_BAD because slow apogee CT flow 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1010) 1:11 to QC_BAD because prior to dive start 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1010) 1:11 500:505 1009 1010 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1010) 1:11 500:505 1009 1010 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 14:16:37 28 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:16:37 28 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 34 interp_salinity data_points in_between 222 231 % suspect thermal-inertia points 227 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1010) 414 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1010) 414 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.32 cm/s 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:16:37 28 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (212/1010) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1010) 2 3 6 8 1009 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:16:37 28 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (212/1010) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1010) 2 3 6 8 1009 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:16:37 28 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1010) 1:11 500:505 1009 1010 to QC_BAD because changed salinity implies changed optode oxygen 14:16:37 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:16:37 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 14:16:38 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 34: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.88% reduction 14:16:38 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.34 14:16:38 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.34 14:16:38 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:16:38 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:16:38 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:16:38 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 14:16:38 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 14:16:51 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 14:16:51 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 14:16:51 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 14:16:53 28 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:16:53 28 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:16:53 28 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:16:53 28 Mar 2016 UTC /home/sg146/p1460034.log /home/sg146/p1460034.eng /home/sg146/p1460034.asc /home/sg146/p1460034.pro /home/sg146/p1460034.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 14:16:53 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:16:53 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:16:53 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:16:53 28 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:16:53 28 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:16:53 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:16:53 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:16:53 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:16:53 28 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 14:16:53 28 Mar 2016 UTC 19:19:48 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30781 19:19:48 28 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 19:24:54 28 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 30982 19:24:54 28 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:24:54 28 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 19:24:54 28 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 19:24:54 28 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:24:54 28 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160328092454 ] 19:24:54 28 Mar 2016 UTC: INFO: Base.py(1333): PID:30989 19:24:54 28 Mar 2016 UTC: INFO: Base.py(1375): Started processing 19:24:54 28 Mar 2016 UTC 19:24:54 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 19:24:54 28 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 19:24:54 28 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 19:24:54 28 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 19:24:54 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:24:54 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:24:54 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:54 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:24:54 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:54 28 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:35 calls_made:1 call_cycle:0 2156.1270 -15704.3320 03/28/16 19:17:58 UTC) to sdrifter@soest.hawaii.edu 19:24:55 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:55 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:24:55 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:55 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:24:55 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:55 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:24:55 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:55 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:24:55 28 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:35 calls_made:1 call_cycle:0 19:24:55 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:24:55 28 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 19:24:55 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0035lz 19:24:55 28 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0035lz.x01 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035lz.1a.x00 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0035lz.b.1a.x01 19:24:55 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0035lz.r in process_file_group 19:24:55 28 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460035.log 19:24:55 28 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 19:24:55 28 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0035dz 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.1a.x00 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.1a.x01 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.1a.x02 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.1a.x03 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.1a.x04 19:24:55 28 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0035dz.1a.x05 19:24:55 28 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0035dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 19:24:56 28 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [35] 19:24:56 28 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [35] 19:24:56 28 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460035) for profiles 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 19:24:56 28 Mar 2016 UTC: INFO: QC.py(365): Changed (11/1031) 2:7 373 512 588 632 1030 to QC_PROBABLY_BAD because raw temperature spikes 19:24:56 28 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1031) 1030 to QC_BAD because raw salinity below bound 19:24:56 28 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1031) 2 3 419 420 1030 to QC_PROBABLY_BAD because raw conductivity spikes 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1031) 1031 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 19:24:56 28 Mar 2016 UTC: INFO: QC.py(180): Changed (10/1031) 2:7 373 512 588 632 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:24:56 28 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1031) 419 420 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:24:56 28 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1031) 1031 to QC_BAD because changed raw cond implies changed raw salinity 19:24:56 28 Mar 2016 UTC: INFO: QC.py(365): Changed (11/1031) 2:7 373 512 588 632 1030 to QC_INTERPOLATED because temperature spikes 19:24:56 28 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1031) 1030 to QC_BAD because salinity below bound 19:24:56 28 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1031) 1030 to QC_BAD because bad salinity indicates conductivity issues 19:24:56 28 Mar 2016 UTC: INFO: QC.py(408): Changed (4/1031) 2 3 419 420 to QC_INTERPOLATED because conductivity spikes 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1031) 1031 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1031) 511:516 to QC_BAD because slow apogee CT flow 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1031) 1:11 to QC_BAD because prior to dive start 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1031) 1029 to QC_BAD because end of climb 19:24:56 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1031) 1:11 511:516 1029:1031 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:24:56 28 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1031) 1:11 511:516 1029:1031 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 19:24:57 28 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:24:57 28 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1031) 373 588 632 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:24:57 28 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1031) 419 420 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:24:57 28 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1031) 373 588 632 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.06 cm/s 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.37 cm/s 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:24:57 28 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (211/1031) 368:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:24:57 28 Mar 2016 UTC: INFO: QC.py(180): Changed (8/1031) 2:7 632 1030 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:24:57 28 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (211/1031) 368:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 19:24:57 28 Mar 2016 UTC: INFO: QC.py(180): Changed (8/1031) 2:7 632 1030 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:24:57 28 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1031) 1:11 511:516 1029:1031 to QC_BAD because changed salinity implies changed optode oxygen 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:24:57 28 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 35: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.94% reduction 19:24:57 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.35 19:24:57 28 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.35 19:24:57 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:24:57 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:24:57 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 19:24:57 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 19:25:10 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 19:25:11 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 19:25:11 28 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 19:25:13 28 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:25:13 28 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:25:13 28 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:25:13 28 Mar 2016 UTC /home/sg146/p1460035.log /home/sg146/p1460035.eng /home/sg146/p1460035.asc /home/sg146/p1460035.pro /home/sg146/p1460035.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 19:25:13 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:25:13 28 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:25:13 28 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:25:13 28 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 19:25:13 28 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 19:25:13 28 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:25:13 28 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:25:13 28 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:25:13 28 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 19:25:13 28 Mar 2016 UTC 05:40:38 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14704 05:40:38 29 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 05:49:38 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 14985 05:49:38 29 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:49:38 29 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 05:49:38 29 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 05:49:38 29 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:49:38 29 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160328194937 ] 05:49:38 29 Mar 2016 UTC: INFO: Base.py(1333): PID:14992 05:49:38 29 Mar 2016 UTC: INFO: Base.py(1375): Started processing 05:49:38 29 Mar 2016 UTC 05:49:38 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 05:49:38 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 05:49:38 29 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 05:49:38 29 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 05:49:38 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:49:38 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:37 calls_made:4 call_cycle:0 2157.3450 -15703.1960 03/29/16 05:30:34 UTC) to sdrifter@soest.hawaii.edu 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:49:38 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:37 calls_made:4 call_cycle:0 05:49:38 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:49:38 29 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:49:39 29 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:49:39 29 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:49:39 29 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 05:49:39 29 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:49:39 29 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:49:39 29 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 05:49:39 29 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 05:49:39 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0036lz 05:49:39 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0036lz.x01 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0036lz.1a.x00 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0036lz.b.1a.x01 05:49:39 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0036lz.r in process_file_group 05:49:39 29 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460036.log 05:49:39 29 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 05:49:39 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0036dz 05:49:39 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0036dz.x05 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.1a.x00 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.1a.x01 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.1a.x02 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.1a.x03 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0036dz.1a.x04 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0036dz.b.1a.x05 05:49:39 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0036dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 05:49:39 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0037lz 05:49:39 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0037lz.x01 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037lz.1a.x00 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0037lz.b.1a.x01 05:49:39 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0037lz.r in process_file_group 05:49:39 29 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460037.log 05:49:39 29 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 05:49:39 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0037dz 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.1a.x00 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.1a.x01 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.1a.x02 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.1a.x03 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.1a.x04 05:49:39 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0037dz.1a.x05 05:49:39 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0037dz.r in process_file_group 05:49:40 29 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [36, 37] 05:49:40 29 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [36, 37] 05:49:40 29 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460036) for profiles 05:49:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 05:49:40 29 Mar 2016 UTC: INFO: QC.py(365): Changed (1/1008) 4 to QC_PROBABLY_BAD because raw temperature spikes 05:49:40 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1008) 4 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:49:40 29 Mar 2016 UTC: INFO: QC.py(365): Changed (1/1008) 4 to QC_INTERPOLATED because temperature spikes 05:49:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1008) 494:499 to QC_BAD because slow apogee CT flow 05:49:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1008) 1:11 to QC_BAD because prior to dive start 05:49:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1008) 1007 1008 to QC_BAD because end of climb 05:49:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1008) 1:11 494:499 1007 1008 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:49:40 29 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1008) 1:11 494:499 1007 1008 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 05:49:41 29 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.80 cm/s 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:49:41 29 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (201/1008) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:49:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1008) 4 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:49:41 29 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (201/1008) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 05:49:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1008) 4 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:49:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1008) 1:11 494:499 1007 1008 to QC_BAD because changed salinity implies changed optode oxygen 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:49:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 36: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.88% reduction 05:49:41 29 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460037) for profiles 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 05:49:41 29 Mar 2016 UTC: INFO: QC.py(365): Changed (5/1027) 2:4 7 441 to QC_PROBABLY_BAD because raw temperature spikes 05:49:41 29 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1027) 1027 to QC_BAD because raw salinity below bound 05:49:41 29 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1027) 1027 to QC_BAD because bad raw salinity indicates raw conductivity issues 05:49:41 29 Mar 2016 UTC: INFO: QC.py(408): Changed (3/1027) 2 441 576 to QC_PROBABLY_BAD because raw conductivity spikes 05:49:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1027) 2:4 7 441 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:49:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1027) 576 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:49:41 29 Mar 2016 UTC: INFO: QC.py(365): Changed (5/1027) 2:4 7 441 to QC_INTERPOLATED because temperature spikes 05:49:41 29 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1027) 1027 to QC_BAD because salinity below bound 05:49:41 29 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1027) 1027 to QC_BAD because bad salinity indicates conductivity issues 05:49:41 29 Mar 2016 UTC: INFO: QC.py(408): Changed (3/1027) 2 441 576 to QC_INTERPOLATED because conductivity spikes 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1027) 499:504 to QC_BAD because slow apogee CT flow 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1027) 1:11 to QC_BAD because prior to dive start 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1027) 1026 to QC_BAD because end of climb 05:49:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1027) 1:11 499:504 1026 1027 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:49:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1027) 1:11 499:504 1026 1027 to QC_BAD because changed corrected salin implies changed speed 05:49:42 29 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1027) 441 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1027) 576 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1027) 441 to QC_INTERPOLATED because changed corrected temp implies changed speed 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.58 cm/s 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.25 cm/s 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:49:42 29 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1027) 364 365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1027) 2:4 7 441 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:49:42 29 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (210/1027) 313 314 364 365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1027) 2:4 7 441 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1027) 1:11 499:504 1026 1027 to QC_BAD because changed salinity implies changed optode oxygen 05:49:42 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1027) 576 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 37: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.85% reduction 05:49:42 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.37 05:49:42 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.37 05:49:42 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:49:42 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:49:42 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 05:49:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 05:49:57 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 05:49:57 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 05:49:57 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 05:50:00 29 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:50:00 29 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:50:00 29 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:50:00 29 Mar 2016 UTC /home/sg146/p1460036.log /home/sg146/p1460036.eng /home/sg146/p1460037.log /home/sg146/p1460037.eng /home/sg146/p1460036.asc /home/sg146/p1460037.asc /home/sg146/p1460036.pro /home/sg146/p1460036.nc /home/sg146/p1460037.pro /home/sg146/p1460037.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 05:50:00 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:50:00 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:50:00 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:50:00 29 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:50:00 29 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:50:00 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:50:00 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:50:00 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:50:00 29 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 05:50:00 29 Mar 2016 UTC 10:54:39 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23065 10:54:39 29 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 11:00:43 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 23283 11:00:43 29 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:00:43 29 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:00:43 29 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:00:43 29 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:00:43 29 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160329010043 ] 11:00:43 29 Mar 2016 UTC: INFO: Base.py(1333): PID:23290 11:00:43 29 Mar 2016 UTC: INFO: Base.py(1375): Started processing 11:00:43 29 Mar 2016 UTC 11:00:43 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:00:43 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:00:43 29 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:00:43 29 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:00:43 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:00:43 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:00:43 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:43 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:00:43 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:43 29 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:38 calls_made:1 call_cycle:0 2157.7490 -15702.2330 03/29/16 10:52:31 UTC) to sdrifter@soest.hawaii.edu 11:00:44 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:44 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:00:44 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:44 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:00:44 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:44 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:00:44 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:44 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:00:44 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:38 calls_made:1 call_cycle:0 11:00:44 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:00:44 29 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:00:44 29 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 11:00:44 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0038lz 11:00:44 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0038lz.x01 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0038lz.1a.x00 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0038lz.b.1a.x01 11:00:44 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0038lz.r in process_file_group 11:00:44 29 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460038.log 11:00:44 29 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:00:44 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0038dz 11:00:44 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0038dz.x05 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.1a.x00 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.1a.x01 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.1a.x02 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.1a.x03 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0038dz.1a.x04 11:00:44 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0038dz.b.1a.x05 11:00:44 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0038dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 11:00:45 29 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [38] 11:00:45 29 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [38] 11:00:45 29 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460038) for profiles 11:00:45 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 11:00:45 29 Mar 2016 UTC: INFO: QC.py(365): Changed (8/1030) 3:6 410 426 588 592 to QC_PROBABLY_BAD because raw temperature spikes 11:00:45 29 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1030) 1030 to QC_BAD because raw salinity below bound 11:00:45 29 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1030) 1030 to QC_BAD because bad raw salinity indicates raw conductivity issues 11:00:45 29 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1030) 2 410 426 588 592 to QC_PROBABLY_BAD because raw conductivity spikes 11:00:45 29 Mar 2016 UTC: INFO: QC.py(180): Changed (8/1030) 3:6 410 426 588 592 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:00:45 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1030) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:00:45 29 Mar 2016 UTC: INFO: QC.py(365): Changed (8/1030) 3:6 410 426 588 592 to QC_INTERPOLATED because temperature spikes 11:00:45 29 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1030) 1030 to QC_BAD because salinity below bound 11:00:45 29 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1030) 1030 to QC_BAD because bad salinity indicates conductivity issues 11:00:45 29 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1030) 2 410 426 588 592 to QC_INTERPOLATED because conductivity spikes 11:00:45 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1030) 510:515 to QC_BAD because slow apogee CT flow 11:00:45 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/1030) 1:14 to QC_BAD because prior to dive start 11:00:45 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/1030) 1:14 510:515 1030 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:00:45 29 Mar 2016 UTC: INFO: QC.py(180): Changed (21/1030) 1:14 510:515 1030 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 11:00:46 29 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:00:46 29 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 38 interp_salinity data_points in_between 753 758 % suspect thermal-inertia points 757 11:00:46 29 Mar 2016 UTC: INFO: QC.py(180): Changed (4/1030) 410 426 588 592 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:00:46 29 Mar 2016 UTC: INFO: QC.py(180): Changed (4/1030) 410 426 588 592 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.97 cm/s 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:00:46 29 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (211/1030) 373:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:00:46 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1030) 3:6 426 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:00:46 29 Mar 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/1030) 1029 to QC_BAD because slow flow in SBE43 11:00:46 29 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (211/1030) 373:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:00:46 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1030) 3:6 426 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:00:46 29 Mar 2016 UTC: INFO: QC.py(180): Changed (21/1030) 1:14 510:515 1030 to QC_BAD because changed salinity implies changed optode oxygen 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:00:46 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 38: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.04% reduction 11:00:46 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.38 11:00:46 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.38 11:00:46 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:00:46 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:00:46 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 11:00:46 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 11:01:01 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 11:01:02 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 11:01:02 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 11:01:04 29 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:01:04 29 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:01:04 29 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:01:04 29 Mar 2016 UTC /home/sg146/p1460038.log /home/sg146/p1460038.eng /home/sg146/p1460038.asc /home/sg146/p1460038.pro /home/sg146/p1460038.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 11:01:04 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:01:04 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:01:04 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:01:04 29 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:01:04 29 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:01:04 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:01:04 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:01:04 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:01:04 29 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 11:01:04 29 Mar 2016 UTC 16:10:09 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31459 16:10:09 29 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 16:12:12 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 31521 16:12:12 29 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:12:12 29 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 16:12:12 29 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 16:12:12 29 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:12:12 29 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160329061212 ] 16:12:12 29 Mar 2016 UTC: INFO: Base.py(1333): PID:31528 16:12:12 29 Mar 2016 UTC: INFO: Base.py(1375): Started processing 16:12:12 29 Mar 2016 UTC 16:12:12 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 16:12:12 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 16:12:12 29 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 16:12:12 29 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 16:12:12 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:12:12 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:12 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:12 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:12:12 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:12 29 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:39 calls_made:4 call_cycle:0 2158.1270 -15701.4900 03/29/16 16:00:22 UTC) to sdrifter@soest.hawaii.edu 16:12:13 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:12:13 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:39 calls_made:4 call_cycle:0 16:12:13 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 16:12:13 29 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 16:12:13 29 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.39 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.39 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:12:13 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:13 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:12:13 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:12:13 29 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 16:12:13 29 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:12:13 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:12:13 29 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 16:12:13 29 Mar 2016 UTC 21:24:07 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7004 21:24:07 29 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 21:29:39 29 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 7132 21:29:39 29 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:29:39 29 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 21:29:39 29 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 21:29:39 29 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:29:39 29 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160329112938 ] 21:29:39 29 Mar 2016 UTC: INFO: Base.py(1333): PID:7140 21:29:39 29 Mar 2016 UTC: INFO: Base.py(1375): Started processing 21:29:39 29 Mar 2016 UTC 21:29:39 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 21:29:39 29 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 21:29:39 29 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 21:29:39 29 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 21:29:39 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:29:39 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:40 calls_made:1 call_cycle:0 2158.2210 -15701.5230 03/29/16 21:22:05 UTC) to sdrifter@soest.hawaii.edu 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:29:39 29 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:40 calls_made:1 call_cycle:0 21:29:39 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:29:39 29 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 21:29:40 29 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 21:29:40 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0039lz 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039lz.x00.PARTIAL.1a.1 21:29:40 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0039lz.r in process_file_group 21:29:40 29 Mar 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0039lz.r - expected 0x855633538, generated 0xd8069eea 21:29:40 29 Mar 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0039lz.r - expected 0x11f7e8a2, generated 0x105d 21:29:40 29 Mar 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0039lz.r - skipping 21:29:40 29 Mar 2016 UTC: ERROR: Base.py(243): Could not process sg0039lz - skipping 21:29:40 29 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 21:29:40 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0039lz 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039lz.x00.PARTIAL.1a.1 21:29:40 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0039lz.r in process_file_group 21:29:40 29 Mar 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0039lz.r - expected 0x855633538, generated 0xd8069eea 21:29:40 29 Mar 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0039lz.r - expected 0x11f7e8a2, generated 0x105d 21:29:40 29 Mar 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0039lz.r - skipping 21:29:40 29 Mar 2016 UTC: ERROR: Base.py(272): Could not process sg0039lz - skipping 21:29:40 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0040lz 21:29:40 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0040lz.x01 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0040lz.1a.x00 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0040lz.b.1a.x01 21:29:40 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0040lz.r in process_file_group 21:29:40 29 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460040.log 21:29:40 29 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 21:29:40 29 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0040dz 21:29:40 29 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0040dz.x05 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.1a.x00 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.1a.x01 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.1a.x02 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.1a.x03 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0040dz.1a.x04 21:29:40 29 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0040dz.b.1a.x05 21:29:40 29 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0040dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [40] 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [40] 21:29:40 29 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460040) for profiles 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 21:29:40 29 Mar 2016 UTC: INFO: QC.py(365): Changed (8/1038) 2 3 5:7 414 508 582 to QC_PROBABLY_BAD because raw temperature spikes 21:29:40 29 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1038) 1037 to QC_BAD because raw salinity below bound 21:29:40 29 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1038) 1037 to QC_BAD because bad raw salinity indicates raw conductivity issues 21:29:40 29 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1038) 414 582 to QC_PROBABLY_BAD because raw conductivity spikes 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1038) 1038 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 21:29:40 29 Mar 2016 UTC: INFO: QC.py(180): Changed (8/1038) 2 3 5:7 414 508 582 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:29:40 29 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1038) 1038 to QC_BAD because changed raw cond implies changed raw salinity 21:29:40 29 Mar 2016 UTC: INFO: QC.py(365): Changed (8/1038) 2 3 5:7 414 508 582 to QC_INTERPOLATED because temperature spikes 21:29:40 29 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1038) 1037 to QC_BAD because salinity below bound 21:29:40 29 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1038) 1037 to QC_BAD because bad salinity indicates conductivity issues 21:29:40 29 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1038) 414 582 to QC_INTERPOLATED because conductivity spikes 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1038) 1038 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1038) 506:511 to QC_BAD because slow apogee CT flow 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1038) 1:11 to QC_BAD because prior to dive start 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1038) 1036 to QC_BAD because end of climb 21:29:40 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1038) 1:11 506:511 1036:1038 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:29:40 29 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1038) 1:11 506:511 1036:1038 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 21:29:41 29 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 21:29:41 29 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 40 interp_salinity data_points in_between 195 201 % suspect thermal-inertia points 197 21:29:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1038) 414 582 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:29:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1038) 414 582 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:29:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.96 cm/s 21:29:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.32 cm/s 21:29:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:29:41 29 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (214/1038) 365 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:29:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1038) 2 3 5:7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:29:41 29 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (214/1038) 365 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 21:29:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1038) 2 3 5:7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:29:41 29 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1038) 1:11 506:511 1036:1038 to QC_BAD because changed salinity implies changed optode oxygen 21:29:41 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:29:41 29 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 21:29:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 40: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.93% reduction 21:29:42 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.40 21:29:42 29 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.40 21:29:42 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:29:42 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:29:42 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:29:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 21:29:42 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 21:29:57 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 21:29:58 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 21:29:58 29 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 21:30:00 29 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:30:00 29 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:30:00 29 Mar 2016 UTC: ERROR: Base.py(1960): Dive [39] failed to process completely. The following files were not processed completely: /home/sg146/sg0039lz.r File ./sg0039lz.x00.PARTIAL.1 is a PARTIAL file - consider resend_dive /l 39 00 Glider logout not seen - retransmissions from glider possible Consult baselog_160329112938 for details. 21:30:00 29 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:30:00 29 Mar 2016 UTC /home/sg146/p1460040.log /home/sg146/p1460040.eng /home/sg146/p1460040.asc /home/sg146/p1460040.pro /home/sg146/p1460040.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 21:30:00 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:30:00 29 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:30:00 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:30:01 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:30:01 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:30:01 29 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:30:01 29 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:30:01 29 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 21:30:01 29 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 21:30:01 29 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:30:01 29 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:30:01 29 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:30:01 29 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 21:30:01 29 Mar 2016 UTC 02:54:51 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 16089 02:54:51 30 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {P} 03:04:01 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 16480 03:04:01 30 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:04:01 30 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:04:01 30 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:04:01 30 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:04:01 30 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160329170400 ] 03:04:01 30 Mar 2016 UTC: INFO: Base.py(1333): PID:16487 03:04:01 30 Mar 2016 UTC: INFO: Base.py(1375): Started processing 03:04:01 30 Mar 2016 UTC 03:04:01 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:04:01 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:04:01 30 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:04:01 30 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:04:01 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:04:01 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:41 calls_made:3 call_cycle:0 2158.9170 -15700.8540 03/30/16 02:48:05 UTC) to sdrifter@soest.hawaii.edu 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:04:01 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:41 calls_made:3 call_cycle:0 03:04:01 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:04:01 30 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:04:02 30 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:04:02 30 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:04:02 30 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:04:02 30 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:04:02 30 Mar 2016 UTC: INFO: Base.py(743): Processing ./sg0041pz.000 03:04:02 30 Mar 2016 UTC: INFO: Base.py(1593): Processed pdos logfile(s) ['sg0041pz.000'] 03:04:02 30 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:04:02 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 03:04:02 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0039lz 03:04:02 30 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0039lz.x01 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039lz.1a.x00 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0039lz.b.1a.x01 03:04:02 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0039lz.r in process_file_group 03:04:02 30 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460039.log 03:04:02 30 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:04:02 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0039dz 03:04:02 30 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0039dz.x05 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.1a.x00 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.1a.x01 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.1a.x02 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.1a.x03 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0039dz.1a.x04 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0039dz.b.1a.x05 03:04:02 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0039dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 03:04:02 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0041lz 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041lz.1a.x00 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041lz.1a.x01 03:04:02 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0041lz.r in process_file_group 03:04:02 30 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460041.log 03:04:02 30 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:04:02 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0041dz 03:04:02 30 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0041dz.x05 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.1a.x00 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.1a.x01 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.1a.x02 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.1a.x03 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0041dz.1a.x04 03:04:02 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0041dz.b.1a.x05 03:04:02 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0041dz.r in process_file_group 03:04:03 30 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [39, 41] 03:04:03 30 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [39, 41] 03:04:03 30 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460039) for profiles 03:04:03 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 03:04:03 30 Mar 2016 UTC: INFO: QC.py(365): Changed (8/1010) 3:5 8 401 494 496 559 to QC_PROBABLY_BAD because raw temperature spikes 03:04:03 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1010) 1010 to QC_BAD because raw salinity below bound 03:04:03 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1010) 1010 to QC_BAD because bad raw salinity indicates raw conductivity issues 03:04:03 30 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1010) 2 3 5 401 559 to QC_PROBABLY_BAD because raw conductivity spikes 03:04:03 30 Mar 2016 UTC: INFO: QC.py(180): Changed (8/1010) 3:5 8 401 494 496 559 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:04:03 30 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1010) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:04:03 30 Mar 2016 UTC: INFO: QC.py(365): Changed (8/1010) 3:5 8 401 494 496 559 to QC_INTERPOLATED because temperature spikes 03:04:03 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1010) 1010 to QC_BAD because salinity below bound 03:04:03 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1010) 1010 to QC_BAD because bad salinity indicates conductivity issues 03:04:03 30 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1010) 2 3 5 401 559 to QC_INTERPOLATED because conductivity spikes 03:04:03 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1010) 494:499 to QC_BAD because slow apogee CT flow 03:04:03 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1010) 1:11 to QC_BAD because prior to dive start 03:04:03 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1010) 1008 1009 to QC_BAD because end of climb 03:04:03 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1010) 1:11 494:499 1008:1010 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:04:03 30 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1010) 1:11 494:499 1008:1010 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 03:04:04 30 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:04:04 30 Mar 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 39 interp_salinity data_points in_between 755 765 % suspect thermal-inertia points 760 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1010) 401 559 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1010) 401 559 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.78 cm/s 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:04:04 30 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (209/1010) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1010) 3:5 8 401 496 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:04:04 30 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (209/1010) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1010) 3:5 8 401 496 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1010) 1:11 494:499 1008:1010 to QC_BAD because changed salinity implies changed optode oxygen 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:04:04 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 39: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.98% reduction 03:04:04 30 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460041) for profiles 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 03:04:04 30 Mar 2016 UTC: INFO: QC.py(365): Changed (10/1040) 5 7 10 421 422 434 510 536 567 581 to QC_PROBABLY_BAD because raw temperature spikes 03:04:04 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1040) 1040 to QC_BAD because raw salinity below bound 03:04:04 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1040) 1040 to QC_BAD because bad raw salinity indicates raw conductivity issues 03:04:04 30 Mar 2016 UTC: INFO: QC.py(408): Changed (7/1040) 2 5 6 421 536 567 581 to QC_PROBABLY_BAD because raw conductivity spikes 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (10/1040) 5 7 10 421 422 434 510 536 567 581 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1040) 2 6 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 03:04:04 30 Mar 2016 UTC: INFO: QC.py(365): Changed (10/1040) 5 7 10 421 422 434 510 536 567 581 to QC_INTERPOLATED because temperature spikes 03:04:04 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1040) 1040 to QC_BAD because salinity below bound 03:04:04 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1040) 1040 to QC_BAD because bad salinity indicates conductivity issues 03:04:04 30 Mar 2016 UTC: INFO: QC.py(408): Changed (7/1040) 2 5 6 421 536 567 581 to QC_INTERPOLATED because conductivity spikes 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1040) 508:513 to QC_BAD because slow apogee CT flow 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/1040) 1:14 to QC_BAD because prior to dive start 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1040) 1039 to QC_BAD because end of climb 03:04:04 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (22/1040) 1:14 508:513 1039 1040 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:04:04 30 Mar 2016 UTC: INFO: QC.py(180): Changed (22/1040) 1:14 508:513 1039 1040 to QC_BAD because changed corrected salin implies changed speed 03:04:05 30 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:04:05 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1040) 421 422 434 536 567 581 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:04:05 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1040) 421 422 434 536 567 581 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.39 cm/s 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:04:05 30 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (212/1040) 370 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:04:05 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1040) 5 7 10 421 536 581 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:04:05 30 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (212/1040) 370 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 03:04:05 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1040) 5 7 10 421 536 581 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:04:05 30 Mar 2016 UTC: INFO: QC.py(180): Changed (22/1040) 1:14 508:513 1039 1040 to QC_BAD because changed salinity implies changed optode oxygen 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 41: Data set size for profile, binned and kkyy files reduced by 22 points, a 2.12% reduction 03:04:05 30 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.41 03:04:05 30 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./pdoscmds.bat to ./pdoscmds.bat.41 03:04:05 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:04:05 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:04:05 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 03:04:05 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 03:04:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 181, max_depth_dive_num = 27 03:04:23 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 03:04:23 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 03:04:26 30 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:04:26 30 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:04:26 30 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:04:26 30 Mar 2016 UTC /home/sg146/p1460039.log /home/sg146/p1460039.eng /home/sg146/p1460041.log /home/sg146/p1460041.eng /home/sg146/p1460039.asc /home/sg146/p1460041.asc /home/sg146/p1460039.pro /home/sg146/p1460039.nc /home/sg146/p1460041.pro /home/sg146/p1460041.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 03:04:26 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:04:26 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:04:26 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:04:26 30 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:04:26 30 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:04:26 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:04:26 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:04:26 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:04:26 30 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 03:04:26 30 Mar 2016 UTC 13:27:31 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 32324 13:27:31 30 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 13:39:27 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 32632 13:39:27 30 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 13:39:27 30 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 13:39:27 30 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 13:39:27 30 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 13:39:27 30 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160330033926 ] 13:39:27 30 Mar 2016 UTC: INFO: Base.py(1333): PID:32639 13:39:27 30 Mar 2016 UTC: INFO: Base.py(1375): Started processing 13:39:27 30 Mar 2016 UTC 13:39:27 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 13:39:27 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 13:39:27 30 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 13:39:27 30 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 13:39:27 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 13:39:27 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:39:27 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:27 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:39:27 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:27 30 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:43 calls_made:1 call_cycle:0 2201.0660 -15659.2700 03/30/16 13:25:25 UTC) to sdrifter@soest.hawaii.edu 13:39:32 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:32 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:39:32 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:32 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:39:32 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:32 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:39:32 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:32 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:39:32 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:43 calls_made:1 call_cycle:0 13:39:32 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:39:32 30 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 13:39:32 30 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 13:39:33 30 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 13:39:33 30 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 13:39:33 30 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 13:39:33 30 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 13:39:33 30 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 13:39:33 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 13:39:33 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 13:39:33 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0042lz 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042lz.1a.x00 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042lz.1a.x01 13:39:33 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0042lz.r in process_file_group 13:39:33 30 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460042.log 13:39:33 30 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 13:39:33 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0042dz 13:39:33 30 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0042dz.x05 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.1a.x00 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.1a.x01 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.1a.x02 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.1a.x03 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0042dz.1a.x04 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0042dz.b.1a.x05 13:39:33 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0042dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 13:39:33 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0043lz 13:39:33 30 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0043lz.x01 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043lz.1a.x00 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0043lz.b.1a.x01 13:39:33 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0043lz.r in process_file_group 13:39:33 30 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460043.log 13:39:33 30 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 13:39:33 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0043dz 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.1a.x00 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.1a.x01 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.1a.x02 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.1a.x03 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.1a.x04 13:39:33 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0043dz.1a.x05 13:39:33 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0043dz.r in process_file_group 13:39:34 30 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [42, 43] 13:39:34 30 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [42, 43] 13:39:34 30 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460042) for profiles 13:39:34 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 13:39:34 30 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1030) 3 6 13 472 473 592 to QC_PROBABLY_BAD because raw temperature spikes 13:39:34 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1030) 1030 to QC_BAD because raw salinity below bound 13:39:34 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1030) 1030 to QC_BAD because bad raw salinity indicates raw conductivity issues 13:39:34 30 Mar 2016 UTC: INFO: QC.py(408): Changed (1/1030) 472 to QC_PROBABLY_BAD because raw conductivity spikes 13:39:34 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1030) 3 6 13 472 473 592 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:39:34 30 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1030) 3 6 13 472 473 592 to QC_INTERPOLATED because temperature spikes 13:39:34 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1030) 1030 to QC_BAD because salinity below bound 13:39:34 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1030) 1030 to QC_BAD because bad salinity indicates conductivity issues 13:39:34 30 Mar 2016 UTC: INFO: QC.py(408): Changed (1/1030) 472 to QC_INTERPOLATED because conductivity spikes 13:39:34 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1030) 508:513 to QC_BAD because slow apogee CT flow 13:39:34 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/1030) 1:14 to QC_BAD because prior to dive start 13:39:34 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1030) 1029 to QC_BAD because end of climb 13:39:34 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (22/1030) 1:14 508:513 1029 1030 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:39:34 30 Mar 2016 UTC: INFO: QC.py(180): Changed (22/1030) 1:14 508:513 1029 1030 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 13:39:35 30 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1030) 472 473 592 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1030) 472 473 592 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.56 cm/s 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:39:35 30 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (215/1030) 368:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1030) 3 6 13 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:39:35 30 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (215/1030) 368:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1030) 3 6 13 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (22/1030) 1:14 508:513 1029 1030 to QC_BAD because changed salinity implies changed optode oxygen 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 13:39:35 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 42: Data set size for profile, binned and kkyy files reduced by 22 points, a 2.14% reduction 13:39:35 30 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460043) for profiles 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 13:39:35 30 Mar 2016 UTC: INFO: QC.py(365): Changed (11/1018) 3:5 7 536 549 550 555:557 566 to QC_PROBABLY_BAD because raw temperature spikes 13:39:35 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1018) 1018 to QC_BAD because raw salinity below bound 13:39:35 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1018) 1018 to QC_BAD because bad raw salinity indicates raw conductivity issues 13:39:35 30 Mar 2016 UTC: INFO: QC.py(408): Changed (8/1018) 4 406 549 550 556 557 560 566 to QC_PROBABLY_BAD because raw conductivity spikes 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (11/1018) 3:5 7 536 549 550 555:557 566 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1018) 406 560 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 13:39:35 30 Mar 2016 UTC: INFO: QC.py(365): Changed (11/1018) 3:5 7 536 549 550 555:557 566 to QC_INTERPOLATED because temperature spikes 13:39:35 30 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1018) 1018 to QC_BAD because salinity below bound 13:39:35 30 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1018) 1018 to QC_BAD because bad salinity indicates conductivity issues 13:39:35 30 Mar 2016 UTC: INFO: QC.py(408): Changed (8/1018) 4 406 549 550 556 557 560 566 to QC_INTERPOLATED because conductivity spikes 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1018) 493:498 to QC_BAD because slow apogee CT flow 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1018) 1:10 to QC_BAD because prior to dive start 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1018) 1017 to QC_BAD because end of climb 13:39:35 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1018) 1:10 493:498 1017 1018 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 13:39:35 30 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1018) 1:10 493:498 1017 1018 to QC_BAD because changed corrected salin implies changed speed 13:39:36 30 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1018) 536 549 550 555:557 566 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1018) 406 560 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1018) 536 549 550 555:557 566 to QC_INTERPOLATED because changed corrected temp implies changed speed 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.52 cm/s 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.32 cm/s 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 13:39:36 30 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (207/1018) 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1018) 3:5 7 536 556 566 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 13:39:36 30 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (207/1018) 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (7/1018) 3:5 7 536 556 566 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1018) 1:10 493:498 1017 1018 to QC_BAD because changed salinity implies changed optode oxygen 13:39:36 30 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1018) 406 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 43: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.77% reduction 13:39:36 30 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.43 13:39:36 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 13:39:36 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 13:39:36 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 13:39:36 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 13:39:54 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 13:39:55 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 13:39:55 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 13:39:58 30 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 13:39:58 30 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 13:39:58 30 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 13:39:58 30 Mar 2016 UTC /home/sg146/p1460042.log /home/sg146/p1460042.eng /home/sg146/p1460043.log /home/sg146/p1460043.eng /home/sg146/p1460042.asc /home/sg146/p1460043.asc /home/sg146/p1460042.pro /home/sg146/p1460042.nc /home/sg146/p1460043.pro /home/sg146/p1460043.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 13:39:58 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:39:58 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 13:39:58 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 13:39:58 30 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 13:39:58 30 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 13:39:58 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 13:39:58 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 13:39:58 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 13:39:58 30 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 13:39:58 30 Mar 2016 UTC 18:42:14 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 8208 18:42:14 30 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:49:20 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 8335 18:49:20 30 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:49:20 30 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 18:49:20 30 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 18:49:20 30 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:49:20 30 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160330084919 ] 18:49:20 30 Mar 2016 UTC: INFO: Base.py(1333): PID:8342 18:49:20 30 Mar 2016 UTC: INFO: Base.py(1375): Started processing 18:49:20 30 Mar 2016 UTC 18:49:20 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 18:49:20 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 18:49:20 30 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 18:49:20 30 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 18:49:20 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:49:20 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:44 calls_made:1 call_cycle:0 2202.1670 -15658.7760 03/30/16 18:40:05 UTC) to sdrifter@soest.hawaii.edu 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:49:20 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:44 calls_made:1 call_cycle:0 18:49:20 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:49:20 30 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 18:49:21 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 18:49:21 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 18:49:21 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0044lz 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044lz.1a.x00 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044lz.1a.x01 18:49:21 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0044lz.r in process_file_group 18:49:21 30 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460044.log 18:49:21 30 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 18:49:21 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0044dz 18:49:21 30 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0044dz.x05 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.1a.x00 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.1a.x01 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.1a.x02 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.1a.x03 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0044dz.1a.x04 18:49:21 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0044dz.b.1a.x05 18:49:21 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0044dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [44] 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [44] 18:49:21 30 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460044) for profiles 18:49:21 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 18:49:22 30 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1035) 2 4 6 9:11 to QC_PROBABLY_BAD because raw temperature spikes 18:49:22 30 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1035) 2 498 to QC_PROBABLY_BAD because raw conductivity spikes 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1035) 1035 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1035) 2 4 6 9:11 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1035) 498 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1035) 1035 to QC_BAD because changed raw cond implies changed raw salinity 18:49:22 30 Mar 2016 UTC: INFO: QC.py(365): Changed (6/1035) 2 4 6 9:11 to QC_INTERPOLATED because temperature spikes 18:49:22 30 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1035) 2 498 to QC_INTERPOLATED because conductivity spikes 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1035) 1035 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1035) 496:501 to QC_BAD because slow apogee CT flow 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/1035) 1:14 to QC_BAD because prior to dive start 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1035) 1034 to QC_BAD because end of climb 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (22/1035) 1:14 496:501 1034 1035 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (22/1035) 1:14 496:501 1034 1035 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 18:49:22 30 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.85 cm/s 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:49:22 30 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (205/1035) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1035) 2 4 6 9:11 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:49:22 30 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (205/1035) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (6/1035) 2 4 6 9:11 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:49:22 30 Mar 2016 UTC: INFO: QC.py(180): Changed (22/1035) 1:14 496:501 1034 1035 to QC_BAD because changed salinity implies changed optode oxygen 18:49:22 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:49:22 30 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 18:49:23 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 44: Data set size for profile, binned and kkyy files reduced by 22 points, a 2.13% reduction 18:49:23 30 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.44 18:49:23 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:49:23 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:49:23 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:49:23 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 18:49:23 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 18:49:41 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 18:49:42 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 18:49:42 30 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 18:49:45 30 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:49:45 30 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:49:45 30 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:49:45 30 Mar 2016 UTC /home/sg146/p1460044.log /home/sg146/p1460044.eng /home/sg146/p1460044.asc /home/sg146/p1460044.pro /home/sg146/p1460044.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 18:49:45 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:49:45 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:49:45 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:49:45 30 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 18:49:45 30 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 18:49:45 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:49:45 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:49:45 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:49:45 30 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 18:49:45 30 Mar 2016 UTC 23:55:30 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17598 23:55:30 30 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 23:59:17 30 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 17712 23:59:17 30 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:59:17 30 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:59:17 30 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:59:17 30 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:59:17 30 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160330135917 ] 23:59:17 30 Mar 2016 UTC: INFO: Base.py(1333): PID:17719 23:59:18 30 Mar 2016 UTC: INFO: Base.py(1375): Started processing 23:59:18 30 Mar 2016 UTC 23:59:18 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:59:18 30 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:59:18 30 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 23:59:18 30 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:59:18 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:59:18 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:45 calls_made:3 call_cycle:0 2202.8740 -15658.2530 03/30/16 23:48:34 UTC) to sdrifter@soest.hawaii.edu 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:59:18 30 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:3 call_cycle:0 23:59:18 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:59:18 30 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:59:18 30 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:59:19 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 23:59:19 30 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 23:59:19 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0045lz 23:59:19 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045lz.x00.PARTIAL.1a.1 23:59:19 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0045lz.r in process_file_group 23:59:19 30 Mar 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0045lz.r - expected 0x605440585, generated 0xd6fd4fc1 23:59:19 30 Mar 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0045lz.r - expected 0xc18a814b, generated 0x880 23:59:19 30 Mar 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0045lz.r - skipping 23:59:19 30 Mar 2016 UTC: ERROR: Base.py(243): Could not process sg0045lz - skipping 23:59:19 30 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 23:59:19 30 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0045lz 23:59:19 30 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045lz.x00.PARTIAL.1a.1 23:59:19 30 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0045lz.r in process_file_group 23:59:19 30 Mar 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0045lz.r - expected 0x605440585, generated 0xd6fd4fc1 23:59:19 30 Mar 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0045lz.r - expected 0xc18a814b, generated 0x880 23:59:19 30 Mar 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0045lz.r - skipping 23:59:19 30 Mar 2016 UTC: ERROR: Base.py(272): Could not process sg0045lz - skipping 23:59:19 30 Mar 2016 UTC: WARNING: Base.py(1624): No dives to process 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [] 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1780): No dives found to profile 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.45 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.45 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:59:19 30 Mar 2016 UTC: ERROR: Base.py(1960): Dive [45] failed to process completely. The following files were not processed completely: /home/sg146/sg0045lz.r File ./sg0045lz.x00.PARTIAL.1 is a PARTIAL file - consider resend_dive /l 45 00 Glider logout not seen - retransmissions from glider possible Consult baselog_160330135917 for details. 23:59:19 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:59:19 30 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:59:19 30 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:59:19 30 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:59:19 30 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:59:19 30 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:59:19 30 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 23:59:19 30 Mar 2016 UTC 00:03:30 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18124 00:03:30 31 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:08:25 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 18261 00:08:25 31 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:08:25 31 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:08:25 31 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:08:25 31 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:08:25 31 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160330140824 ] 00:08:25 31 Mar 2016 UTC: INFO: Base.py(1333): PID:18268 00:08:25 31 Mar 2016 UTC: INFO: Base.py(1375): Started processing 00:08:25 31 Mar 2016 UTC 00:08:25 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:08:25 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:08:25 31 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:08:25 31 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:08:25 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:08:25 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:45 calls_made:5 call_cycle:0 2202.8740 -15658.2530 03/30/16 23:48:34 UTC) to sdrifter@soest.hawaii.edu 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:08:25 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:45 calls_made:5 call_cycle:0 00:08:25 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:08:25 31 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:08:26 31 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:08:26 31 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:08:26 31 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:08:26 31 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:08:26 31 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:08:26 31 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:08:26 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 00:08:26 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 00:08:26 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0045lz 00:08:26 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0045lz.x01 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045lz.1a.x00 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0045lz.b.1a.x01 00:08:26 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0045lz.r in process_file_group 00:08:26 31 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460045.log 00:08:26 31 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:08:26 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0045dz 00:08:26 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0045dz.x05 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.1a.x00 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.1a.x01 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.1a.x02 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.1a.x03 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0045dz.1a.x04 00:08:26 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0045dz.b.1a.x05 00:08:26 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0045dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 00:08:27 31 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [45] 00:08:27 31 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [45] 00:08:27 31 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460045) for profiles 00:08:27 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 00:08:27 31 Mar 2016 UTC: INFO: QC.py(365): Changed (5/1026) 2 3 6 7 407 to QC_PROBABLY_BAD because raw temperature spikes 00:08:27 31 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1026) 1026 to QC_BAD because raw salinity below bound 00:08:27 31 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1026) 1026 to QC_BAD because bad raw salinity indicates raw conductivity issues 00:08:27 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1026) 1025 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 00:08:27 31 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1026) 2 3 6 7 407 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:08:27 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1026) 1025 to QC_BAD because changed raw cond implies changed raw salinity 00:08:27 31 Mar 2016 UTC: INFO: QC.py(365): Changed (5/1026) 2 3 6 7 407 to QC_INTERPOLATED because temperature spikes 00:08:27 31 Mar 2016 UTC: INFO: QC.py(377): Changed (1/1026) 1026 to QC_BAD because salinity below bound 00:08:27 31 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1026) 1026 to QC_BAD because bad salinity indicates conductivity issues 00:08:27 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1026) 1025 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 00:08:27 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1026) 489:494 to QC_BAD because slow apogee CT flow 00:08:27 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1026) 1:10 to QC_BAD because prior to dive start 00:08:27 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1026) 1:10 489:494 1025 1026 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:08:27 31 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1026) 1:10 489:494 1025 1026 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 00:08:28 31 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:08:28 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1026) 407 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:08:28 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1026) 407 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.06 cm/s 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.34 cm/s 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:08:28 31 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (207/1026) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:08:28 31 Mar 2016 UTC: INFO: QC.py(180): Changed (4/1026) 2 3 6 7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:08:28 31 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (207/1026) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:08:28 31 Mar 2016 UTC: INFO: QC.py(180): Changed (4/1026) 2 3 6 7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:08:28 31 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1026) 1:10 489:494 1025 1026 to QC_BAD because changed salinity implies changed optode oxygen 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:08:28 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 45: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.75% reduction 00:08:28 31 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.45 00:08:28 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:08:28 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:08:28 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 00:08:28 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 00:08:47 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 00:08:48 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 00:08:48 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 00:08:51 31 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:08:51 31 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:08:51 31 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:08:51 31 Mar 2016 UTC /home/sg146/p1460045.log /home/sg146/p1460045.eng /home/sg146/p1460045.asc /home/sg146/p1460045.pro /home/sg146/p1460045.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 00:08:51 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:08:51 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:08:51 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:08:51 31 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:08:51 31 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:08:51 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:08:51 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:08:51 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:08:51 31 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 00:08:51 31 Mar 2016 UTC 05:11:33 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26410 05:11:33 31 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:16:12 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 26540 05:16:12 31 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:16:12 31 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 05:16:12 31 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 05:16:12 31 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:16:13 31 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160330191612 ] 05:16:13 31 Mar 2016 UTC: INFO: Base.py(1333): PID:26547 05:16:13 31 Mar 2016 UTC: INFO: Base.py(1375): Started processing 05:16:13 31 Mar 2016 UTC 05:16:13 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 05:16:13 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 05:16:13 31 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 05:16:13 31 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 05:16:13 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:16:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:46 calls_made:1 call_cycle:0 2202.9230 -15657.4230 03/31/16 05:09:22 UTC) to sdrifter@soest.hawaii.edu 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:16:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:46 calls_made:1 call_cycle:0 05:16:13 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:16:13 31 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:16:13 31 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 05:16:14 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 05:16:14 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 05:16:14 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0046lz 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046lz.1a.x00 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046lz.1a.x01 05:16:14 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0046lz.r in process_file_group 05:16:14 31 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460046.log 05:16:14 31 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 05:16:14 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0046dz 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.1a.x00 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.1a.x01 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.1a.x02 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.1a.x03 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.1a.x04 05:16:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0046dz.1a.x05 05:16:14 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0046dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [46] 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [46] 05:16:14 31 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460046) for profiles 05:16:14 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 05:16:14 31 Mar 2016 UTC: INFO: QC.py(365): Changed (3/1017) 3 7 1016 to QC_PROBABLY_BAD because raw temperature spikes 05:16:14 31 Mar 2016 UTC: INFO: QC.py(377): Changed (2/1017) 1016 1017 to QC_BAD because raw salinity below bound 05:16:14 31 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1017) 1017 to QC_BAD because bad raw salinity indicates raw conductivity issues 05:16:14 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1017) 3 7 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:16:14 31 Mar 2016 UTC: INFO: QC.py(365): Changed (3/1017) 3 7 1016 to QC_INTERPOLATED because temperature spikes 05:16:14 31 Mar 2016 UTC: INFO: QC.py(377): Changed (2/1017) 1016 1017 to QC_BAD because salinity below bound 05:16:14 31 Mar 2016 UTC: INFO: QC.py(388): Changed (2/1017) 1016 1017 to QC_BAD because bad salinity indicates conductivity issues 05:16:14 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1017) 483:488 to QC_BAD because slow apogee CT flow 05:16:14 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1017) 1:11 to QC_BAD because prior to dive start 05:16:14 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1017) 1015 to QC_BAD because end of climb 05:16:14 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1017) 1:11 483:488 1015:1017 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:16:14 31 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1017) 1:11 483:488 1015:1017 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 05:16:15 31 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:16:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.47 cm/s 05:16:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.34 cm/s 05:16:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:16:15 31 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (212/1017) 347:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:16:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1017) 3 7 1016 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:16:15 31 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (212/1017) 347:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 05:16:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1017) 3 7 1016 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:16:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (20/1017) 1:11 483:488 1015:1017 to QC_BAD because changed salinity implies changed optode oxygen 05:16:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:16:15 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 05:16:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 46: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.97% reduction 05:16:16 31 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.46 05:16:16 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:16:16 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:16:16 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:16:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 05:16:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 05:16:35 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 05:16:36 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 05:16:36 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 05:16:39 31 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:16:39 31 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:16:39 31 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:16:39 31 Mar 2016 UTC /home/sg146/p1460046.log /home/sg146/p1460046.eng /home/sg146/p1460046.asc /home/sg146/p1460046.pro /home/sg146/p1460046.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 05:16:39 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:16:39 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:16:39 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:16:39 31 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:16:39 31 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:16:39 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:16:39 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:16:39 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:16:39 31 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 05:16:39 31 Mar 2016 UTC 10:18:07 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2444 10:18:08 31 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:23:08 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 2649 10:23:08 31 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:23:08 31 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:23:08 31 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:23:08 31 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:23:08 31 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160331002307 ] 10:23:08 31 Mar 2016 UTC: INFO: Base.py(1333): PID:2656 10:23:08 31 Mar 2016 UTC: INFO: Base.py(1375): Started processing 10:23:08 31 Mar 2016 UTC 10:23:08 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:23:08 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:23:08 31 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:23:08 31 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:23:08 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:23:08 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:47 calls_made:1 call_cycle:0 2203.0670 -15656.9150 03/31/16 10:15:55 UTC) to sdrifter@soest.hawaii.edu 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:23:08 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:47 calls_made:1 call_cycle:0 10:23:08 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:23:08 31 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:23:09 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 10:23:09 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 10:23:09 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0047lz 10:23:09 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0047lz.x01 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0047lz.1a.x00 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0047lz.b.1a.x01 10:23:09 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0047lz.r in process_file_group 10:23:09 31 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460047.log 10:23:09 31 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 10:23:09 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0047dz 10:23:09 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0047dz.x05 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.1a.x00 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.1a.x01 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.1a.x02 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.1a.x03 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0047dz.1a.x04 10:23:09 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0047dz.b.1a.x05 10:23:09 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0047dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [47] 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [47] 10:23:09 31 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460047) for profiles 10:23:09 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 10:23:10 31 Mar 2016 UTC: INFO: QC.py(365): Changed (5/1004) 2 3 5 9 398 to QC_PROBABLY_BAD because raw temperature spikes 10:23:10 31 Mar 2016 UTC: INFO: QC.py(408): Changed (3/1004) 44 398 581 to QC_PROBABLY_BAD because raw conductivity spikes 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (5/1004) 2 3 5 9 398 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1004) 44 581 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:23:10 31 Mar 2016 UTC: INFO: QC.py(365): Changed (5/1004) 2 3 5 9 398 to QC_INTERPOLATED because temperature spikes 10:23:10 31 Mar 2016 UTC: INFO: QC.py(408): Changed (3/1004) 44 398 581 to QC_INTERPOLATED because conductivity spikes 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1004) 490:495 to QC_BAD because slow apogee CT flow 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1004) 1:10 to QC_BAD because prior to dive start 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1004) 1003 1004 to QC_BAD because end of climb 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1004) 1:10 490:495 1003 1004 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1004) 1:10 490:495 1003 1004 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 10:23:10 31 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1004) 398 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1004) 44 581 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1004) 398 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.35 cm/s 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.36 cm/s 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:23:10 31 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (210/1004) 353:355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (4/1004) 2 3 5 9 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:23:10 31 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (210/1004) 353:355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (4/1004) 2 3 5 9 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1004) 1:10 490:495 1003 1004 to QC_BAD because changed salinity implies changed optode oxygen 10:23:10 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1004) 44 581 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 10:23:10 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:23:10 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 10:23:11 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 47: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.79% reduction 10:23:11 31 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.47 10:23:11 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:23:11 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:23:11 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:23:11 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 10:23:11 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 10:23:31 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 10:23:31 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 10:23:31 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 10:23:35 31 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:23:35 31 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:23:35 31 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:23:35 31 Mar 2016 UTC /home/sg146/p1460047.log /home/sg146/p1460047.eng /home/sg146/p1460047.asc /home/sg146/p1460047.pro /home/sg146/p1460047.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 10:23:35 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:23:35 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:23:35 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:23:35 31 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:23:35 31 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:23:35 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:23:35 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:23:35 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:23:35 31 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 10:23:35 31 Mar 2016 UTC 15:20:57 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10803 15:20:57 31 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 15:27:13 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 10950 15:27:13 31 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:27:13 31 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 15:27:13 31 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 15:27:13 31 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:27:13 31 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160331052712 ] 15:27:13 31 Mar 2016 UTC: INFO: Base.py(1333): PID:10957 15:27:13 31 Mar 2016 UTC: INFO: Base.py(1375): Started processing 15:27:13 31 Mar 2016 UTC 15:27:13 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 15:27:13 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 15:27:13 31 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 15:27:13 31 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 15:27:13 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:27:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:27:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:13 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:27:13 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:13 31 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:48 calls_made:1 call_cycle:0 2203.6910 -15655.5070 03/31/16 15:18:35 UTC) to sdrifter@soest.hawaii.edu 15:27:14 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:14 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:27:14 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:14 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:27:14 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:14 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:27:14 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:14 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:27:14 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:48 calls_made:1 call_cycle:0 15:27:14 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:27:14 31 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 15:27:14 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 15:27:14 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 15:27:14 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0048lz 15:27:14 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0048lz.x01 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0048lz.1a.x00 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0048lz.b.1a.x01 15:27:14 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0048lz.r in process_file_group 15:27:14 31 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460048.log 15:27:14 31 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 15:27:14 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0048dz 15:27:14 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0048dz.x05 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.1a.x00 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.1a.x01 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.1a.x02 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.1a.x03 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0048dz.1a.x04 15:27:14 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0048dz.b.1a.x05 15:27:14 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0048dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 15:27:15 31 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [48] 15:27:15 31 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [48] 15:27:15 31 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460048) for profiles 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 15:27:15 31 Mar 2016 UTC: INFO: QC.py(365): Changed (3/1002) 2 3 5 to QC_PROBABLY_BAD because raw temperature spikes 15:27:15 31 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1002) 2 822 to QC_PROBABLY_BAD because raw conductivity spikes 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1002) 1002 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 15:27:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1002) 2 3 5 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:27:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1002) 822 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:27:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1002) 1002 to QC_BAD because changed raw cond implies changed raw salinity 15:27:15 31 Mar 2016 UTC: INFO: QC.py(365): Changed (3/1002) 2 3 5 to QC_INTERPOLATED because temperature spikes 15:27:15 31 Mar 2016 UTC: INFO: QC.py(408): Changed (2/1002) 2 822 to QC_INTERPOLATED because conductivity spikes 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1002) 1002 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1002) 475:480 to QC_BAD because slow apogee CT flow 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1002) 1:10 to QC_BAD because prior to dive start 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1002) 1001 to QC_BAD because end of climb 15:27:15 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1002) 1:10 475:480 1001 1002 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:27:15 31 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1002) 1:10 475:480 1001 1002 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 15:27:16 31 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:27:16 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1002) 822 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.96 cm/s 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 2.99 cm/s 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:27:16 31 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (207/1002) 343:345 347:350 352:355 357:360 362:365 367:370 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:27:16 31 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1002) 2 3 5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:27:16 31 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (207/1002) 343:345 347:350 352:355 357:360 362:365 367:370 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 15:27:16 31 Mar 2016 UTC: INFO: QC.py(180): Changed (3/1002) 2 3 5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:27:16 31 Mar 2016 UTC: INFO: QC.py(180): Changed (18/1002) 1:10 475:480 1001 1002 to QC_BAD because changed salinity implies changed optode oxygen 15:27:16 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1002) 822 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:27:16 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 48: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.80% reduction 15:27:16 31 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.48 15:27:16 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:27:16 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:27:16 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 15:27:16 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 15:27:37 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 15:27:37 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 15:27:37 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 15:27:41 31 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:27:41 31 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:27:41 31 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:27:41 31 Mar 2016 UTC /home/sg146/p1460048.log /home/sg146/p1460048.eng /home/sg146/p1460048.asc /home/sg146/p1460048.pro /home/sg146/p1460048.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 15:27:41 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:27:41 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:27:41 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:27:41 31 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 15:27:41 31 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 15:27:41 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:27:41 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:27:41 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:27:41 31 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 15:27:41 31 Mar 2016 UTC 20:44:00 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19246 20:44:00 31 Mar 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:49:31 31 Mar 2016 UTC: INFO: BaseLog.py(77): Process id = 19398 20:49:31 31 Mar 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:49:31 31 Mar 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 20:49:31 31 Mar 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 20:49:31 31 Mar 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:49:31 31 Mar 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160331104930 ] 20:49:31 31 Mar 2016 UTC: INFO: Base.py(1333): PID:19406 20:49:31 31 Mar 2016 UTC: INFO: Base.py(1375): Started processing 20:49:31 31 Mar 2016 UTC 20:49:31 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 20:49:31 31 Mar 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 20:49:31 31 Mar 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 20:49:31 31 Mar 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 20:49:31 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:49:31 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(975): Sending GPS (dive:49 calls_made:5 call_cycle:0 2203.4670 -15654.5180 03/31/16 20:32:34 UTC) to sdrifter@soest.hawaii.edu 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:49:31 31 Mar 2016 UTC: INFO: CommLog.py(51): prefix:dive:49 calls_made:5 call_cycle:0 20:49:31 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:31 31 Mar 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:49:32 31 Mar 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:49:32 31 Mar 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:49:32 31 Mar 2016 UTC: INFO: Base.py(1577): No new selftests to processed 20:49:32 31 Mar 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:49:32 31 Mar 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:49:32 31 Mar 2016 UTC: INFO: Base.py(1602): Processing dive(s) 20:49:32 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 20:49:32 31 Mar 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 20:49:32 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0049lz 20:49:32 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0049lz.x01 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0049lz.1a.x00 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0049lz.b.1a.x01 20:49:32 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0049lz.r in process_file_group 20:49:32 31 Mar 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460049.log 20:49:32 31 Mar 2016 UTC: INFO: Base.py(265): fragment_size = 4096 20:49:32 31 Mar 2016 UTC: INFO: Base.py(368): Processing ./sg0049dz 20:49:32 31 Mar 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0049dz.x05 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.1a.x00 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.1a.x01 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.1a.x02 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.1a.x03 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0049dz.1a.x04 20:49:32 31 Mar 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0049dz.b.1a.x05 20:49:32 31 Mar 2016 UTC: INFO: Base.py(472): Processing ./sg0049dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 20:49:33 31 Mar 2016 UTC: INFO: Base.py(1622): Processed dive(s) [49] 20:49:33 31 Mar 2016 UTC: INFO: Base.py(1656): Dives to process = [49] 20:49:33 31 Mar 2016 UTC: INFO: Base.py(1719): Processing (./p1460049) for profiles 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 20:49:33 31 Mar 2016 UTC: INFO: QC.py(365): Changed (9/1050) 2:6 9 146 1048 1049 to QC_PROBABLY_BAD because raw temperature spikes 20:49:33 31 Mar 2016 UTC: INFO: QC.py(377): Changed (2/1050) 1049 1050 to QC_BAD because raw salinity below bound 20:49:33 31 Mar 2016 UTC: INFO: QC.py(388): Changed (1/1050) 1050 to QC_BAD because bad raw salinity indicates raw conductivity issues 20:49:33 31 Mar 2016 UTC: INFO: QC.py(408): Changed (5/1050) 3 138 146 577 1048 to QC_PROBABLY_BAD because raw conductivity spikes 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (8/1050) 2:6 9 146 1048 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1050) 138 577 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 20:49:33 31 Mar 2016 UTC: INFO: QC.py(365): Changed (9/1050) 2:6 9 146 1048 1049 to QC_INTERPOLATED because temperature spikes 20:49:33 31 Mar 2016 UTC: INFO: QC.py(377): Changed (2/1050) 1049 1050 to QC_BAD because salinity below bound 20:49:33 31 Mar 2016 UTC: INFO: QC.py(388): Changed (2/1050) 1049 1050 to QC_BAD because bad salinity indicates conductivity issues 20:49:33 31 Mar 2016 UTC: INFO: QC.py(408): Changed (4/1050) 3 138 146 577 to QC_INTERPOLATED because conductivity spikes 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1050) 517:522 to QC_BAD because slow apogee CT flow 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1050) 1:11 to QC_BAD because prior to dive start 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1050) 1:11 517:522 1049 1050 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1050) 1:11 517:522 1049 1050 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 20:49:33 31 Mar 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1050) 146 1048 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1050) 138 577 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (2/1050) 146 1048 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.25 cm/s 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.54 cm/s 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:49:33 31 Mar 2016 UTC: INFO: sbe43_ext.py(236): Changed (210/1050) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (9/1050) 2:6 9 146 1048 1049 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:49:33 31 Mar 2016 UTC: INFO: aa3830_ext.py(263): Changed (210/1050) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (9/1050) 2:6 9 146 1048 1049 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (19/1050) 1:11 517:522 1049 1050 to QC_BAD because changed salinity implies changed optode oxygen 20:49:33 31 Mar 2016 UTC: INFO: QC.py(180): Changed (1/1050) 138 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 20:49:33 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:49:33 31 Mar 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 20:49:34 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 49: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.81% reduction 20:49:34 31 Mar 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.49 20:49:34 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:49:34 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:49:34 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:49:34 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 20:49:34 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 20:49:56 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 20:49:56 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 20:49:56 31 Mar 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 20:49:59 31 Mar 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:49:59 31 Mar 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:49:59 31 Mar 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:49:59 31 Mar 2016 UTC /home/sg146/p1460049.log /home/sg146/p1460049.eng /home/sg146/p1460049.asc /home/sg146/p1460049.pro /home/sg146/p1460049.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 20:49:59 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:59 31 Mar 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:49:59 31 Mar 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:49:59 31 Mar 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 20:49:59 31 Mar 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 20:49:59 31 Mar 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:49:59 31 Mar 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:49:59 31 Mar 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:49:59 31 Mar 2016 UTC: INFO: Base.py(2265): Finished processing 20:49:59 31 Mar 2016 UTC 01:51:05 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27089 01:51:05 01 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 01:55:24 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27176 01:55:24 01 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 01:55:24 01 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 01:55:24 01 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 01:55:24 01 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 01:55:24 01 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160331155524 ] 01:55:24 01 Apr 2016 UTC: INFO: Base.py(1333): PID:27183 01:55:24 01 Apr 2016 UTC: INFO: Base.py(1375): Started processing 01:55:24 01 Apr 2016 UTC 01:55:24 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 01:55:24 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 01:55:24 01 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 01:55:25 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 01:55:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:50 calls_made:1 call_cycle:0 2203.1650 -15653.7580 04/01/16 01:48:59 UTC) to sdrifter@soest.hawaii.edu 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:55:25 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:50 calls_made:1 call_cycle:0 01:55:25 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 01:55:25 01 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 01:55:25 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 01:55:25 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 01:55:25 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0050lz 01:55:25 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0050lz.x01 01:55:25 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050lz.1a.x00 01:55:25 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0050lz.b.1a.x01 01:55:25 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0050lz.r in process_file_group 01:55:26 01 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460050.log 01:55:26 01 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 01:55:26 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0050dz 01:55:26 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.1a.x00 01:55:26 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.1a.x01 01:55:26 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.1a.x02 01:55:26 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.1a.x03 01:55:26 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.1a.x04 01:55:26 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0050dz.1a.x05 01:55:26 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0050dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 01:55:26 01 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [50] 01:55:26 01 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [50] 01:55:26 01 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460050) for profiles 01:55:26 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 01:55:26 01 Apr 2016 UTC: INFO: QC.py(365): Changed (8/1018) 2 3 7 9 558 833 834 1017 to QC_PROBABLY_BAD because raw temperature spikes 01:55:26 01 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1018) 1018 to QC_BAD because raw salinity below bound 01:55:26 01 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1018) 1018 to QC_BAD because bad raw salinity indicates raw conductivity issues 01:55:26 01 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1018) 3 497 558 833 834 876 to QC_PROBABLY_BAD because raw conductivity spikes 01:55:26 01 Apr 2016 UTC: INFO: QC.py(180): Changed (8/1018) 2 3 7 9 558 833 834 1017 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 01:55:26 01 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1018) 497 876 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 01:55:26 01 Apr 2016 UTC: INFO: QC.py(365): Changed (8/1018) 2 3 7 9 558 833 834 1017 to QC_INTERPOLATED because temperature spikes 01:55:26 01 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1018) 1018 to QC_BAD because salinity below bound 01:55:26 01 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1018) 1018 to QC_BAD because bad salinity indicates conductivity issues 01:55:26 01 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1018) 3 497 558 833 834 876 to QC_INTERPOLATED because conductivity spikes 01:55:26 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1018) 495:500 to QC_BAD because slow apogee CT flow 01:55:26 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1018) 1:11 to QC_BAD because prior to dive start 01:55:26 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1018) 1017 to QC_BAD because end of climb 01:55:26 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1018) 1:11 495:500 1017 1018 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 01:55:26 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1018) 1:11 495:500 1017 1018 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 01:55:27 01 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 01:55:27 01 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 50 interp_salinity data_points in_between 1012 1015 % suspect thermal-inertia points 1013 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1018) 558 833 834 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1018) 876 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1018) 558 833 834 to QC_INTERPOLATED because changed corrected temp implies changed speed 01:55:27 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.52 cm/s 01:55:27 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.41 cm/s 01:55:27 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 01:55:27 01 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1018) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1018) 2 3 7 9 833 834 1017 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 01:55:27 01 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/1018) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1018) 2 3 7 9 833 834 1017 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1018) 1:11 495:500 1017 1018 to QC_BAD because changed salinity implies changed optode oxygen 01:55:27 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1018) 876 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 01:55:27 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 01:55:27 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 01:55:27 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 50: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.87% reduction 01:55:27 01 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.50 01:55:27 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 01:55:27 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 01:55:27 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 01:55:28 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 01:55:28 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 01:55:50 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 01:55:50 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 01:55:50 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 01:55:54 01 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 01:55:54 01 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 01:55:54 01 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 01:55:54 01 Apr 2016 UTC /home/sg146/p1460050.log /home/sg146/p1460050.eng /home/sg146/p1460050.asc /home/sg146/p1460050.pro /home/sg146/p1460050.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 01:55:54 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:55:54 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 01:55:54 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 01:55:54 01 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 01:55:54 01 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 01:55:54 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 01:55:54 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 01:55:54 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 01:55:54 01 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 01:55:54 01 Apr 2016 UTC 07:05:17 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2771 07:05:18 01 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:09:55 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2899 07:09:55 01 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:09:55 01 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 07:09:55 01 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 07:09:55 01 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:09:55 01 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160331210954 ] 07:09:55 01 Apr 2016 UTC: INFO: Base.py(1333): PID:2906 07:09:55 01 Apr 2016 UTC: INFO: Base.py(1375): Started processing 07:09:55 01 Apr 2016 UTC 07:09:55 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 07:09:55 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 07:09:55 01 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 07:09:55 01 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 07:09:55 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:09:55 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:51 calls_made:1 call_cycle:0 2203.2960 -15652.1140 04/01/16 07:03:05 UTC) to sdrifter@soest.hawaii.edu 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:09:55 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:51 calls_made:1 call_cycle:0 07:09:55 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:09:55 01 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 07:09:56 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 07:09:56 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 07:09:56 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0051lz 07:09:56 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0051lz.x01 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0051lz.1a.x00 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0051lz.b.1a.x01 07:09:56 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0051lz.r in process_file_group 07:09:56 01 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460051.log 07:09:56 01 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 07:09:56 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0051dz 07:09:56 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0051dz.x05 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.1a.x00 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.1a.x01 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.1a.x02 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.1a.x03 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0051dz.1a.x04 07:09:56 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0051dz.b.1a.x05 07:09:56 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0051dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [51] 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [51] 07:09:56 01 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460051) for profiles 07:09:56 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 07:09:57 01 Apr 2016 UTC: INFO: QC.py(365): Changed (6/1038) 2 4:6 442 1037 to QC_PROBABLY_BAD because raw temperature spikes 07:09:57 01 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1038) 1037 to QC_BAD because raw salinity below bound 07:09:57 01 Apr 2016 UTC: INFO: QC.py(408): Changed (3/1038) 2 5 1037 to QC_PROBABLY_BAD because raw conductivity spikes 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1038) 1038 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1038) 2 4:6 442 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1038) 1038 to QC_BAD because changed raw cond implies changed raw salinity 07:09:57 01 Apr 2016 UTC: INFO: QC.py(365): Changed (6/1038) 2 4:6 442 1037 to QC_INTERPOLATED because temperature spikes 07:09:57 01 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1038) 1037 to QC_BAD because salinity below bound 07:09:57 01 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1038) 1037 to QC_BAD because bad salinity indicates conductivity issues 07:09:57 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1038) 2 5 to QC_INTERPOLATED because conductivity spikes 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1038) 1038 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1038) 500:505 to QC_BAD because slow apogee CT flow 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1038) 1:10 to QC_BAD because prior to dive start 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1038) 1036 to QC_BAD because end of climb 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1038) 1:10 500:505 1036:1038 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1038) 1:10 500:505 1036:1038 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 07:09:57 01 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1038) 442 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1038) 442 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.94 cm/s 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.52 cm/s 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:09:57 01 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (216/1038) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1038) 2 4:6 1037 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:09:57 01 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (216/1038) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1038) 2 4:6 1037 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:09:57 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1038) 1:10 500:505 1036:1038 to QC_BAD because changed salinity implies changed optode oxygen 07:09:57 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:09:57 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 07:09:58 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 51: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.83% reduction 07:09:58 01 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.51 07:09:58 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:09:58 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:09:58 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:09:58 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 07:09:58 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 07:10:21 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 07:10:21 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 07:10:21 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 07:10:25 01 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:10:25 01 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:10:25 01 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:10:25 01 Apr 2016 UTC /home/sg146/p1460051.log /home/sg146/p1460051.eng /home/sg146/p1460051.asc /home/sg146/p1460051.pro /home/sg146/p1460051.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 07:10:25 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:10:25 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:10:25 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:10:25 01 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 07:10:25 01 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 07:10:25 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:10:25 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:10:25 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:10:25 01 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 07:10:25 01 Apr 2016 UTC 12:14:05 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 10761 12:14:05 01 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:19:41 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 10909 12:19:41 01 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:19:41 01 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 12:19:41 01 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 12:19:41 01 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:19:41 01 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160401021940 ] 12:19:41 01 Apr 2016 UTC: INFO: Base.py(1333): PID:10916 12:19:41 01 Apr 2016 UTC: INFO: Base.py(1375): Started processing 12:19:41 01 Apr 2016 UTC 12:19:41 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 12:19:41 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 12:19:41 01 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 12:19:41 01 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 12:19:41 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:19:41 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:52 calls_made:1 call_cycle:0 2203.5730 -15650.7410 04/01/16 12:11:58 UTC) to sdrifter@soest.hawaii.edu 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:19:41 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:52 calls_made:1 call_cycle:0 12:19:41 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:19:41 01 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:19:42 01 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:19:42 01 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:19:42 01 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 12:19:42 01 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:19:42 01 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:19:42 01 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 12:19:42 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 12:19:42 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 12:19:42 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0052lz 12:19:42 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0052lz.x01 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0052lz.1a.x00 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0052lz.b.1a.x01 12:19:42 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0052lz.r in process_file_group 12:19:42 01 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460052.log 12:19:42 01 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 12:19:42 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0052dz 12:19:42 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0052dz.x05 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.1a.x00 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.1a.x01 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.1a.x02 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.1a.x03 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0052dz.1a.x04 12:19:42 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0052dz.b.1a.x05 12:19:42 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0052dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 12:19:43 01 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [52] 12:19:43 01 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [52] 12:19:43 01 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460052) for profiles 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 12:19:43 01 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1036) 2 3 5 7 to QC_PROBABLY_BAD because raw temperature spikes 12:19:43 01 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1036) 1036 to QC_BAD because raw salinity below bound 12:19:43 01 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1036) 1036 to QC_BAD because bad raw salinity indicates raw conductivity issues 12:19:43 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1036) 7 136 to QC_PROBABLY_BAD because raw conductivity spikes 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1036) 1035 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 12:19:43 01 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1036) 2 3 5 7 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:19:43 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1036) 136 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:19:43 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1036) 1035 to QC_BAD because changed raw cond implies changed raw salinity 12:19:43 01 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1036) 2 3 5 7 to QC_INTERPOLATED because temperature spikes 12:19:43 01 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1036) 1036 to QC_BAD because salinity below bound 12:19:43 01 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1036) 1036 to QC_BAD because bad salinity indicates conductivity issues 12:19:43 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1036) 7 136 to QC_INTERPOLATED because conductivity spikes 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1036) 1035 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1036) 506:511 to QC_BAD because slow apogee CT flow 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1036) 1:10 to QC_BAD because prior to dive start 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1036) 1033 1034 to QC_BAD because end of climb 12:19:43 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1036) 1:10 506:511 1033:1036 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:19:43 01 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1036) 1:10 506:511 1033:1036 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 12:19:44 01 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:19:44 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1036) 136 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.78 cm/s 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.21 cm/s 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:19:44 01 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1036) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:19:44 01 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1036) 2 3 5 7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:19:44 01 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/1036) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 12:19:44 01 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1036) 2 3 5 7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:19:44 01 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1036) 1:10 506:511 1033:1036 to QC_BAD because changed salinity implies changed optode oxygen 12:19:44 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1036) 136 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:19:44 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 52: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.93% reduction 12:19:44 01 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.52 12:19:44 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:19:44 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:19:44 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 12:19:44 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 12:20:07 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 12:20:08 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 12:20:08 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 12:20:12 01 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:20:12 01 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:20:12 01 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:20:12 01 Apr 2016 UTC /home/sg146/p1460052.log /home/sg146/p1460052.eng /home/sg146/p1460052.asc /home/sg146/p1460052.pro /home/sg146/p1460052.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 12:20:12 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:20:12 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:20:12 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:20:12 01 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 12:20:12 01 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 12:20:12 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:20:12 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:20:12 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:20:12 01 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 12:20:12 01 Apr 2016 UTC 17:25:28 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 19006 17:25:28 01 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:30:28 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 19210 17:30:28 01 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:30:28 01 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 17:30:28 01 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 17:30:28 01 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:30:28 01 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160401073027 ] 17:30:28 01 Apr 2016 UTC: INFO: Base.py(1333): PID:19219 17:30:28 01 Apr 2016 UTC: INFO: Base.py(1375): Started processing 17:30:28 01 Apr 2016 UTC 17:30:28 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 17:30:28 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 17:30:28 01 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 17:30:28 01 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 17:30:28 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:30:28 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:53 calls_made:4 call_cycle:0 2203.9610 -15648.8960 04/01/16 17:15:59 UTC) to sdrifter@soest.hawaii.edu 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:30:28 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:53 calls_made:4 call_cycle:0 17:30:28 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:28 01 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:30:29 01 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:30:29 01 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:30:29 01 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 17:30:29 01 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:30:29 01 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:30:29 01 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 17:30:29 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 17:30:29 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 17:30:29 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0053lz 17:30:29 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0053lz.x01 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0053lz.1a.x00 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0053lz.b.1a.x01 17:30:29 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0053lz.r in process_file_group 17:30:29 01 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460053.log 17:30:29 01 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 17:30:29 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0053dz 17:30:29 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0053dz.x05 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.1a.x00 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.1a.x01 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.1a.x02 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.1a.x03 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0053dz.1a.x04 17:30:29 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0053dz.b.1a.x05 17:30:29 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0053dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 17:30:30 01 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [53] 17:30:30 01 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [53] 17:30:30 01 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460053) for profiles 17:30:30 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 17:30:30 01 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1003) 2 4 8 1002 to QC_PROBABLY_BAD because raw temperature spikes 17:30:30 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1003) 3 1002 to QC_PROBABLY_BAD because raw conductivity spikes 17:30:30 01 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1003) 2 4 8 1002 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:30:30 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1003) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 17:30:30 01 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1003) 2 4 8 1002 to QC_INTERPOLATED because temperature spikes 17:30:30 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1003) 3 1002 to QC_INTERPOLATED because conductivity spikes 17:30:30 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1003) 486:491 to QC_BAD because slow apogee CT flow 17:30:30 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1003) 1:10 to QC_BAD because prior to dive start 17:30:30 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/1003) 1001:1003 to QC_BAD because end of climb 17:30:30 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1003) 1:10 486:491 1001:1003 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:30:30 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1003) 1:10 486:491 1001:1003 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 17:30:31 01 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.11 cm/s 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.34 cm/s 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:30:31 01 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1003) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:30:31 01 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1003) 2 4 8 1002 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:30:31 01 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/1003) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 17:30:31 01 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1003) 2 4 8 1002 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:30:31 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1003) 1:10 486:491 1001:1003 to QC_BAD because changed salinity implies changed optode oxygen 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:30:31 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 53: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.89% reduction 17:30:31 01 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.53 17:30:31 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:30:31 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:30:31 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 17:30:31 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 17:30:55 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 17:30:55 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 17:30:55 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 17:30:59 01 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:30:59 01 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:30:59 01 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:30:59 01 Apr 2016 UTC /home/sg146/p1460053.log /home/sg146/p1460053.eng /home/sg146/p1460053.asc /home/sg146/p1460053.pro /home/sg146/p1460053.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 17:30:59 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:59 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:30:59 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:30:59 01 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 17:30:59 01 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 17:30:59 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:30:59 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:30:59 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:30:59 01 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 17:30:59 01 Apr 2016 UTC 22:37:19 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27231 22:37:19 01 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:43:30 01 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27492 22:43:30 01 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:43:30 01 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:43:30 01 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:43:30 01 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:43:30 01 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160401124330 ] 22:43:30 01 Apr 2016 UTC: INFO: Base.py(1333): PID:27499 22:43:30 01 Apr 2016 UTC: INFO: Base.py(1375): Started processing 22:43:30 01 Apr 2016 UTC 22:43:30 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:43:30 01 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:43:30 01 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 22:43:31 01 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:43:31 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:43:31 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:54 calls_made:2 call_cycle:0 2204.1280 -15646.9820 04/01/16 22:33:05 UTC) to sdrifter@soest.hawaii.edu 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:43:31 01 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:54 calls_made:2 call_cycle:0 22:43:31 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:43:31 01 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:43:31 01 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:43:32 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 22:43:32 01 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 22:43:32 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0054lz 22:43:32 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0054lz.x01 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0054lz.1a.x00 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0054lz.b.1a.x01 22:43:32 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0054lz.r in process_file_group 22:43:32 01 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460054.log 22:43:32 01 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 22:43:32 01 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0054dz 22:43:32 01 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0054dz.x05 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.1a.x00 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.1a.x01 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.1a.x02 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.1a.x03 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0054dz.1a.x04 22:43:32 01 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0054dz.b.1a.x05 22:43:32 01 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0054dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [54] 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [54] 22:43:32 01 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460054) for profiles 22:43:32 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 22:43:32 01 Apr 2016 UTC: INFO: QC.py(365): Changed (2/1034) 4 8 to QC_PROBABLY_BAD because raw temperature spikes 22:43:32 01 Apr 2016 UTC: INFO: QC.py(377): Changed (2/1034) 1033 1034 to QC_BAD because raw salinity below bound 22:43:32 01 Apr 2016 UTC: INFO: QC.py(388): Changed (2/1034) 1033 1034 to QC_BAD because bad raw salinity indicates raw conductivity issues 22:43:32 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1034) 2 582 to QC_PROBABLY_BAD because raw conductivity spikes 22:43:32 01 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1034) 4 8 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:43:32 01 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1034) 2 582 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:43:32 01 Apr 2016 UTC: INFO: QC.py(365): Changed (2/1034) 4 8 to QC_INTERPOLATED because temperature spikes 22:43:32 01 Apr 2016 UTC: INFO: QC.py(377): Changed (2/1034) 1033 1034 to QC_BAD because salinity below bound 22:43:32 01 Apr 2016 UTC: INFO: QC.py(388): Changed (2/1034) 1033 1034 to QC_BAD because bad salinity indicates conductivity issues 22:43:32 01 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1034) 2 582 to QC_INTERPOLATED because conductivity spikes 22:43:32 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1034) 498:503 to QC_BAD because slow apogee CT flow 22:43:32 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1034) 1:10 to QC_BAD because prior to dive start 22:43:32 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1034) 1032 to QC_BAD because end of climb 22:43:32 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1034) 1:10 498:503 1032:1034 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:43:32 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1034) 1:10 498:503 1032:1034 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 22:43:33 01 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:43:33 01 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1034) 582 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:43:33 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.50 cm/s 22:43:33 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.42 cm/s 22:43:33 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:43:33 01 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (209/1034) 365 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:43:33 01 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1034) 4 8 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:43:33 01 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (209/1034) 365 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 22:43:33 01 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1034) 4 8 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:43:33 01 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1034) 1:10 498:503 1032:1034 to QC_BAD because changed salinity implies changed optode oxygen 22:43:33 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:43:33 01 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 22:43:34 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 54: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.84% reduction 22:43:34 01 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.54 22:43:34 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:43:34 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:43:34 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:43:34 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 22:43:34 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 22:43:58 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 22:43:58 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 22:43:58 01 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 22:44:02 01 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:44:02 01 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:44:02 01 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:44:02 01 Apr 2016 UTC /home/sg146/p1460054.log /home/sg146/p1460054.eng /home/sg146/p1460054.asc /home/sg146/p1460054.pro /home/sg146/p1460054.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 22:44:02 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:44:02 01 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:44:02 01 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:44:02 01 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:44:02 01 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:44:02 01 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:44:02 01 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:44:02 01 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:44:02 01 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 22:44:02 01 Apr 2016 UTC 03:42:01 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 3799 03:42:01 02 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 03:47:07 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4011 03:47:07 02 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 03:47:07 02 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 03:47:07 02 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 03:47:07 02 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 03:47:07 02 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160401174706 ] 03:47:07 02 Apr 2016 UTC: INFO: Base.py(1333): PID:4018 03:47:07 02 Apr 2016 UTC: INFO: Base.py(1375): Started processing 03:47:07 02 Apr 2016 UTC 03:47:07 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 03:47:07 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 03:47:07 02 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 03:47:07 02 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 03:47:07 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:55 calls_made:1 call_cycle:0 2203.9030 -15645.4260 04/02/16 03:39:58 UTC) to sdrifter@soest.hawaii.edu 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:47:07 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:55 calls_made:1 call_cycle:0 03:47:07 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:47:07 02 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 03:47:08 02 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 03:47:08 02 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 03:47:08 02 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 03:47:08 02 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 03:47:08 02 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 03:47:08 02 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 03:47:08 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 03:47:08 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 03:47:08 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0055lz 03:47:08 02 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0055lz.x01 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0055lz.1a.x00 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0055lz.b.1a.x01 03:47:08 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0055lz.r in process_file_group 03:47:08 02 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460055.log 03:47:08 02 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 03:47:08 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0055dz 03:47:08 02 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0055dz.x05 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.1a.x00 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.1a.x01 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.1a.x02 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.1a.x03 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0055dz.1a.x04 03:47:08 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0055dz.b.1a.x05 03:47:08 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0055dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 03:47:09 02 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [55] 03:47:09 02 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [55] 03:47:09 02 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460055) for profiles 03:47:09 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 03:47:09 02 Apr 2016 UTC: INFO: QC.py(365): Changed (12/1019) 2:8 10 164 165 498 861 to QC_PROBABLY_BAD because raw temperature spikes 03:47:09 02 Apr 2016 UTC: INFO: QC.py(408): Changed (4/1019) 4 164 165 861 to QC_PROBABLY_BAD because raw conductivity spikes 03:47:09 02 Apr 2016 UTC: INFO: QC.py(180): Changed (12/1019) 2:8 10 164 165 498 861 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 03:47:09 02 Apr 2016 UTC: INFO: QC.py(365): Changed (12/1019) 2:8 10 164 165 498 861 to QC_INTERPOLATED because temperature spikes 03:47:09 02 Apr 2016 UTC: INFO: QC.py(408): Changed (4/1019) 4 164 165 861 to QC_INTERPOLATED because conductivity spikes 03:47:09 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1019) 496:501 to QC_BAD because slow apogee CT flow 03:47:09 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1019) 1:10 to QC_BAD because prior to dive start 03:47:09 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1019) 1018 1019 to QC_BAD because end of climb 03:47:09 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1019) 1:10 496:501 1018 1019 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 03:47:09 02 Apr 2016 UTC: INFO: QC.py(180): Changed (18/1019) 1:10 496:501 1018 1019 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 03:47:10 02 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 03:47:10 02 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1019) 164 165 861 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 03:47:10 02 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1019) 164 165 861 to QC_INTERPOLATED because changed corrected temp implies changed speed 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.12 cm/s 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.07 cm/s 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 03:47:10 02 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (204/1019) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 03:47:10 02 Apr 2016 UTC: INFO: QC.py(180): Changed (11/1019) 2:8 10 164 165 861 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 03:47:10 02 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (204/1019) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 03:47:10 02 Apr 2016 UTC: INFO: QC.py(180): Changed (11/1019) 2:8 10 164 165 861 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 03:47:10 02 Apr 2016 UTC: INFO: QC.py(180): Changed (18/1019) 1:10 496:501 1018 1019 to QC_BAD because changed salinity implies changed optode oxygen 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 03:47:10 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 55: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.77% reduction 03:47:10 02 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.55 03:47:10 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 03:47:10 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 03:47:10 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 03:47:10 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 03:47:35 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 03:47:36 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 03:47:36 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 03:47:40 02 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:47:40 02 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:47:40 02 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:47:40 02 Apr 2016 UTC /home/sg146/p1460055.log /home/sg146/p1460055.eng /home/sg146/p1460055.asc /home/sg146/p1460055.pro /home/sg146/p1460055.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 03:47:40 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:47:40 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:47:40 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:47:40 02 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:47:40 02 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:47:40 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:47:40 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:47:40 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:47:40 02 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 03:47:40 02 Apr 2016 UTC 08:52:40 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11818 08:52:40 02 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:57:20 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11948 08:57:20 02 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:57:20 02 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 08:57:20 02 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 08:57:20 02 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:57:20 02 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160401225719 ] 08:57:20 02 Apr 2016 UTC: INFO: Base.py(1333): PID:11963 08:57:20 02 Apr 2016 UTC: INFO: Base.py(1375): Started processing 08:57:20 02 Apr 2016 UTC 08:57:20 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 08:57:20 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 08:57:20 02 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 08:57:20 02 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 08:57:20 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:56 calls_made:1 call_cycle:0 2204.2100 -15643.5560 04/02/16 08:50:24 UTC) to sdrifter@soest.hawaii.edu 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:57:20 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:56 calls_made:1 call_cycle:0 08:57:20 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:57:20 02 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:57:21 02 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:57:21 02 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:57:21 02 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 08:57:21 02 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:57:21 02 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:57:21 02 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 08:57:21 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 08:57:21 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 08:57:21 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0056lz 08:57:21 02 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0056lz.x01 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0056lz.1a.x00 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0056lz.b.1a.x01 08:57:21 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0056lz.r in process_file_group 08:57:21 02 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460056.log 08:57:21 02 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 08:57:21 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0056dz 08:57:21 02 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0056dz.x05 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.1a.x00 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.1a.x01 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.1a.x02 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.1a.x03 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0056dz.1a.x04 08:57:21 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0056dz.b.1a.x05 08:57:21 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0056dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 08:57:22 02 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [56] 08:57:22 02 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [56] 08:57:22 02 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460056) for profiles 08:57:22 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 08:57:22 02 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1040) 4 5 9 1039 to QC_PROBABLY_BAD because raw temperature spikes 08:57:22 02 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1040) 1039 to QC_BAD because raw salinity below bound 08:57:22 02 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1040) 1039 to QC_PROBABLY_BAD because raw conductivity spikes 08:57:22 02 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1040) 4 5 9 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:57:22 02 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1040) 4 5 9 1039 to QC_INTERPOLATED because temperature spikes 08:57:22 02 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1040) 1039 to QC_BAD because salinity below bound 08:57:22 02 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1040) 1039 to QC_BAD because bad salinity indicates conductivity issues 08:57:22 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1040) 508:513 to QC_BAD because slow apogee CT flow 08:57:22 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1040) 1:10 to QC_BAD because prior to dive start 08:57:22 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1040) 1038 1040 to QC_BAD because end of climb 08:57:22 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1040) 1:10 508:513 1038:1040 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:57:22 02 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1040) 1:10 508:513 1038:1040 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 08:57:23 02 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.02 cm/s 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.36 cm/s 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:57:23 02 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1040) 374 375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:57:23 02 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1040) 4 5 9 1039 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:57:23 02 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/1040) 374 375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 08:57:23 02 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1040) 4 5 9 1039 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:57:23 02 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1040) 1:10 508:513 1038:1040 to QC_BAD because changed salinity implies changed optode oxygen 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:57:23 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 56: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.83% reduction 08:57:23 02 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.56 08:57:23 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:57:23 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:57:23 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 08:57:23 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 08:57:49 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 08:57:49 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 08:57:49 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 08:57:53 02 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:57:53 02 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:57:53 02 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:57:53 02 Apr 2016 UTC /home/sg146/p1460056.log /home/sg146/p1460056.eng /home/sg146/p1460056.asc /home/sg146/p1460056.pro /home/sg146/p1460056.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 08:57:53 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:57:53 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:57:53 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:57:53 02 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 08:57:53 02 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 08:57:53 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:57:53 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:57:53 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:57:53 02 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 08:57:53 02 Apr 2016 UTC 14:00:39 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20049 14:00:39 02 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:06:50 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20279 14:06:50 02 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:06:50 02 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:06:50 02 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:06:50 02 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:06:50 02 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160402040649 ] 14:06:50 02 Apr 2016 UTC: INFO: Base.py(1333): PID:20286 14:06:50 02 Apr 2016 UTC: INFO: Base.py(1375): Started processing 14:06:50 02 Apr 2016 UTC 14:06:50 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:06:50 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:06:50 02 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:06:50 02 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:06:50 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:57 calls_made:1 call_cycle:0 2204.3370 -15641.7390 04/02/16 13:58:34 UTC) to sdrifter@soest.hawaii.edu 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:06:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:57 calls_made:1 call_cycle:0 14:06:50 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:06:50 02 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:06:51 02 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:06:51 02 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:06:51 02 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:06:51 02 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:06:51 02 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:06:51 02 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:06:51 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 14:06:51 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 14:06:51 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0057lz 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057lz.1a.x00 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057lz.1a.x01 14:06:51 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0057lz.r in process_file_group 14:06:51 02 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460057.log 14:06:51 02 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:06:51 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0057dz 14:06:51 02 Apr 2016 UTC: INFO: Bogue.py(156): Eliminated duplicate data at 3200 to 896 in /home/sg146/sg0057dz.x00 14:06:51 02 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0057dz.x00 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0057dz.b.1a.x00 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.1a.x01 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.1a.x02 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.1a.x03 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.1a.x04 14:06:51 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0057dz.1a.x05 14:06:51 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0057dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 14:06:52 02 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [57] 14:06:52 02 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [57] 14:06:52 02 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460057) for profiles 14:06:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 14:06:52 02 Apr 2016 UTC: INFO: QC.py(365): Changed (5/1022) 2 4 6 9 34 to QC_PROBABLY_BAD because raw temperature spikes 14:06:52 02 Apr 2016 UTC: INFO: QC.py(408): Changed (3/1022) 3 34 1021 to QC_PROBABLY_BAD because raw conductivity spikes 14:06:52 02 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1022) 2 4 6 9 34 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:06:52 02 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1022) 3 1021 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:06:52 02 Apr 2016 UTC: INFO: QC.py(365): Changed (5/1022) 2 4 6 9 34 to QC_INTERPOLATED because temperature spikes 14:06:52 02 Apr 2016 UTC: INFO: QC.py(408): Changed (3/1022) 3 34 1021 to QC_INTERPOLATED because conductivity spikes 14:06:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1022) 499:504 to QC_BAD because slow apogee CT flow 14:06:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1022) 1:10 to QC_BAD because prior to dive start 14:06:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/1022) 1020:1022 to QC_BAD because end of climb 14:06:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1022) 1:10 499:504 1020:1022 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:06:52 02 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1022) 1:10 499:504 1020:1022 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 14:06:53 02 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:06:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1022) 34 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:06:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1022) 34 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.97 cm/s 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.36 cm/s 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:06:53 02 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (211/1022) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:06:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1022) 2 4 6 9 34 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:06:53 02 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (211/1022) 367:370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 14:06:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1022) 2 4 6 9 34 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:06:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1022) 1:10 499:504 1020:1022 to QC_BAD because changed salinity implies changed optode oxygen 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:06:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 57: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.86% reduction 14:06:53 02 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.57 14:06:53 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:06:53 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:06:53 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 14:06:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 14:07:20 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 14:07:20 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 14:07:20 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 14:07:24 02 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:07:24 02 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:07:24 02 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:07:24 02 Apr 2016 UTC /home/sg146/p1460057.log /home/sg146/p1460057.eng /home/sg146/p1460057.asc /home/sg146/p1460057.pro /home/sg146/p1460057.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 14:07:24 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:07:24 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:07:24 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:07:24 02 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:07:24 02 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:07:24 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:07:24 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:07:24 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:07:24 02 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 14:07:24 02 Apr 2016 UTC 19:12:51 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27919 19:12:51 02 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:14:04 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27992 19:14:04 02 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:14:04 02 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 19:14:04 02 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 19:14:04 02 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:14:04 02 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160402091403 ] 19:14:04 02 Apr 2016 UTC: INFO: Base.py(1333): PID:28000 19:14:04 02 Apr 2016 UTC: INFO: Base.py(1375): Started processing 19:14:04 02 Apr 2016 UTC 19:14:04 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 19:14:04 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 19:14:04 02 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 19:14:04 02 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 19:14:04 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:58 calls_made:2 call_cycle:0 2204.5630 -15639.6290 04/02/16 19:07:58 UTC) to sdrifter@soest.hawaii.edu 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:14:04 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:2 call_cycle:0 19:14:04 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:14:04 02 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 19:14:05 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 19:14:05 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 19:14:05 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0058lz 19:14:05 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058lz.x00.PARTIAL.1a.1 19:14:05 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0058lz.r in process_file_group 19:14:05 02 Apr 2016 UTC: ERROR: BaseGZip.py(125): ./sg0058lz.r not a gzipped file 19:14:05 02 Apr 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0058lz.r - skipping 19:14:05 02 Apr 2016 UTC: ERROR: Base.py(243): Could not process sg0058lz - skipping 19:14:05 02 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 19:14:05 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0058lz 19:14:05 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058lz.x00.PARTIAL.1a.1 19:14:05 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0058lz.r in process_file_group 19:14:05 02 Apr 2016 UTC: ERROR: BaseGZip.py(125): ./sg0058lz.r not a gzipped file 19:14:05 02 Apr 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0058lz.r - skipping 19:14:05 02 Apr 2016 UTC: ERROR: Base.py(272): Could not process sg0058lz - skipping 19:14:05 02 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [] 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.58 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:14:05 02 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:14:05 02 Apr 2016 UTC: ERROR: Base.py(1960): Dive [58] failed to process completely. The following files were not processed completely: /home/sg146/sg0058lz.r File ./sg0058lz.x00.PARTIAL.1 is a PARTIAL file - consider resend_dive /l 58 00 Glider logout not seen - retransmissions from glider possible Consult baselog_160402091403 for details. 19:14:05 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:14:05 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:14:05 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:14:06 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:14:06 02 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 19:14:06 02 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 19:14:06 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:14:06 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:14:06 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:14:06 02 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 19:14:06 02 Apr 2016 UTC 19:18:45 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28226 19:18:45 02 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:24:50 02 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28439 19:24:50 02 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:24:50 02 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 19:24:50 02 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 19:24:50 02 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:24:50 02 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160402092449 ] 19:24:50 02 Apr 2016 UTC: INFO: Base.py(1333): PID:28446 19:24:50 02 Apr 2016 UTC: INFO: Base.py(1375): Started processing 19:24:50 02 Apr 2016 UTC 19:24:50 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 19:24:50 02 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 19:24:50 02 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 19:24:50 02 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 19:24:50 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:24:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:24:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:24:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:50 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:24:50 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:50 02 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:58 calls_made:4 call_cycle:0 2204.5630 -15639.6290 04/02/16 19:07:58 UTC) to sdrifter@soest.hawaii.edu 19:24:51 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:51 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:24:51 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:51 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:24:51 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:51 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:24:51 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:51 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:24:51 02 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:58 calls_made:4 call_cycle:0 19:24:51 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:24:51 02 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 19:24:52 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 19:24:52 02 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 19:24:52 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0058lz 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058lz.1a.x00 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058lz.1a.x01 19:24:52 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0058lz.r in process_file_group 19:24:52 02 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460058.log 19:24:52 02 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 19:24:52 02 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0058dz 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.1a.x00 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.1a.x01 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.1a.x02 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.1a.x03 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.1a.x04 19:24:52 02 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0058dz.1a.x05 19:24:52 02 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0058dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 19:24:52 02 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [58] 19:24:52 02 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [58] 19:24:52 02 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460058) for profiles 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 19:24:52 02 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1025) 2 3 6 7 to QC_PROBABLY_BAD because raw temperature spikes 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1025) 1025 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 19:24:52 02 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1025) 2 3 6 7 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:24:52 02 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1025) 1025 to QC_BAD because changed raw cond implies changed raw salinity 19:24:52 02 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1025) 2 3 6 7 to QC_INTERPOLATED because temperature spikes 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1025) 1025 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1025) 500:505 to QC_BAD because slow apogee CT flow 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1025) 1:10 to QC_BAD because prior to dive start 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1025) 1024 to QC_BAD because end of climb 19:24:52 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/1025) 1:10 500:505 1024 1025 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:24:52 02 Apr 2016 UTC: INFO: QC.py(180): Changed (18/1025) 1:10 500:505 1024 1025 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 19:24:53 02 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:24:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.57 cm/s 19:24:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 19:24:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:24:53 02 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (211/1025) 363:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:24:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1025) 2 3 6 7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:24:53 02 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (211/1025) 363:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 19:24:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1025) 2 3 6 7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:24:53 02 Apr 2016 UTC: INFO: QC.py(180): Changed (18/1025) 1:10 500:505 1024 1025 to QC_BAD because changed salinity implies changed optode oxygen 19:24:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:24:53 02 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 19:24:53 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 58: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.76% reduction 19:24:54 02 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.58 19:24:54 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:24:54 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:24:54 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:24:54 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 19:24:54 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 19:25:20 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 19:25:21 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 19:25:21 02 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 19:25:25 02 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:25:25 02 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:25:25 02 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:25:25 02 Apr 2016 UTC /home/sg146/p1460058.log /home/sg146/p1460058.eng /home/sg146/p1460058.asc /home/sg146/p1460058.pro /home/sg146/p1460058.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 19:25:25 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:25:25 02 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:25:25 02 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:25:25 02 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 19:25:25 02 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 19:25:25 02 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:25:25 02 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:25:25 02 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:25:25 02 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 19:25:25 02 Apr 2016 UTC 00:29:15 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 3959 00:29:15 03 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:34:08 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4118 00:34:08 03 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:34:08 03 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:34:08 03 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:34:08 03 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:34:08 03 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160402143408 ] 00:34:08 03 Apr 2016 UTC: INFO: Base.py(1333): PID:4126 00:34:08 03 Apr 2016 UTC: INFO: Base.py(1375): Started processing 00:34:08 03 Apr 2016 UTC 00:34:08 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:34:08 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:34:08 03 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:34:09 03 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:34:09 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:59 calls_made:1 call_cycle:0 2204.7860 -15637.4740 04/03/16 00:27:05 UTC) to sdrifter@soest.hawaii.edu 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:34:09 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:59 calls_made:1 call_cycle:0 00:34:09 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:09 03 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:34:10 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 00:34:10 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 00:34:10 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0059lz 00:34:10 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0059lz.x01 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0059lz.1a.x00 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0059lz.b.1a.x01 00:34:10 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0059lz.r in process_file_group 00:34:10 03 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460059.log 00:34:10 03 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:34:10 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0059dz 00:34:10 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0059dz.x05 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.1a.x00 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.1a.x01 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.1a.x02 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.1a.x03 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0059dz.1a.x04 00:34:10 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0059dz.b.1a.x05 00:34:10 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0059dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [59] 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [59] 00:34:10 03 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460059) for profiles 00:34:10 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 00:34:11 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1035) 2 7 514 1034 to QC_PROBABLY_BAD because raw temperature spikes 00:34:11 03 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1035) 3 1034 to QC_PROBABLY_BAD because raw conductivity spikes 00:34:11 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1035) 2 7 514 1034 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:34:11 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1035) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:34:11 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1035) 2 7 514 1034 to QC_INTERPOLATED because temperature spikes 00:34:11 03 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1035) 3 1034 to QC_INTERPOLATED because conductivity spikes 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1035) 512:517 to QC_BAD because slow apogee CT flow 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1035) 1:11 to QC_BAD because prior to dive start 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/1035) 1033:1035 to QC_BAD because end of climb 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1035) 1:11 512:517 1033:1035 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:34:11 03 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1035) 1:11 512:517 1033:1035 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 00:34:11 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.32 cm/s 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.44 cm/s 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:34:11 03 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (210/1035) 374 375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:34:11 03 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1035) 2 7 1034 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:34:11 03 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (210/1035) 374 375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:34:11 03 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1035) 2 7 1034 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:34:11 03 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1035) 1:11 512:517 1033:1035 to QC_BAD because changed salinity implies changed optode oxygen 00:34:11 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:34:11 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 00:34:12 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 59: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.93% reduction 00:34:12 03 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.59 00:34:12 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:34:12 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:34:12 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:34:12 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 00:34:12 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 00:34:39 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 00:34:40 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 00:34:40 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 00:34:44 03 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:34:44 03 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:34:44 03 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:34:44 03 Apr 2016 UTC /home/sg146/p1460059.log /home/sg146/p1460059.eng /home/sg146/p1460059.asc /home/sg146/p1460059.pro /home/sg146/p1460059.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 00:34:44 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:44 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:34:44 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:34:44 03 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:34:44 03 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:34:44 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:34:44 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:34:44 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:34:44 03 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 00:34:44 03 Apr 2016 UTC 05:39:34 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11733 05:39:34 03 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 05:45:14 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11918 05:45:14 03 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 05:45:14 03 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 05:45:14 03 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 05:45:14 03 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 05:45:14 03 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160402194513 ] 05:45:14 03 Apr 2016 UTC: INFO: Base.py(1333): PID:11925 05:45:14 03 Apr 2016 UTC: INFO: Base.py(1375): Started processing 05:45:14 03 Apr 2016 UTC 05:45:14 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 05:45:14 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 05:45:14 03 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 05:45:14 03 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 05:45:14 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:60 calls_made:3 call_cycle:0 2205.1980 -15635.1840 04/03/16 05:34:05 UTC) to sdrifter@soest.hawaii.edu 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:45:14 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:60 calls_made:3 call_cycle:0 05:45:14 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:45:14 03 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 05:45:15 03 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 05:45:15 03 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 05:45:15 03 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 05:45:15 03 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 05:45:15 03 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 05:45:15 03 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 05:45:15 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 05:45:15 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 05:45:15 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0060lz 05:45:15 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0060lz.x01 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0060lz.1a.x00 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0060lz.b.1a.x01 05:45:15 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0060lz.r in process_file_group 05:45:15 03 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460060.log 05:45:15 03 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 05:45:15 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0060dz 05:45:15 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0060dz.x05 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.1a.x00 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.1a.x01 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.1a.x02 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.1a.x03 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0060dz.1a.x04 05:45:15 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0060dz.b.1a.x05 05:45:15 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0060dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 05:45:16 03 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [60] 05:45:16 03 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [60] 05:45:16 03 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460060) for profiles 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 05:45:16 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1017) 2 3 6 8 to QC_PROBABLY_BAD because raw temperature spikes 05:45:16 03 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1017) 2 4 to QC_PROBABLY_BAD because raw conductivity spikes 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1017) 1017 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 05:45:16 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1017) 2 3 6 8 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 05:45:16 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1017) 4 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 05:45:16 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1017) 1017 to QC_BAD because changed raw cond implies changed raw salinity 05:45:16 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1017) 2 3 6 8 to QC_INTERPOLATED because temperature spikes 05:45:16 03 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1017) 2 4 to QC_INTERPOLATED because conductivity spikes 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1017) 1017 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1017) 495:500 to QC_BAD because slow apogee CT flow 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1017) 1:11 to QC_BAD because prior to dive start 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1017) 1016 to QC_BAD because end of climb 05:45:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1017) 1:11 495:500 1016 1017 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 05:45:16 03 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1017) 1:11 495:500 1016 1017 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 05:45:17 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.89 cm/s 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 05:45:17 03 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (211/1017) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 05:45:17 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1017) 2 3 6 8 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 05:45:17 03 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (211/1017) 360 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 05:45:17 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1017) 2 3 6 8 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 05:45:17 03 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1017) 1:11 495:500 1016 1017 to QC_BAD because changed salinity implies changed optode oxygen 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 05:45:17 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 60: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.87% reduction 05:45:17 03 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.60 05:45:17 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 05:45:17 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 05:45:17 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 05:45:17 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 05:45:45 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 05:45:46 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 05:45:46 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 05:45:50 03 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 05:45:50 03 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 05:45:50 03 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 05:45:50 03 Apr 2016 UTC /home/sg146/p1460060.log /home/sg146/p1460060.eng /home/sg146/p1460060.asc /home/sg146/p1460060.pro /home/sg146/p1460060.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 05:45:50 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:45:50 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 05:45:50 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 05:45:50 03 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 05:45:50 03 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 05:45:50 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 05:45:50 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 05:45:50 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 05:45:50 03 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 05:45:50 03 Apr 2016 UTC 10:59:40 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20270 10:59:40 03 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 11:04:50 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20598 11:04:50 03 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:04:50 03 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:04:50 03 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:04:50 03 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:04:50 03 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160403010449 ] 11:04:50 03 Apr 2016 UTC: INFO: Base.py(1333): PID:20605 11:04:50 03 Apr 2016 UTC: INFO: Base.py(1375): Started processing 11:04:50 03 Apr 2016 UTC 11:04:50 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:04:50 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:04:50 03 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:04:50 03 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:04:50 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:61 calls_made:1 call_cycle:0 2204.9220 -15632.7350 04/03/16 10:57:28 UTC) to sdrifter@soest.hawaii.edu 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:04:50 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:61 calls_made:1 call_cycle:0 11:04:50 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:04:50 03 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:04:51 03 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:04:51 03 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:04:51 03 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:04:51 03 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:04:51 03 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:04:51 03 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:04:52 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 11:04:52 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 11:04:52 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0061lz 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061lz.1a.x00 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061lz.1a.x01 11:04:52 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0061lz.r in process_file_group 11:04:52 03 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460061.log 11:04:52 03 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:04:52 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0061dz 11:04:52 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0061dz.x05 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.1a.x00 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.1a.x01 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.1a.x02 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.1a.x03 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0061dz.1a.x04 11:04:52 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0061dz.b.1a.x05 11:04:52 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0061dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 11:04:52 03 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [61] 11:04:52 03 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [61] 11:04:52 03 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460061) for profiles 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 11:04:52 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1062) 3 6 7 9 to QC_PROBABLY_BAD because raw temperature spikes 11:04:52 03 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1062) 1061 to QC_PROBABLY_BAD because raw conductivity spikes 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1062) 1062 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 11:04:52 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1062) 3 6 7 9 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:04:52 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1062) 1061 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:04:52 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1062) 1062 to QC_BAD because changed raw cond implies changed raw salinity 11:04:52 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1062) 3 6 7 9 to QC_INTERPOLATED because temperature spikes 11:04:52 03 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1062) 1061 to QC_INTERPOLATED because conductivity spikes 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1062) 1062 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1062) 529:534 to QC_BAD because slow apogee CT flow 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1062) 1:10 to QC_BAD because prior to dive start 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1062) 1060 1061 to QC_BAD because end of climb 11:04:52 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1062) 1:10 529:534 1060:1062 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:04:52 03 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1062) 1:10 529:534 1060:1062 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 11:04:53 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 11:04:53 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.24 cm/s 11:04:53 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.31 cm/s 11:04:53 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:04:53 03 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (219/1062) 388:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:04:53 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1062) 3 6 7 9 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:04:53 03 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (219/1062) 388:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:04:53 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1062) 3 6 7 9 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:04:53 03 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1062) 1:10 529:534 1060:1062 to QC_BAD because changed salinity implies changed optode oxygen 11:04:53 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:04:53 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 11:04:53 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 61: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.79% reduction 11:04:54 03 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.61 11:04:54 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:04:54 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:04:54 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:04:54 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 11:04:54 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 11:05:22 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 11:05:23 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 11:05:23 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 11:05:27 03 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:05:27 03 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:05:27 03 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:05:27 03 Apr 2016 UTC /home/sg146/p1460061.log /home/sg146/p1460061.eng /home/sg146/p1460061.asc /home/sg146/p1460061.pro /home/sg146/p1460061.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 11:05:27 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:05:27 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:05:27 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:05:27 03 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:05:27 03 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:05:27 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:05:27 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:05:27 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:05:27 03 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 11:05:27 03 Apr 2016 UTC 16:02:36 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28372 16:02:37 03 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:08:12 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28519 16:08:12 03 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:08:12 03 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 16:08:12 03 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 16:08:12 03 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:08:12 03 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160403060812 ] 16:08:12 03 Apr 2016 UTC: INFO: Base.py(1333): PID:28526 16:08:12 03 Apr 2016 UTC: INFO: Base.py(1375): Started processing 16:08:12 03 Apr 2016 UTC 16:08:12 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 16:08:12 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 16:08:12 03 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 16:08:13 03 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 16:08:13 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:62 calls_made:1 call_cycle:0 2204.5860 -15630.8490 04/03/16 16:00:35 UTC) to sdrifter@soest.hawaii.edu 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:08:13 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:62 calls_made:1 call_cycle:0 16:08:13 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:13 03 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:08:13 03 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 16:08:14 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 16:08:14 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 16:08:14 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0062lz 16:08:14 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0062lz.x01 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0062lz.1a.x00 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0062lz.b.1a.x01 16:08:14 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0062lz.r in process_file_group 16:08:14 03 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460062.log 16:08:14 03 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 16:08:14 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0062dz 16:08:14 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0062dz.x05 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.1a.x00 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.1a.x01 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.1a.x02 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.1a.x03 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0062dz.1a.x04 16:08:14 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0062dz.b.1a.x05 16:08:14 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0062dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [62] 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [62] 16:08:14 03 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460062) for profiles 16:08:14 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 16:08:15 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1006) 6 7 326 490 to QC_PROBABLY_BAD because raw temperature spikes 16:08:15 03 Apr 2016 UTC: INFO: QC.py(377): Changed (3/1006) 1004:1006 to QC_BAD because raw salinity below bound 16:08:15 03 Apr 2016 UTC: INFO: QC.py(388): Changed (3/1006) 1004:1006 to QC_BAD because bad raw salinity indicates raw conductivity issues 16:08:15 03 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1006) 387 to QC_PROBABLY_BAD because raw conductivity spikes 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1006) 6 7 326 490 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 387 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:08:15 03 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1006) 6 7 326 490 to QC_INTERPOLATED because temperature spikes 16:08:15 03 Apr 2016 UTC: INFO: QC.py(377): Changed (3/1006) 1004:1006 to QC_BAD because salinity below bound 16:08:15 03 Apr 2016 UTC: INFO: QC.py(388): Changed (3/1006) 1004:1006 to QC_BAD because bad salinity indicates conductivity issues 16:08:15 03 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1006) 387 to QC_INTERPOLATED because conductivity spikes 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1006) 488:493 to QC_BAD because slow apogee CT flow 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1006) 1:11 to QC_BAD because prior to dive start 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1006) 1003 to QC_BAD because end of climb 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/1006) 1:11 488:493 1003:1006 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (21/1006) 1:11 488:493 1003:1006 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 16:08:15 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:08:15 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 62 interp_salinity data_points in_between 683 690 % suspect thermal-inertia points 689 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 326 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 387 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 326 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.96 cm/s 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.09 cm/s 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:08:15 03 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (207/1006) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1006) 6 7 326 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:08:15 03 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (207/1006) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1006) 6 7 326 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:08:15 03 Apr 2016 UTC: INFO: QC.py(180): Changed (21/1006) 1:11 488:493 1003:1006 to QC_BAD because changed salinity implies changed optode oxygen 16:08:15 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:08:15 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 16:08:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 62: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.09% reduction 16:08:16 03 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.62 16:08:16 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:08:16 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:08:16 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:08:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 16:08:16 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 16:08:45 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 16:08:45 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 16:08:45 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 16:08:50 03 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:08:50 03 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:08:50 03 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:08:50 03 Apr 2016 UTC /home/sg146/p1460062.log /home/sg146/p1460062.eng /home/sg146/p1460062.asc /home/sg146/p1460062.pro /home/sg146/p1460062.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 16:08:50 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:50 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:08:50 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:08:50 03 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 16:08:50 03 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 16:08:50 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:08:50 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:08:50 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:08:50 03 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 16:08:50 03 Apr 2016 UTC 21:07:41 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4274 21:07:41 03 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 21:11:54 03 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4514 21:11:54 03 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 21:11:54 03 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 21:11:54 03 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 21:11:54 03 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 21:11:54 03 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160403111153 ] 21:11:54 03 Apr 2016 UTC: INFO: Base.py(1333): PID:4521 21:11:54 03 Apr 2016 UTC: INFO: Base.py(1375): Started processing 21:11:54 03 Apr 2016 UTC 21:11:54 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 21:11:54 03 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 21:11:54 03 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 21:11:54 03 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 21:11:54 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:63 calls_made:1 call_cycle:0 2204.8920 -15628.5760 04/03/16 21:05:34 UTC) to sdrifter@soest.hawaii.edu 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:11:54 03 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:63 calls_made:1 call_cycle:0 21:11:54 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:11:54 03 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 21:11:55 03 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 21:11:55 03 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 21:11:55 03 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 21:11:55 03 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 21:11:55 03 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 21:11:55 03 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 21:11:56 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 21:11:56 03 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 21:11:56 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0063lz 21:11:56 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0063lz.x01 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0063lz.1a.x00 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0063lz.b.1a.x01 21:11:56 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0063lz.r in process_file_group 21:11:56 03 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460063.log 21:11:56 03 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 21:11:56 03 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0063dz 21:11:56 03 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0063dz.x05 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.1a.x00 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.1a.x01 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.1a.x02 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.1a.x03 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0063dz.1a.x04 21:11:56 03 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0063dz.b.1a.x05 21:11:56 03 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0063dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 21:11:56 03 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [63] 21:11:56 03 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [63] 21:11:56 03 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460063) for profiles 21:11:56 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 21:11:56 03 Apr 2016 UTC: INFO: QC.py(365): Changed (12/1009) 2 4 6:9 490 525 529 530 550 557 to QC_PROBABLY_BAD because raw temperature spikes 21:11:56 03 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1009) 1009 to QC_BAD because raw salinity below bound 21:11:56 03 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1009) 1009 to QC_BAD because bad raw salinity indicates raw conductivity issues 21:11:56 03 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1009) 2 3 525 529 530 557 to QC_PROBABLY_BAD because raw conductivity spikes 21:11:56 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1009) 1008 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 21:11:56 03 Apr 2016 UTC: INFO: QC.py(180): Changed (12/1009) 2 4 6:9 490 525 529 530 550 557 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 21:11:56 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1009) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 21:11:56 03 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1009) 1008 to QC_BAD because changed raw cond implies changed raw salinity 21:11:56 03 Apr 2016 UTC: INFO: QC.py(365): Changed (12/1009) 2 4 6:9 490 525 529 530 550 557 to QC_INTERPOLATED because temperature spikes 21:11:56 03 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1009) 1009 to QC_BAD because salinity below bound 21:11:56 03 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1009) 1009 to QC_BAD because bad salinity indicates conductivity issues 21:11:56 03 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1009) 2 3 525 529 530 557 to QC_INTERPOLATED because conductivity spikes 21:11:56 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1009) 1008 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 21:11:56 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1009) 488:493 to QC_BAD because slow apogee CT flow 21:11:56 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1009) 1:11 to QC_BAD because prior to dive start 21:11:56 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1009) 1:11 488:493 1008 1009 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 21:11:56 03 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1009) 1:11 488:493 1008 1009 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 21:11:57 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 1 iterations 21:11:57 03 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 63 interp_salinity data_points in_between 683 686 % suspect thermal-inertia points 685 21:11:57 03 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1009) 525 529 530 550 557 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 21:11:57 03 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1009) 525 529 530 550 557 to QC_INTERPOLATED because changed corrected temp implies changed speed 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.52 cm/s 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.27 cm/s 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 21:11:57 03 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (206/1009) 355 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 21:11:57 03 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1009) 2 4 6:9 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 21:11:57 03 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (206/1009) 355 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 21:11:57 03 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1009) 2 4 6:9 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 21:11:57 03 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1009) 1:11 488:493 1008 1009 to QC_BAD because changed salinity implies changed optode oxygen 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 21:11:57 03 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 63: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.88% reduction 21:11:57 03 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.63 21:11:57 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 21:11:57 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 21:11:57 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 21:11:57 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 21:12:27 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 21:12:27 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 21:12:27 03 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 21:12:32 03 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 21:12:32 03 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 21:12:32 03 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 21:12:32 03 Apr 2016 UTC /home/sg146/p1460063.log /home/sg146/p1460063.eng /home/sg146/p1460063.asc /home/sg146/p1460063.pro /home/sg146/p1460063.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 21:12:32 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:12:32 03 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 21:12:32 03 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 21:12:32 03 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 21:12:32 03 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 21:12:32 03 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 21:12:32 03 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 21:12:32 03 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 21:12:32 03 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 21:12:32 03 Apr 2016 UTC 02:10:15 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 12084 02:10:15 04 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:15:15 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 12232 02:15:15 04 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:15:15 04 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:15:15 04 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:15:15 04 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:15:15 04 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160403161515 ] 02:15:15 04 Apr 2016 UTC: INFO: Base.py(1333): PID:12239 02:15:16 04 Apr 2016 UTC: INFO: Base.py(1375): Started processing 02:15:16 04 Apr 2016 UTC 02:15:16 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:15:16 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:15:16 04 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:15:16 04 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:15:16 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:64 calls_made:1 call_cycle:0 2205.5990 -15626.3590 04/04/16 02:08:05 UTC) to sdrifter@soest.hawaii.edu 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:15:16 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:64 calls_made:1 call_cycle:0 02:15:16 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:15:16 04 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:15:17 04 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:15:17 04 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:15:17 04 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:15:17 04 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:15:17 04 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:15:17 04 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:15:17 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 02:15:17 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 02:15:17 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0064lz 02:15:17 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0064lz.x01 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064lz.1a.x00 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0064lz.b.1a.x01 02:15:17 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0064lz.r in process_file_group 02:15:17 04 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460064.log 02:15:17 04 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 02:15:17 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0064dz 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.1a.x00 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.1a.x01 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.1a.x02 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.1a.x03 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.1a.x04 02:15:17 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0064dz.1a.x05 02:15:17 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0064dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 02:15:18 04 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [64] 02:15:18 04 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [64] 02:15:18 04 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460064) for profiles 02:15:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 02:15:18 04 Apr 2016 UTC: INFO: QC.py(365): Changed (5/1022) 2 5:7 463 to QC_PROBABLY_BAD because raw temperature spikes 02:15:18 04 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1022) 2 to QC_PROBABLY_BAD because raw conductivity spikes 02:15:18 04 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1022) 2 5:7 463 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:15:18 04 Apr 2016 UTC: INFO: QC.py(365): Changed (5/1022) 2 5:7 463 to QC_INTERPOLATED because temperature spikes 02:15:18 04 Apr 2016 UTC: INFO: QC.py(408): Changed (1/1022) 2 to QC_INTERPOLATED because conductivity spikes 02:15:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1022) 497:502 to QC_BAD because slow apogee CT flow 02:15:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1022) 1:10 to QC_BAD because prior to dive start 02:15:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/1022) 1:10 497:502 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:15:18 04 Apr 2016 UTC: INFO: QC.py(180): Changed (16/1022) 1:10 497:502 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 02:15:19 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:15:19 04 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1022) 463 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:15:19 04 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1022) 463 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.47 cm/s 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.27 cm/s 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:15:19 04 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (202/1022) 369 370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:15:19 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1022) 2 5:7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:15:19 04 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (202/1022) 369 370 372:375 377:380 382:385 387:390 392:395 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 02:15:19 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1022) 2 5:7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:15:19 04 Apr 2016 UTC: INFO: QC.py(180): Changed (16/1022) 1:10 497:502 to QC_BAD because changed salinity implies changed optode oxygen 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:15:19 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 64: Data set size for profile, binned and kkyy files reduced by 16 points, a 1.57% reduction 02:15:19 04 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.64 02:15:19 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:15:19 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:15:19 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 02:15:19 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 02:15:50 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 02:15:50 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 02:15:50 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 02:15:55 04 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:15:55 04 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:15:55 04 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:15:55 04 Apr 2016 UTC /home/sg146/p1460064.log /home/sg146/p1460064.eng /home/sg146/p1460064.asc /home/sg146/p1460064.pro /home/sg146/p1460064.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 02:15:55 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:15:55 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:15:55 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:15:55 04 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:15:55 04 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:15:55 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:15:55 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:15:55 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:15:55 04 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 02:15:55 04 Apr 2016 UTC 07:17:08 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 19789 07:17:08 04 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:21:45 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 19980 07:21:45 04 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:21:45 04 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 07:21:45 04 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 07:21:45 04 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:21:45 04 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160403212144 ] 07:21:45 04 Apr 2016 UTC: INFO: Base.py(1333): PID:19988 07:21:45 04 Apr 2016 UTC: INFO: Base.py(1375): Started processing 07:21:45 04 Apr 2016 UTC 07:21:45 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 07:21:45 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 07:21:45 04 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 07:21:45 04 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 07:21:45 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:65 calls_made:1 call_cycle:0 2205.9610 -15623.4380 04/04/16 07:14:58 UTC) to sdrifter@soest.hawaii.edu 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:21:45 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:1 call_cycle:0 07:21:45 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:21:45 04 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 07:21:46 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 07:21:46 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 07:21:46 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0065lz 07:21:46 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0065lz.x01 07:21:46 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065lz.1a.x00 07:21:46 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0065lz.b.1a.x01 07:21:46 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0065lz.r in process_file_group 07:21:46 04 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460065.log 07:21:46 04 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 07:21:46 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0065dz 07:21:46 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x00 07:21:46 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x01 07:21:46 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.x02.PARTIAL.1a.1 07:21:46 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0065dz.r in process_file_group 07:21:46 04 Apr 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0065dz.r - expected 0x1188575474, generated 0x94b80735 07:21:46 04 Apr 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0065dz.r - expected 0x34e59af3, generated 0xb7d2 07:21:46 04 Apr 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0065dz.r - skipping 07:21:46 04 Apr 2016 UTC: ERROR: Base.py(272): Could not process sg0065dz - skipping 07:21:46 04 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [65] 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.65 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:21:46 04 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:21:47 04 Apr 2016 UTC: ERROR: Base.py(1960): Dive [65] failed to process completely. The following files were not processed completely: /home/sg146/sg0065dz.r File ./sg0065dz.x02.PARTIAL.1 is a PARTIAL file - consider resend_dive /d 65 02 Glider logout not seen - retransmissions from glider possible Consult baselog_160403212144 for details. 07:21:47 04 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:21:47 04 Apr 2016 UTC /home/sg146/p1460065.log 07:21:47 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:21:47 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:21:47 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:21:47 04 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 07:21:47 04 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 07:21:47 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:21:47 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:21:47 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:21:47 04 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 07:21:47 04 Apr 2016 UTC 07:26:27 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20215 07:26:27 04 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:28:58 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20309 07:28:58 04 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:28:58 04 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 07:28:58 04 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 07:28:58 04 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:28:58 04 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160403212857 ] 07:28:58 04 Apr 2016 UTC: INFO: Base.py(1333): PID:20316 07:28:58 04 Apr 2016 UTC: INFO: Base.py(1375): Started processing 07:28:58 04 Apr 2016 UTC 07:28:58 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 07:28:58 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 07:28:58 04 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 07:28:58 04 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 07:28:58 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:65 calls_made:2 call_cycle:0 2205.9610 -15623.4380 04/04/16 07:14:58 UTC) to sdrifter@soest.hawaii.edu 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:28:58 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:65 calls_made:2 call_cycle:0 07:28:58 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:28:58 04 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:28:59 04 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:28:59 04 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:28:59 04 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 07:28:59 04 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:28:59 04 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:28:59 04 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 07:28:59 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 07:28:59 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 07:28:59 04 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 07:28:59 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0065dz 07:28:59 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0065dz.x05 07:28:59 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x00 07:28:59 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x01 07:28:59 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x02 07:28:59 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x03 07:28:59 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0065dz.1a.x04 07:28:59 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0065dz.b.1a.x05 07:28:59 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0065dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 07:29:00 04 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [65] 07:29:00 04 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [65] 07:29:00 04 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460065) for profiles 07:29:00 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 07:29:00 04 Apr 2016 UTC: INFO: QC.py(365): Changed (6/1015) 2 5 6 394 570 1014 to QC_PROBABLY_BAD because raw temperature spikes 07:29:00 04 Apr 2016 UTC: INFO: QC.py(408): Changed (3/1015) 2 394 570 to QC_PROBABLY_BAD because raw conductivity spikes 07:29:00 04 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1015) 2 5 6 394 570 1014 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:29:00 04 Apr 2016 UTC: INFO: QC.py(365): Changed (6/1015) 2 5 6 394 570 1014 to QC_INTERPOLATED because temperature spikes 07:29:00 04 Apr 2016 UTC: INFO: QC.py(408): Changed (3/1015) 2 394 570 to QC_INTERPOLATED because conductivity spikes 07:29:00 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1015) 487:492 to QC_BAD because slow apogee CT flow 07:29:00 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1015) 1:11 to QC_BAD because prior to dive start 07:29:00 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/1015) 1013:1015 to QC_BAD because end of climb 07:29:00 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1015) 1:11 487:492 1013:1015 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:29:00 04 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1015) 1:11 487:492 1013:1015 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 07:29:01 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 07:29:01 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1015) 394 570 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:29:01 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1015) 394 570 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.53 cm/s 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.25 cm/s 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:29:01 04 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (210/1015) 355 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:29:01 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1015) 2 5 6 1014 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:29:01 04 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (210/1015) 355 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 07:29:01 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1015) 2 5 6 1014 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:29:01 04 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1015) 1:11 487:492 1013:1015 to QC_BAD because changed salinity implies changed optode oxygen 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:29:01 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 65: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.97% reduction 07:29:01 04 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.65 07:29:01 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:29:01 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:29:01 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 07:29:01 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 07:29:33 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 07:29:33 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 07:29:33 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 07:29:38 04 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:29:38 04 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:29:38 04 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:29:38 04 Apr 2016 UTC /home/sg146/p1460065.eng /home/sg146/p1460065.asc /home/sg146/p1460065.pro /home/sg146/p1460065.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 07:29:38 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:29:38 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:29:38 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:29:38 04 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 07:29:38 04 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 07:29:38 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:29:38 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:29:38 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:29:38 04 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 07:29:38 04 Apr 2016 UTC 12:25:14 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27714 12:25:14 04 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:32:23 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28081 12:32:23 04 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:32:23 04 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 12:32:23 04 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 12:32:23 04 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:32:23 04 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160404023222 ] 12:32:23 04 Apr 2016 UTC: INFO: Base.py(1333): PID:28088 12:32:23 04 Apr 2016 UTC: INFO: Base.py(1375): Started processing 12:32:23 04 Apr 2016 UTC 12:32:23 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 12:32:23 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 12:32:23 04 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 12:32:23 04 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 12:32:23 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:66 calls_made:1 call_cycle:0 2205.6620 -15620.7140 04/04/16 12:23:05 UTC) to sdrifter@soest.hawaii.edu 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:32:23 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:66 calls_made:1 call_cycle:0 12:32:23 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:32:23 04 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:32:24 04 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:32:24 04 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:32:24 04 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 12:32:24 04 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:32:24 04 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:32:24 04 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 12:32:24 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 12:32:24 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 12:32:24 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0066lz 12:32:24 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0066lz.x01 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0066lz.1a.x00 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0066lz.b.1a.x01 12:32:24 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0066lz.r in process_file_group 12:32:24 04 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460066.log 12:32:24 04 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 12:32:24 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0066dz 12:32:24 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0066dz.x05 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.1a.x00 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.1a.x01 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.1a.x02 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.1a.x03 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0066dz.1a.x04 12:32:24 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0066dz.b.1a.x05 12:32:24 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0066dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 12:32:25 04 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [66] 12:32:25 04 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [66] 12:32:25 04 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460066) for profiles 12:32:25 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 12:32:25 04 Apr 2016 UTC: INFO: QC.py(365): Changed (4/992) 2 7 400 567 to QC_PROBABLY_BAD because raw temperature spikes 12:32:25 04 Apr 2016 UTC: INFO: QC.py(377): Changed (1/992) 992 to QC_BAD because raw salinity below bound 12:32:25 04 Apr 2016 UTC: INFO: QC.py(388): Changed (1/992) 992 to QC_BAD because bad raw salinity indicates raw conductivity issues 12:32:25 04 Apr 2016 UTC: INFO: QC.py(408): Changed (2/992) 400 567 to QC_PROBABLY_BAD because raw conductivity spikes 12:32:25 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/992) 2 7 400 567 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:32:25 04 Apr 2016 UTC: INFO: QC.py(365): Changed (4/992) 2 7 400 567 to QC_INTERPOLATED because temperature spikes 12:32:25 04 Apr 2016 UTC: INFO: QC.py(377): Changed (1/992) 992 to QC_BAD because salinity below bound 12:32:25 04 Apr 2016 UTC: INFO: QC.py(388): Changed (1/992) 992 to QC_BAD because bad salinity indicates conductivity issues 12:32:25 04 Apr 2016 UTC: INFO: QC.py(408): Changed (2/992) 400 567 to QC_INTERPOLATED because conductivity spikes 12:32:25 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/992) 484:489 to QC_BAD because slow apogee CT flow 12:32:25 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/992) 1:10 to QC_BAD because prior to dive start 12:32:25 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/992) 991 to QC_BAD because end of climb 12:32:25 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/992) 1:10 484:489 991 992 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:32:25 04 Apr 2016 UTC: INFO: QC.py(180): Changed (18/992) 1:10 484:489 991 992 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 12:32:26 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:32:26 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/992) 400 567 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:32:26 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/992) 400 567 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.22 cm/s 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.37 cm/s 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:32:26 04 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/992) 353:355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:32:26 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/992) 2 7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:32:26 04 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/992) 353:355 357:360 362:365 367:370 372:375 377:380 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 12:32:26 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/992) 2 7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:32:26 04 Apr 2016 UTC: INFO: QC.py(180): Changed (18/992) 1:10 484:489 991 992 to QC_BAD because changed salinity implies changed optode oxygen 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:32:26 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 66: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.81% reduction 12:32:26 04 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.66 12:32:26 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:32:26 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:32:26 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 12:32:26 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 12:32:58 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 12:32:58 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 12:32:58 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 12:33:03 04 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:33:03 04 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:33:03 04 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:33:03 04 Apr 2016 UTC /home/sg146/p1460066.log /home/sg146/p1460066.eng /home/sg146/p1460066.asc /home/sg146/p1460066.pro /home/sg146/p1460066.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 12:33:03 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:33:03 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:33:03 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:33:03 04 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 12:33:03 04 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 12:33:03 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:33:03 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:33:03 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:33:03 04 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 12:33:03 04 Apr 2016 UTC 17:39:38 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 3857 17:39:38 04 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 17:46:13 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4129 17:46:13 04 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 17:46:13 04 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 17:46:13 04 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 17:46:13 04 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 17:46:13 04 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160404074613 ] 17:46:13 04 Apr 2016 UTC: INFO: Base.py(1333): PID:4136 17:46:13 04 Apr 2016 UTC: INFO: Base.py(1375): Started processing 17:46:13 04 Apr 2016 UTC 17:46:13 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 17:46:13 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 17:46:13 04 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 17:46:14 04 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 17:46:14 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:67 calls_made:3 call_cycle:0 2205.6280 -15618.4520 04/04/16 17:33:05 UTC) to sdrifter@soest.hawaii.edu 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:46:14 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:67 calls_made:3 call_cycle:0 17:46:14 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:46:14 04 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 17:46:15 04 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 17:46:15 04 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 17:46:15 04 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 17:46:15 04 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 17:46:15 04 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 17:46:15 04 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 17:46:15 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 17:46:15 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 17:46:15 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0067lz 17:46:15 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0067lz.x01 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067lz.1a.x00 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0067lz.b.1a.x01 17:46:15 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0067lz.r in process_file_group 17:46:15 04 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460067.log 17:46:15 04 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 17:46:15 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0067dz 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.1a.x00 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.1a.x01 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.1a.x02 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.1a.x03 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.1a.x04 17:46:15 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0067dz.1a.x05 17:46:15 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0067dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 17:46:16 04 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [67] 17:46:16 04 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [67] 17:46:16 04 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460067) for profiles 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 17:46:16 04 Apr 2016 UTC: INFO: QC.py(365): Changed (9/1026) 2 6 386 388 393 394 404 566 580 to QC_PROBABLY_BAD because raw temperature spikes 17:46:16 04 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1026) 1025 to QC_BAD because raw salinity below bound 17:46:16 04 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1026) 1025 to QC_BAD because bad raw salinity indicates raw conductivity issues 17:46:16 04 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1026) 386 388 393 404 566 580 to QC_PROBABLY_BAD because raw conductivity spikes 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (9/1026) 2 6 386 388 393 394 404 566 580 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 17:46:16 04 Apr 2016 UTC: INFO: QC.py(365): Changed (9/1026) 2 6 386 388 393 394 404 566 580 to QC_INTERPOLATED because temperature spikes 17:46:16 04 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1026) 1025 to QC_BAD because salinity below bound 17:46:16 04 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1026) 1025 to QC_BAD because bad salinity indicates conductivity issues 17:46:16 04 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1026) 386 388 393 404 566 580 to QC_INTERPOLATED because conductivity spikes 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1026) 495:500 to QC_BAD because slow apogee CT flow 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1026) 1:10 to QC_BAD because prior to dive start 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/1026) 1024 1026 to QC_BAD because end of climb 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1026) 1:10 495:500 1024:1026 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1026) 1:10 495:500 1024:1026 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 17:46:16 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 17:46:16 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 67 interp_salinity data_points in_between 794 803 % suspect thermal-inertia points 795 796 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1026) 386 388 393 394 404 566 580 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1026) 386 388 393 394 404 566 580 to QC_INTERPOLATED because changed corrected temp implies changed speed 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.32 cm/s 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 17:46:16 04 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (209/1026) 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1026) 2 6 386 566 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 17:46:16 04 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (209/1026) 362:365 367:370 372:375 377:380 382:385 387:390 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1026) 2 6 386 566 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 17:46:16 04 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1026) 1:10 495:500 1024:1026 to QC_BAD because changed salinity implies changed optode oxygen 17:46:16 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 17:46:16 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 17:46:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 67: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.85% reduction 17:46:17 04 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.67 17:46:17 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 17:46:17 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 17:46:17 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 17:46:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 17:46:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 17:46:49 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 17:46:49 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 17:46:49 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 17:46:54 04 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 17:46:54 04 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 17:46:54 04 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 17:46:54 04 Apr 2016 UTC /home/sg146/p1460067.log /home/sg146/p1460067.eng /home/sg146/p1460067.asc /home/sg146/p1460067.pro /home/sg146/p1460067.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 17:46:54 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:46:54 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 17:46:54 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 17:46:54 04 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 17:46:54 04 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 17:46:54 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 17:46:54 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 17:46:54 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 17:46:54 04 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 17:46:54 04 Apr 2016 UTC 22:56:37 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 12049 22:56:37 04 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 23:03:14 04 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 12338 23:03:14 04 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:03:14 04 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:03:14 04 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:03:14 04 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:03:14 04 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160404130314 ] 23:03:14 04 Apr 2016 UTC: INFO: Base.py(1333): PID:12345 23:03:14 04 Apr 2016 UTC: INFO: Base.py(1375): Started processing 23:03:14 04 Apr 2016 UTC 23:03:14 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:03:14 04 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:03:14 04 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 23:03:15 04 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:03:15 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:68 calls_made:5 call_cycle:0 2205.8720 -15615.3890 04/04/16 22:44:58 UTC) to sdrifter@soest.hawaii.edu 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:03:15 04 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:68 calls_made:5 call_cycle:0 23:03:15 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:03:15 04 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:03:16 04 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:03:16 04 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:03:16 04 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:03:16 04 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:03:16 04 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:03:16 04 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:03:16 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 23:03:16 04 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 23:03:16 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0068lz 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068lz.1a.x00 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068lz.1a.x01 23:03:16 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0068lz.r in process_file_group 23:03:16 04 Apr 2016 UTC: INFO: BaseGZip.py(195): Bad CRC and file len and ./sg0068lz.r has a trailing 1a - trying to recalc the crc and file length without it 23:03:16 04 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460068.log 23:03:16 04 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 23:03:16 04 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0068dz 23:03:16 04 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0068dz.x05 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.1a.x00 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.1a.x01 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.1a.x02 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.1a.x03 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0068dz.1a.x04 23:03:16 04 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0068dz.b.1a.x05 23:03:16 04 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0068dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 23:03:17 04 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [68] 23:03:17 04 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [68] 23:03:17 04 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460068) for profiles 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 23:03:17 04 Apr 2016 UTC: INFO: QC.py(365): Changed (14/1010) 2 3 5:8 397 400 403 430 550 573 574 1009 to QC_PROBABLY_BAD because raw temperature spikes 23:03:17 04 Apr 2016 UTC: INFO: QC.py(408): Changed (9/1010) 397 400:403 430 550 574 1009 to QC_PROBABLY_BAD because raw conductivity spikes 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1010) 1010 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (14/1010) 2 3 5:8 397 400 403 430 550 573 574 1009 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1010) 401 402 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1010) 1010 to QC_BAD because changed raw cond implies changed raw salinity 23:03:17 04 Apr 2016 UTC: INFO: QC.py(365): Changed (14/1010) 2 3 5:8 397 400 403 430 550 573 574 1009 to QC_INTERPOLATED because temperature spikes 23:03:17 04 Apr 2016 UTC: INFO: QC.py(408): Changed (9/1010) 397 400:403 430 550 574 1009 to QC_INTERPOLATED because conductivity spikes 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1010) 1010 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1010) 477:482 to QC_BAD because slow apogee CT flow 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1010) 1:10 to QC_BAD because prior to dive start 23:03:17 04 Apr 2016 UTC: INFO: QC.py(488): Changed (1/1010) 1009 to QC_PROBABLY_BAD because bad interpolation anchors 23:03:17 04 Apr 2016 UTC: INFO: QC.py(489): SUGGESTION: 68 bad_conductivity data_points in_between 1007 1009 % bad interpolation anchors 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/1010) 1:10 477:482 1010 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (17/1010) 1:10 477:482 1010 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 23:03:17 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 1009 23:03:17 04 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:03:17 04 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1010) 1009 to QC_BAD because salinity below bound 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1010) 397 400 403 430 550 573 574 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (2/1010) 401 402 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (8/1010) 397 400 403 430 550 573 574 1009 to QC_INTERPOLATED because changed corrected temp implies changed speed 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.77 cm/s 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.14 cm/s 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:03:17 04 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (209/1010) 347:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1010) 2 3 5:8 1009 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:03:17 04 Apr 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/1010) 1009 to QC_BAD because slow flow in SBE43 23:03:17 04 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (209/1010) 347:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1010) 2 3 5:8 1009 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (18/1010) 1:10 477:482 1009 1010 to QC_BAD because changed salinity implies changed optode oxygen 23:03:17 04 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1010) 401 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 23:03:17 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:03:18 04 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 23:03:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 68: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.78% reduction 23:03:18 04 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.68 23:03:18 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:03:18 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:03:18 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:03:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 23:03:18 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 23:03:51 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 23:03:51 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 23:03:51 04 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 23:03:57 04 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:03:57 04 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:03:57 04 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:03:57 04 Apr 2016 UTC /home/sg146/p1460068.log /home/sg146/p1460068.eng /home/sg146/p1460068.asc /home/sg146/p1460068.pro /home/sg146/p1460068.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 23:03:57 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:03:57 04 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:03:57 04 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:03:57 04 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:03:57 04 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:03:57 04 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:03:57 04 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:03:57 04 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:03:57 04 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 23:03:57 04 Apr 2016 UTC 04:04:20 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20431 04:04:20 05 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:10:14 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 20596 04:10:14 05 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:10:14 05 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:10:14 05 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:10:14 05 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:10:14 05 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160404181013 ] 04:10:14 05 Apr 2016 UTC: INFO: Base.py(1333): PID:20603 04:10:14 05 Apr 2016 UTC: INFO: Base.py(1375): Started processing 04:10:14 05 Apr 2016 UTC 04:10:14 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:10:14 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:10:14 05 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:10:14 05 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:10:14 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:69 calls_made:1 call_cycle:0 2205.8300 -15612.6420 04/05/16 04:02:05 UTC) to sdrifter@soest.hawaii.edu 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:10:14 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:69 calls_made:1 call_cycle:0 04:10:14 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:10:14 05 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:10:15 05 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:10:16 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 04:10:16 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 04:10:16 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0069lz 04:10:16 05 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0069lz.x01 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069lz.1a.x00 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0069lz.b.1a.x01 04:10:16 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0069lz.r in process_file_group 04:10:16 05 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460069.log 04:10:16 05 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:10:16 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0069dz 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.1a.x00 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.1a.x01 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.1a.x02 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.1a.x03 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.1a.x04 04:10:16 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0069dz.1a.x05 04:10:16 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0069dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [69] 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [69] 04:10:16 05 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460069) for profiles 04:10:16 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:10:17 05 Apr 2016 UTC: INFO: QC.py(365): Changed (11/1012) 2:4 391 392 479 565 566 568 569 1011 to QC_PROBABLY_BAD because raw temperature spikes 04:10:17 05 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1012) 1011 to QC_BAD because raw salinity below bound 04:10:17 05 Apr 2016 UTC: INFO: QC.py(408): Changed (8/1012) 3 4 391 565 566 568 569 1011 to QC_PROBABLY_BAD because raw conductivity spikes 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (10/1012) 2:4 391 392 479 565 566 568 569 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:10:17 05 Apr 2016 UTC: INFO: QC.py(365): Changed (11/1012) 2:4 391 392 479 565 566 568 569 1011 to QC_INTERPOLATED because temperature spikes 04:10:17 05 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1012) 1011 to QC_BAD because salinity below bound 04:10:17 05 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1012) 1011 to QC_BAD because bad salinity indicates conductivity issues 04:10:17 05 Apr 2016 UTC: INFO: QC.py(408): Changed (7/1012) 3 4 391 565 566 568 569 to QC_INTERPOLATED because conductivity spikes 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1012) 477:482 to QC_BAD because slow apogee CT flow 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1012) 1:11 to QC_BAD because prior to dive start 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/1012) 1009 1010 1012 to QC_BAD because end of climb 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/1012) 1:11 477:482 1009:1012 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (21/1012) 1:11 477:482 1009:1012 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:10:17 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:10:17 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 69 interp_salinity data_points in_between 195 205 % suspect thermal-inertia points 204 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1012) 391 392 565 566 568 569 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1012) 391 392 565 566 568 569 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.29 cm/s 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.20 cm/s 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:10:17 05 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1012) 344 345 347:350 352:355 357:360 362:365 367:370 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1012) 2:4 391 566 1011 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:10:17 05 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (209/1012) 339 344 345 347:350 352:355 357:360 362:365 367:370 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (6/1012) 2:4 391 566 1011 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:10:17 05 Apr 2016 UTC: INFO: QC.py(180): Changed (21/1012) 1:11 477:482 1009:1012 to QC_BAD because changed salinity implies changed optode oxygen 04:10:17 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:10:17 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:10:18 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 69: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.08% reduction 04:10:18 05 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.69 04:10:18 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:10:18 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:10:18 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:10:18 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:10:18 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:10:51 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 04:10:52 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:10:52 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:10:57 05 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:10:57 05 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:10:57 05 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:10:57 05 Apr 2016 UTC /home/sg146/p1460069.log /home/sg146/p1460069.eng /home/sg146/p1460069.asc /home/sg146/p1460069.pro /home/sg146/p1460069.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:10:57 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:10:57 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:10:57 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:10:57 05 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:10:57 05 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:10:57 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:10:57 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:10:57 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:10:57 05 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 04:10:57 05 Apr 2016 UTC 09:12:43 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28381 09:12:43 05 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 09:17:05 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28747 09:17:05 05 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 09:17:05 05 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 09:17:05 05 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 09:17:05 05 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 09:17:05 05 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160404231705 ] 09:17:05 05 Apr 2016 UTC: INFO: Base.py(1333): PID:28754 09:17:05 05 Apr 2016 UTC: INFO: Base.py(1375): Started processing 09:17:05 05 Apr 2016 UTC 09:17:05 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 09:17:05 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 09:17:05 05 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 09:17:06 05 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 09:17:06 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:70 calls_made:1 call_cycle:0 2205.7250 -15609.4130 04/05/16 09:10:34 UTC) to sdrifter@soest.hawaii.edu 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:17:06 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:70 calls_made:1 call_cycle:0 09:17:06 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:06 05 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 09:17:07 05 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 09:17:07 05 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 09:17:07 05 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 09:17:07 05 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 09:17:07 05 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 09:17:07 05 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 09:17:07 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 09:17:07 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 09:17:07 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0070lz 09:17:07 05 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0070lz.x01 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070lz.1a.x00 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0070lz.b.1a.x01 09:17:07 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0070lz.r in process_file_group 09:17:07 05 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460070.log 09:17:07 05 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 09:17:07 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0070dz 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.1a.x00 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.1a.x01 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.1a.x02 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.1a.x03 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.1a.x04 09:17:07 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0070dz.1a.x05 09:17:07 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0070dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 09:17:08 05 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [70] 09:17:08 05 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [70] 09:17:08 05 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460070) for profiles 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 09:17:08 05 Apr 2016 UTC: INFO: QC.py(365): Changed (12/1019) 3 4 6:8 393 421 452 489 559 560 1017 to QC_PROBABLY_BAD because raw temperature spikes 09:17:08 05 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1019) 1017 to QC_BAD because raw salinity below bound 09:17:08 05 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1019) 380 393 452 559 560 1017 to QC_PROBABLY_BAD because raw conductivity spikes 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (4/1019) 1016:1019 to QC_BAD because uncorrectable 0.4m raw conductivity bubble on climb 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (11/1019) 3 4 6:8 393 421 452 489 559 560 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1019) 380 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (3/1019) 1016 1018 1019 to QC_BAD because changed raw cond implies changed raw salinity 09:17:08 05 Apr 2016 UTC: INFO: QC.py(365): Changed (12/1019) 3 4 6:8 393 421 452 489 559 560 1017 to QC_INTERPOLATED because temperature spikes 09:17:08 05 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1019) 1017 to QC_BAD because salinity below bound 09:17:08 05 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1019) 1017 to QC_BAD because bad salinity indicates conductivity issues 09:17:08 05 Apr 2016 UTC: INFO: QC.py(408): Changed (6/1019) 380 393 452 559 560 1018 to QC_INTERPOLATED because conductivity spikes 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (3/1019) 1016 1018 1019 to QC_BAD because uncorrectable 0.4m conductivity bubble on climb 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1019) 487:492 to QC_BAD because slow apogee CT flow 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1019) 1:10 to QC_BAD because prior to dive start 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1019) 1:10 487:492 1016:1019 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1019) 1:10 487:492 1016:1019 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 09:17:08 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 09:17:08 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 70 interp_salinity data_points in_between 820 827 % suspect thermal-inertia points 821 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1019) 393 421 452 559 560 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1019) 380 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (5/1019) 393 421 452 559 560 to QC_INTERPOLATED because changed corrected temp implies changed speed 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.92 cm/s 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.20 cm/s 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 09:17:08 05 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/1019) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1019) 3 4 6:8 421 1017 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 09:17:08 05 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/1019) 357:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1019) 3 4 6:8 421 1017 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 09:17:08 05 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1019) 1:10 487:492 1016:1019 to QC_BAD because changed salinity implies changed optode oxygen 09:17:08 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 09:17:08 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 09:17:09 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 70: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.96% reduction 09:17:09 05 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.70 09:17:09 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 09:17:09 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 09:17:09 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 09:17:09 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 09:17:09 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 09:17:43 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 09:17:43 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 09:17:43 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 09:17:49 05 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 09:17:49 05 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 09:17:49 05 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 09:17:49 05 Apr 2016 UTC /home/sg146/p1460070.log /home/sg146/p1460070.eng /home/sg146/p1460070.asc /home/sg146/p1460070.pro /home/sg146/p1460070.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 09:17:49 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:49 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 09:17:49 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 09:17:49 05 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 09:17:49 05 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 09:17:49 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 09:17:49 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 09:17:49 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 09:17:49 05 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 09:17:49 05 Apr 2016 UTC 14:15:29 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4562 14:15:29 05 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:17:59 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4661 14:17:59 05 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:17:59 05 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:17:59 05 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:17:59 05 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:17:59 05 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160405041759 ] 14:17:59 05 Apr 2016 UTC: INFO: Base.py(1333): PID:4668 14:17:59 05 Apr 2016 UTC: INFO: Base.py(1375): Started processing 14:17:59 05 Apr 2016 UTC 14:17:59 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:17:59 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:17:59 05 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:18:00 05 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:18:00 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:71 calls_made:1 call_cycle:0 2206.0880 -15606.6410 04/05/16 14:13:22 UTC) to sdrifter@soest.hawaii.edu 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:18:00 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:1 call_cycle:0 14:18:00 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:18:00 05 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:18:01 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 14:18:01 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 14:18:01 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0071lz 14:18:01 05 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0071lz.x01 14:18:01 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0071lz.1a.x00 14:18:01 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0071lz.b.1a.x01 14:18:01 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0071lz.r in process_file_group 14:18:01 05 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460071.log 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [71] 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [71] 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.71 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:18:01 05 Apr 2016 UTC /home/sg146/p1460071.log 14:18:01 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:18:01 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:18:01 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:18:01 05 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:18:01 05 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:18:01 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:18:01 05 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 14:18:01 05 Apr 2016 UTC 14:22:37 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4949 14:22:37 05 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:26:24 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 5066 14:26:24 05 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:26:24 05 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:26:24 05 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:26:24 05 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:26:24 05 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160405042624 ] 14:26:24 05 Apr 2016 UTC: INFO: Base.py(1333): PID:5073 14:26:24 05 Apr 2016 UTC: INFO: Base.py(1375): Started processing 14:26:24 05 Apr 2016 UTC 14:26:24 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:26:24 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:26:25 05 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:26:25 05 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:26:25 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:71 calls_made:3 call_cycle:0 2206.0880 -15606.6410 04/05/16 14:13:22 UTC) to sdrifter@soest.hawaii.edu 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:26:25 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:71 calls_made:3 call_cycle:0 14:26:25 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:26:25 05 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:26:26 05 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:26:26 05 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:26:26 05 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:26:26 05 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:26:26 05 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:26:26 05 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:26:26 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 14:26:26 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 14:26:26 05 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:26:26 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0071dz 14:26:26 05 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0071dz.x05 14:26:26 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.1a.x00 14:26:26 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.1a.x01 14:26:26 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.1a.x02 14:26:26 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.1a.x03 14:26:26 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0071dz.1a.x04 14:26:26 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0071dz.b.1a.x05 14:26:26 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0071dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 14:26:27 05 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [71] 14:26:27 05 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [71] 14:26:27 05 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460071) for profiles 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 14:26:27 05 Apr 2016 UTC: INFO: QC.py(365): Changed (15/999) 2 4:9 383 401 426:428 548 564 591 to QC_PROBABLY_BAD because raw temperature spikes 14:26:27 05 Apr 2016 UTC: INFO: QC.py(408): Changed (7/999) 383 401 426:428 564 591 to QC_PROBABLY_BAD because raw conductivity spikes 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/999) 999 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 14:26:27 05 Apr 2016 UTC: INFO: QC.py(180): Changed (15/999) 2 4:9 383 401 426:428 548 564 591 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:26:27 05 Apr 2016 UTC: INFO: QC.py(180): Changed (1/999) 999 to QC_BAD because changed raw cond implies changed raw salinity 14:26:27 05 Apr 2016 UTC: INFO: QC.py(365): Changed (15/999) 2 4:9 383 401 426:428 548 564 591 to QC_INTERPOLATED because temperature spikes 14:26:27 05 Apr 2016 UTC: INFO: QC.py(408): Changed (7/999) 383 401 426:428 564 591 to QC_INTERPOLATED because conductivity spikes 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/999) 999 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/999) 490:495 to QC_BAD because slow apogee CT flow 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/999) 1:10 to QC_BAD because prior to dive start 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/999) 997 998 to QC_BAD because end of climb 14:26:27 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/999) 1:10 490:495 997:999 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:26:27 05 Apr 2016 UTC: INFO: QC.py(180): Changed (19/999) 1:10 490:495 997:999 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 14:26:28 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:26:28 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 71 interp_salinity data_points in_between 740 755 % suspect thermal-inertia points 746 14:26:28 05 Apr 2016 UTC: INFO: QC.py(180): Changed (8/999) 383 401 426:428 548 564 591 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:26:28 05 Apr 2016 UTC: INFO: QC.py(180): Changed (8/999) 383 401 426:428 548 564 591 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.30 cm/s 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:26:28 05 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (208/999) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:26:28 05 Apr 2016 UTC: INFO: QC.py(180): Changed (10/999) 2 4:9 401 426 591 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:26:28 05 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (208/999) 358:360 362:365 367:370 372:375 377:380 382:385 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 14:26:28 05 Apr 2016 UTC: INFO: QC.py(180): Changed (10/999) 2 4:9 401 426 591 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:26:28 05 Apr 2016 UTC: INFO: QC.py(180): Changed (19/999) 1:10 490:495 997:999 to QC_BAD because changed salinity implies changed optode oxygen 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:26:28 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 71: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.90% reduction 14:26:28 05 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.71 14:26:28 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:26:28 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:26:28 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 14:26:28 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 14:27:03 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 14:27:03 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 14:27:03 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 14:27:09 05 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:27:09 05 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:27:09 05 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:27:09 05 Apr 2016 UTC /home/sg146/p1460071.eng /home/sg146/p1460071.asc /home/sg146/p1460071.pro /home/sg146/p1460071.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 14:27:09 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:27:09 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:27:09 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:27:09 05 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:27:09 05 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:27:09 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:27:09 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:27:09 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:27:09 05 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 14:27:09 05 Apr 2016 UTC 19:21:21 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 13037 19:21:21 05 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 19:26:47 05 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 13266 19:26:47 05 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:26:47 05 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 19:26:47 05 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 19:26:47 05 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:26:47 05 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160405092646 ] 19:26:47 05 Apr 2016 UTC: INFO: Base.py(1333): PID:13273 19:26:47 05 Apr 2016 UTC: INFO: Base.py(1375): Started processing 19:26:47 05 Apr 2016 UTC 19:26:47 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 19:26:47 05 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 19:26:47 05 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 19:26:47 05 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 19:26:47 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:72 calls_made:1 call_cycle:0 2206.3040 -15603.9970 04/05/16 19:19:05 UTC) to sdrifter@soest.hawaii.edu 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:26:47 05 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:72 calls_made:1 call_cycle:0 19:26:47 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:26:47 05 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:26:48 05 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 19:26:49 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 19:26:49 05 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 19:26:49 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0072lz 19:26:49 05 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0072lz.x01 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0072lz.1a.x00 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0072lz.b.1a.x01 19:26:49 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0072lz.r in process_file_group 19:26:49 05 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460072.log 19:26:49 05 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 19:26:49 05 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0072dz 19:26:49 05 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0072dz.x05 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.1a.x00 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.1a.x01 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.1a.x02 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.1a.x03 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0072dz.1a.x04 19:26:49 05 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0072dz.b.1a.x05 19:26:49 05 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0072dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [72] 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [72] 19:26:49 05 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460072) for profiles 19:26:49 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 19:26:50 05 Apr 2016 UTC: INFO: QC.py(365): Changed (4/998) 420 421 539 997 to QC_PROBABLY_BAD because raw temperature spikes 19:26:50 05 Apr 2016 UTC: INFO: QC.py(377): Changed (2/998) 997 998 to QC_BAD because raw salinity below bound 19:26:50 05 Apr 2016 UTC: INFO: QC.py(388): Changed (1/998) 998 to QC_BAD because bad raw salinity indicates raw conductivity issues 19:26:50 05 Apr 2016 UTC: INFO: QC.py(408): Changed (3/998) 398 420 421 to QC_PROBABLY_BAD because raw conductivity spikes 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (3/998) 420 421 539 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (1/998) 398 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 19:26:50 05 Apr 2016 UTC: INFO: QC.py(365): Changed (4/998) 420 421 539 997 to QC_INTERPOLATED because temperature spikes 19:26:50 05 Apr 2016 UTC: INFO: QC.py(377): Changed (2/998) 997 998 to QC_BAD because salinity below bound 19:26:50 05 Apr 2016 UTC: INFO: QC.py(388): Changed (2/998) 997 998 to QC_BAD because bad salinity indicates conductivity issues 19:26:50 05 Apr 2016 UTC: INFO: QC.py(408): Changed (3/998) 398 420 421 to QC_INTERPOLATED because conductivity spikes 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/998) 474:479 to QC_BAD because slow apogee CT flow 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/998) 1:10 to QC_BAD because prior to dive start 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/998) 1:10 474:479 997 998 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (18/998) 1:10 474:479 997 998 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 19:26:50 05 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (3/998) 420 421 539 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (1/998) 398 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (3/998) 420 421 539 to QC_INTERPOLATED because changed corrected temp implies changed speed 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.53 cm/s 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.19 cm/s 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:26:50 05 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (202/998) 348:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (2/998) 421 997 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:26:50 05 Apr 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/998) 996 to QC_BAD because slow flow in SBE43 19:26:50 05 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (202/998) 348:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (2/998) 421 997 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:26:50 05 Apr 2016 UTC: INFO: QC.py(180): Changed (18/998) 1:10 474:479 997 998 to QC_BAD because changed salinity implies changed optode oxygen 19:26:50 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:26:50 05 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 19:26:51 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 72: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.80% reduction 19:26:51 05 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.72 19:26:51 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:26:51 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:26:51 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:26:51 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 19:26:51 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 19:27:26 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 19:27:26 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 19:27:26 05 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 19:27:32 05 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:27:32 05 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:27:32 05 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:27:32 05 Apr 2016 UTC /home/sg146/p1460072.log /home/sg146/p1460072.eng /home/sg146/p1460072.asc /home/sg146/p1460072.pro /home/sg146/p1460072.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 19:27:32 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:27:32 05 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:27:32 05 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:27:32 05 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 19:27:32 05 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 19:27:32 05 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:27:32 05 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:27:32 05 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:27:32 05 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 19:27:32 05 Apr 2016 UTC 00:31:11 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 23906 00:31:11 06 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {ST} 00:36:25 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 24046 00:36:25 06 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:36:25 06 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:36:25 06 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:36:25 06 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:36:25 06 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160405143624 ] 00:36:25 06 Apr 2016 UTC: INFO: Base.py(1333): PID:24053 00:36:25 06 Apr 2016 UTC: INFO: Base.py(1375): Started processing 00:36:25 06 Apr 2016 UTC 00:36:25 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:36:25 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:36:25 06 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:36:26 06 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:36:26 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:73 calls_made:1 call_cycle:0 2206.2160 -15600.8030 04/06/16 00:29:05 UTC) to sdrifter@soest.hawaii.edu 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:36:26 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:73 calls_made:1 call_cycle:0 00:36:26 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:36:26 06 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:36:27 06 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:36:27 06 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:36:27 06 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:36:27 06 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:36:27 06 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:36:27 06 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:36:27 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 00:36:27 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 00:36:27 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0073lz 00:36:27 06 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0073lz.x01 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0073lz.1a.x00 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0073lz.b.1a.x01 00:36:27 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0073lz.r in process_file_group 00:36:27 06 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460073.log 00:36:27 06 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:36:27 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0073dz 00:36:27 06 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0073dz.x05 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.1a.x00 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.1a.x01 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.1a.x02 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.1a.x03 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0073dz.1a.x04 00:36:27 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0073dz.b.1a.x05 00:36:27 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0073dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 00:36:28 06 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [73] 00:36:28 06 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [73] 00:36:28 06 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460073) for profiles 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 00:36:28 06 Apr 2016 UTC: INFO: QC.py(365): Changed (15/1019) 2:4 6 382 384 385 554 566 568 574 587 588 1017 ... to QC_PROBABLY_BAD because raw temperature spikes 00:36:28 06 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1019) 1018 to QC_BAD because raw salinity below bound 00:36:28 06 Apr 2016 UTC: INFO: QC.py(408): Changed (10/1019) 382 384 385 566 568 574 579 587 1017 1018 to QC_PROBABLY_BAD because raw conductivity spikes 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/1019) 1019 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 00:36:28 06 Apr 2016 UTC: INFO: QC.py(180): Changed (14/1019) 2:4 6 382 384 385 554 566 568 574 587 588 1017 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:36:28 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1019) 579 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:36:28 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1019) 1019 to QC_BAD because changed raw cond implies changed raw salinity 00:36:28 06 Apr 2016 UTC: INFO: QC.py(365): Changed (15/1019) 2:4 6 382 384 385 554 566 568 574 587 588 1017 ... to QC_INTERPOLATED because temperature spikes 00:36:28 06 Apr 2016 UTC: INFO: QC.py(377): Changed (1/1019) 1018 to QC_BAD because salinity below bound 00:36:28 06 Apr 2016 UTC: INFO: QC.py(388): Changed (1/1019) 1018 to QC_BAD because bad salinity indicates conductivity issues 00:36:28 06 Apr 2016 UTC: INFO: QC.py(408): Changed (9/1019) 382 384 385 566 568 574 579 587 1017 to QC_INTERPOLATED because conductivity spikes 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/1019) 1019 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1019) 484:489 to QC_BAD because slow apogee CT flow 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/1019) 1:11 to QC_BAD because prior to dive start 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/1019) 1017 to QC_BAD because end of climb 00:36:28 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/1019) 1:11 484:489 1017:1019 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:36:28 06 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1019) 1:11 484:489 1017:1019 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 00:36:29 06 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:36:29 06 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 73 interp_salinity data_points in_between 768 772 % suspect thermal-inertia points 769 00:36:29 06 Apr 2016 UTC: INFO: QC.py(180): Changed (9/1019) 382 384 385 554 566 568 574 587 588 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:36:29 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1019) 579 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:36:29 06 Apr 2016 UTC: INFO: QC.py(180): Changed (9/1019) 382 384 385 554 566 568 574 587 588 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.05 cm/s 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.37 cm/s 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:36:29 06 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (214/1019) 348:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:36:29 06 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1019) 2:4 6 566 1017 1018 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:36:29 06 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (214/1019) 348:350 352:355 357:360 362:365 367:370 372:375 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:36:29 06 Apr 2016 UTC: INFO: QC.py(180): Changed (7/1019) 2:4 6 566 1017 1018 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:36:29 06 Apr 2016 UTC: INFO: QC.py(180): Changed (20/1019) 1:11 484:489 1017:1019 to QC_BAD because changed salinity implies changed optode oxygen 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:36:29 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 73: Data set size for profile, binned and kkyy files reduced by 20 points, a 1.96% reduction 00:36:29 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.73 00:36:29 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.73 00:36:29 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./science to ./science.73 00:36:29 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:36:29 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:36:29 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 00:36:29 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 00:37:05 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 00:37:05 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 00:37:05 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 00:37:11 06 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:37:11 06 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:37:11 06 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:37:11 06 Apr 2016 UTC /home/sg146/p1460073.log /home/sg146/p1460073.eng /home/sg146/p1460073.asc /home/sg146/p1460073.pro /home/sg146/p1460073.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 00:37:11 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:37:11 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:37:11 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:37:11 06 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:37:11 06 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:37:11 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:37:11 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:37:11 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:37:11 06 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 00:37:11 06 Apr 2016 UTC 04:28:57 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 30170 04:28:57 06 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:35:16 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 30383 04:35:16 06 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:35:16 06 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:35:16 06 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:35:16 06 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:35:16 06 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160405183515 ] 04:35:16 06 Apr 2016 UTC: INFO: Base.py(1333): PID:30390 04:35:16 06 Apr 2016 UTC: INFO: Base.py(1375): Started processing 04:35:16 06 Apr 2016 UTC 04:35:16 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:35:16 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:35:16 06 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:35:16 06 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:35:16 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:74 calls_made:1 call_cycle:0 2207.6200 -15600.7540 04/06/16 04:26:53 UTC) to sdrifter@soest.hawaii.edu 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:35:16 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:74 calls_made:1 call_cycle:0 04:35:16 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:35:16 06 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:35:17 06 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:35:18 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 04:35:18 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 04:35:18 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0074lz 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074lz.1a.x00 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074lz.1a.x01 04:35:18 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0074lz.r in process_file_group 04:35:18 06 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460074.log 04:35:18 06 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:35:18 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0074dz 04:35:18 06 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0074dz.x05 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.1a.x00 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.1a.x01 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.1a.x02 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.1a.x03 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0074dz.1a.x04 04:35:18 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0074dz.b.1a.x05 04:35:18 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0074dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [74] 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [74] 04:35:18 06 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460074) for profiles 04:35:18 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:35:19 06 Apr 2016 UTC: INFO: QC.py(365): Changed (16/982) 2 3 6 7 182:184 403 426 427 475 487 488 494 495 ... to QC_PROBABLY_BAD because raw temperature spikes 04:35:19 06 Apr 2016 UTC: INFO: QC.py(408): Changed (4/982) 403 475 487 494 to QC_PROBABLY_BAD because raw conductivity spikes 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (16/982) 2 3 6 7 182:184 403 426 427 475 487 488 494 495 ... to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:35:19 06 Apr 2016 UTC: INFO: QC.py(365): Changed (16/982) 2 3 6 7 182:184 403 426 427 475 487 488 494 495 ... to QC_INTERPOLATED because temperature spikes 04:35:19 06 Apr 2016 UTC: INFO: QC.py(408): Changed (4/982) 403 475 487 494 to QC_INTERPOLATED because conductivity spikes 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/982) 455:460 to QC_BAD because slow apogee CT flow 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/982) 1:10 to QC_BAD because prior to dive start 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/982) 981 982 to QC_BAD because end of climb 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/982) 1:10 455:460 981 982 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (18/982) 1:10 455:460 981 982 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:35:19 06 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (11/982) 182:184 403 426 427 475 487 488 494 495 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (11/982) 182:184 403 426 427 475 487 488 494 495 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.66 cm/s 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.47 cm/s 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:35:19 06 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (127/982) 378:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (9/982) 2 3 6 7 182:184 426 981 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:35:19 06 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (127/982) 378:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (9/982) 2 3 6 7 182:184 426 981 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:35:19 06 Apr 2016 UTC: INFO: QC.py(180): Changed (18/982) 1:10 455:460 981 982 to QC_BAD because changed salinity implies changed optode oxygen 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:35:19 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:35:19 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 74: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.83% reduction 04:35:20 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.74 04:35:20 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:35:20 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:35:20 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:35:20 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:35:20 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:35:56 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 04:35:56 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:35:56 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:36:02 06 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:36:02 06 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:36:02 06 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:36:02 06 Apr 2016 UTC /home/sg146/p1460074.log /home/sg146/p1460074.eng /home/sg146/p1460074.asc /home/sg146/p1460074.pro /home/sg146/p1460074.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:36:02 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:36:02 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:36:02 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:36:02 06 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:36:02 06 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:36:02 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:36:02 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:36:02 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:36:02 06 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 04:36:02 06 Apr 2016 UTC 08:26:38 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4571 08:26:38 06 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:32:04 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4913 08:32:04 06 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:32:04 06 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 08:32:04 06 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 08:32:04 06 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:32:04 06 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160405223203 ] 08:32:04 06 Apr 2016 UTC: INFO: Base.py(1333): PID:4920 08:32:04 06 Apr 2016 UTC: INFO: Base.py(1375): Started processing 08:32:04 06 Apr 2016 UTC 08:32:04 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 08:32:04 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 08:32:04 06 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 08:32:05 06 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 08:32:05 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:75 calls_made:1 call_cycle:0 2209.2150 -15600.5210 04/06/16 08:24:34 UTC) to sdrifter@soest.hawaii.edu 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:32:05 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:75 calls_made:1 call_cycle:0 08:32:05 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:05 06 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:32:06 06 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:32:06 06 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:32:06 06 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 08:32:06 06 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:32:06 06 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:32:06 06 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 08:32:06 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 08:32:06 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 08:32:06 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0075lz 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075lz.1a.x00 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075lz.1a.x01 08:32:06 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0075lz.r in process_file_group 08:32:06 06 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460075.log 08:32:06 06 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 08:32:06 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0075dz 08:32:06 06 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0075dz.x05 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.1a.x00 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.1a.x01 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.1a.x02 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.1a.x03 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0075dz.1a.x04 08:32:06 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0075dz.b.1a.x05 08:32:06 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0075dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 08:32:07 06 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [75] 08:32:07 06 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [75] 08:32:07 06 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460075) for profiles 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 08:32:07 06 Apr 2016 UTC: INFO: QC.py(365): Changed (7/974) 3:8 438 to QC_PROBABLY_BAD because raw temperature spikes 08:32:07 06 Apr 2016 UTC: INFO: QC.py(408): Changed (3/974) 5 438 488 to QC_PROBABLY_BAD because raw conductivity spikes 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (7/974) 3:8 438 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/974) 488 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 08:32:07 06 Apr 2016 UTC: INFO: QC.py(365): Changed (7/974) 3:8 438 to QC_INTERPOLATED because temperature spikes 08:32:07 06 Apr 2016 UTC: INFO: QC.py(408): Changed (3/974) 5 438 488 to QC_INTERPOLATED because conductivity spikes 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/974) 467:472 to QC_BAD because slow apogee CT flow 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/974) 1:10 to QC_BAD because prior to dive start 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/974) 973 974 to QC_BAD because end of climb 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/974) 1:10 467:472 973 974 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (18/974) 1:10 467:472 973 974 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 08:32:07 06 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/974) 438 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/974) 488 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/974) 438 to QC_INTERPOLATED because changed corrected temp implies changed speed 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.98 cm/s 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.40 cm/s 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:32:07 06 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (127/974) 392:395 397:400 402:405 407:410 412:415 417:420 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (6/974) 3:8 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:32:07 06 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (127/974) 392:395 397:400 402:405 407:410 412:415 417:420 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (6/974) 3:8 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:32:07 06 Apr 2016 UTC: INFO: QC.py(180): Changed (18/974) 1:10 467:472 973 974 to QC_BAD because changed salinity implies changed optode oxygen 08:32:07 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:32:07 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 08:32:08 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 75: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.85% reduction 08:32:08 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.75 08:32:08 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:32:08 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:32:08 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:32:08 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 08:32:08 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 08:32:44 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 08:32:45 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 08:32:45 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 08:32:51 06 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:32:51 06 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:32:51 06 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:32:51 06 Apr 2016 UTC /home/sg146/p1460075.log /home/sg146/p1460075.eng /home/sg146/p1460075.asc /home/sg146/p1460075.pro /home/sg146/p1460075.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 08:32:51 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:51 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:32:51 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:51 06 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 08:32:51 06 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 08:32:51 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:32:51 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:32:51 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:32:51 06 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 08:32:51 06 Apr 2016 UTC 12:18:38 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11031 12:18:38 06 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:23:38 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11272 12:23:38 06 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:23:38 06 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 12:23:38 06 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 12:23:38 06 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:23:38 06 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160406022337 ] 12:23:38 06 Apr 2016 UTC: INFO: Base.py(1333): PID:11279 12:23:38 06 Apr 2016 UTC: INFO: Base.py(1375): Started processing 12:23:38 06 Apr 2016 UTC 12:23:38 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 12:23:38 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 12:23:38 06 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 12:23:38 06 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 12:23:38 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:23:38 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:23:38 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:38 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:23:38 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:38 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:23:38 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:38 06 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:76 calls_made:1 call_cycle:0 2209.9390 -15600.4710 04/06/16 12:16:34 UTC) to sdrifter@soest.hawaii.edu 12:23:44 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:44 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:23:44 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:44 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:23:44 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:44 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:23:44 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:44 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:23:44 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:76 calls_made:1 call_cycle:0 12:23:44 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:23:44 06 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:23:45 06 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:23:45 06 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:23:45 06 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 12:23:45 06 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:23:45 06 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:23:45 06 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 12:23:45 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 12:23:45 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 12:23:45 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0076lz 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076lz.1a.x00 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076lz.1a.x01 12:23:45 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0076lz.r in process_file_group 12:23:45 06 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460076.log 12:23:45 06 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 12:23:45 06 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0076dz 12:23:45 06 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0076dz.x05 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.1a.x00 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.1a.x01 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.1a.x02 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.1a.x03 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0076dz.1a.x04 12:23:45 06 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0076dz.b.1a.x05 12:23:45 06 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0076dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 12:23:46 06 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [76] 12:23:46 06 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [76] 12:23:46 06 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460076) for profiles 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 12:23:46 06 Apr 2016 UTC: INFO: QC.py(365): Changed (8/954) 2 5:7 417 455 468 520 to QC_PROBABLY_BAD because raw temperature spikes 12:23:46 06 Apr 2016 UTC: INFO: QC.py(408): Changed (3/954) 449 455 520 to QC_PROBABLY_BAD because raw conductivity spikes 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/954) 954 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (8/954) 2 5:7 417 455 468 520 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/954) 449 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/954) 954 to QC_BAD because changed raw cond implies changed raw salinity 12:23:46 06 Apr 2016 UTC: INFO: QC.py(365): Changed (8/954) 2 5:7 417 455 468 520 to QC_INTERPOLATED because temperature spikes 12:23:46 06 Apr 2016 UTC: INFO: QC.py(408): Changed (3/954) 449 455 520 to QC_INTERPOLATED because conductivity spikes 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/954) 954 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/954) 466:471 to QC_BAD because slow apogee CT flow 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/954) 1:10 to QC_BAD because prior to dive start 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/954) 953 to QC_BAD because end of climb 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/954) 1:10 466:471 953 954 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (18/954) 1:10 466:471 953 954 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 12:23:46 06 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (3/954) 417 455 520 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (1/954) 449 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (3/954) 417 455 520 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.85 cm/s 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.57 cm/s 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:23:46 06 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (124/954) 392:395 397:400 402:405 407:410 412:415 417:420 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (4/954) 2 5:7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:23:46 06 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (124/954) 392:395 397:400 402:405 407:410 412:415 417:420 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (4/954) 2 5:7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:23:46 06 Apr 2016 UTC: INFO: QC.py(180): Changed (18/954) 1:10 466:471 953 954 to QC_BAD because changed salinity implies changed optode oxygen 12:23:46 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:23:46 06 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 12:23:47 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 76: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.89% reduction 12:23:47 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.76 12:23:47 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:23:47 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:23:47 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:23:47 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 12:23:47 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 12:24:24 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 12:24:24 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 12:24:24 06 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 12:24:30 06 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:24:30 06 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:24:30 06 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:24:30 06 Apr 2016 UTC /home/sg146/p1460076.log /home/sg146/p1460076.eng /home/sg146/p1460076.asc /home/sg146/p1460076.pro /home/sg146/p1460076.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 12:24:30 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:24:30 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:24:30 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:24:30 06 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 12:24:30 06 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 12:24:30 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:24:30 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:24:30 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:24:30 06 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 12:24:30 06 Apr 2016 UTC 16:15:09 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 17433 16:15:09 06 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:15:45 06 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 17467 16:15:45 06 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:15:45 06 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 16:15:45 06 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 16:15:45 06 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:15:45 06 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160406061544 ] 16:15:45 06 Apr 2016 UTC: INFO: Base.py(1333): PID:17474 16:15:45 06 Apr 2016 UTC: INFO: Base.py(1375): Started processing 16:15:45 06 Apr 2016 UTC 16:15:45 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 16:15:45 06 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 16:15:45 06 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 16:15:46 06 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 16:15:46 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (No GPS fix available for this call) to sdrifter@soest.hawaii.edu 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:15:46 06 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:None calls_made:None call_cycle:None 16:15:46 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:46 06 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 16:15:47 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 16:15:47 06 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 16:15:47 06 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [] 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.76 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:15:47 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:47 06 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:15:47 06 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:15:47 06 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 16:15:47 06 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:15:47 06 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:15:47 06 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 16:15:47 06 Apr 2016 UTC 00:30:00 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 30502 00:30:00 07 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 00:43:45 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 30963 00:43:45 07 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:43:45 07 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:43:45 07 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:43:45 07 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:43:45 07 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160406144345 ] 00:43:45 07 Apr 2016 UTC: INFO: Base.py(1333): PID:30970 00:43:45 07 Apr 2016 UTC: INFO: Base.py(1375): Started processing 00:43:45 07 Apr 2016 UTC 00:43:45 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:43:45 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:43:45 07 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:43:46 07 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:43:46 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:79 calls_made:2 call_cycle:0 2212.8910 -15600.6320 04/07/16 00:25:28 UTC) to sdrifter@soest.hawaii.edu 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:43:46 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:79 calls_made:2 call_cycle:0 00:43:46 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:43:46 07 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:43:47 07 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:43:47 07 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:43:47 07 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:43:47 07 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:43:47 07 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:43:47 07 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:43:47 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 00:43:47 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 00:43:48 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 00:43:48 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0077lz 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077lz.1a.x00 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077lz.1a.x01 00:43:48 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0077lz.r in process_file_group 00:43:48 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460077.log 00:43:48 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:43:48 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0077dz 00:43:48 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0077dz.x05 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.1a.x00 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.1a.x01 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.1a.x02 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.1a.x03 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0077dz.1a.x04 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0077dz.b.1a.x05 00:43:48 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0077dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 00:43:48 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 00:43:48 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0078lz 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078lz.1a.x00 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078lz.1a.x01 00:43:48 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0078lz.r in process_file_group 00:43:48 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460078.log 00:43:48 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:43:48 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0078dz 00:43:48 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0078dz.x05 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.1a.x00 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.1a.x01 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.1a.x02 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.1a.x03 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0078dz.1a.x04 00:43:48 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0078dz.b.1a.x05 00:43:48 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0078dz.r in process_file_group 00:43:49 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0079lz 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079lz.1a.x00 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079lz.1a.x01 00:43:49 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0079lz.r in process_file_group 00:43:49 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460079.log 00:43:49 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:43:49 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0079dz 00:43:49 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0079dz.x05 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.1a.x00 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.1a.x01 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.1a.x02 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.1a.x03 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0079dz.1a.x04 00:43:49 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0079dz.b.1a.x05 00:43:49 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0079dz.r in process_file_group 00:43:49 07 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [77, 78, 79] 00:43:49 07 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [77, 78, 79] 00:43:49 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460077) for profiles 00:43:49 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 00:43:49 07 Apr 2016 UTC: INFO: QC.py(365): Changed (2/976) 2 975 to QC_PROBABLY_BAD because raw temperature spikes 00:43:49 07 Apr 2016 UTC: INFO: QC.py(377): Changed (1/976) 976 to QC_BAD because raw salinity below bound 00:43:49 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/976) 976 to QC_BAD because bad raw salinity indicates raw conductivity issues 00:43:49 07 Apr 2016 UTC: INFO: QC.py(408): Changed (2/976) 428 429 to QC_PROBABLY_BAD because raw conductivity spikes 00:43:49 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/976) 2 975 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:43:49 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/976) 428 429 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:43:49 07 Apr 2016 UTC: INFO: QC.py(365): Changed (2/976) 2 975 to QC_INTERPOLATED because temperature spikes 00:43:49 07 Apr 2016 UTC: INFO: QC.py(377): Changed (1/976) 976 to QC_BAD because salinity below bound 00:43:49 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/976) 976 to QC_BAD because bad salinity indicates conductivity issues 00:43:49 07 Apr 2016 UTC: INFO: QC.py(408): Changed (2/976) 428 429 to QC_INTERPOLATED because conductivity spikes 00:43:49 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/976) 482:487 to QC_BAD because slow apogee CT flow 00:43:49 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/976) 1:10 to QC_BAD because prior to dive start 00:43:49 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/976) 974 975 to QC_BAD because end of climb 00:43:49 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/976) 1:10 482:487 974:976 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:43:49 07 Apr 2016 UTC: INFO: QC.py(180): Changed (19/976) 1:10 482:487 974:976 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 00:43:50 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:43:50 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/976) 428 429 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:43:50 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.46 cm/s 00:43:50 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.53 cm/s 00:43:50 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:43:50 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (129/976) 402:405 407:410 412:415 417:420 422:425 427:430 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:43:50 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/976) 2 975 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:43:50 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (129/976) 402:405 407:410 412:415 417:420 422:425 427:430 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:43:50 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/976) 2 975 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:43:50 07 Apr 2016 UTC: INFO: QC.py(180): Changed (19/976) 1:10 482:487 974:976 to QC_BAD because changed salinity implies changed optode oxygen 00:43:50 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:43:50 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 00:43:50 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 77: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.95% reduction 00:43:50 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460078) for profiles 00:43:50 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:43:51 07 Apr 2016 UTC: INFO: QC.py(365): Changed (8/1006) 4:8 481 1004 1005 to QC_PROBABLY_BAD because raw temperature spikes 00:43:51 07 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1006) 474 1005 to QC_PROBABLY_BAD because raw conductivity spikes 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (8/1006) 4:8 481 1004 1005 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 474 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:43:51 07 Apr 2016 UTC: INFO: QC.py(365): Changed (8/1006) 4:8 481 1004 1005 to QC_INTERPOLATED because temperature spikes 00:43:51 07 Apr 2016 UTC: INFO: QC.py(408): Changed (2/1006) 474 1005 to QC_INTERPOLATED because conductivity spikes 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1006) 471:476 to QC_BAD because slow apogee CT flow 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (9/1006) 1:9 to QC_BAD because prior to dive start 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (4/1006) 1003:1006 to QC_BAD because end of climb 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/1006) 1:9 471:476 1003:1006 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1006) 1:9 471:476 1003:1006 to QC_BAD because changed corrected salin implies changed speed 00:43:51 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 481 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/1006) 481 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.00 cm/s 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.40 cm/s 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:43:51 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (127/1006) 395 397:400 402:405 407:410 412:415 417:420 422:425 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (8/1006) 4:8 481 1004 1005 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:43:51 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (127/1006) 395 397:400 402:405 407:410 412:415 417:420 422:425 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (8/1006) 4:8 481 1004 1005 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:43:51 07 Apr 2016 UTC: INFO: QC.py(180): Changed (19/1006) 1:9 471:476 1003:1006 to QC_BAD because changed salinity implies changed optode oxygen 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:43:51 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 78: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.89% reduction 00:43:52 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460079) for profiles 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files 00:43:52 07 Apr 2016 UTC: INFO: QC.py(365): Changed (3/980) 5 409 979 to QC_PROBABLY_BAD because raw temperature spikes 00:43:52 07 Apr 2016 UTC: INFO: QC.py(408): Changed (1/980) 409 to QC_PROBABLY_BAD because raw conductivity spikes 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/980) 980 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (3/980) 5 409 979 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/980) 980 to QC_BAD because changed raw cond implies changed raw salinity 00:43:52 07 Apr 2016 UTC: INFO: QC.py(365): Changed (3/980) 5 409 979 to QC_INTERPOLATED because temperature spikes 00:43:52 07 Apr 2016 UTC: INFO: QC.py(408): Changed (1/980) 409 to QC_INTERPOLATED because conductivity spikes 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/980) 980 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/980) 464:469 to QC_BAD because slow apogee CT flow 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (13/980) 1:13 to QC_BAD because prior to dive start 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/980) 1:13 464:469 980 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (20/980) 1:13 464:469 980 to QC_BAD because changed corrected salin implies changed speed 00:43:52 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:43:52 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 79 interp_salinity data_points in_between 896 978 % suspect thermal-inertia points 978 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/980) 409 979 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/980) 409 979 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.58 cm/s 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.30 cm/s 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:43:52 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (128/980) 384 385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/980) 5 979 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:43:52 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (128/980) 384 385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/980) 5 979 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:43:52 07 Apr 2016 UTC: INFO: QC.py(180): Changed (20/980) 1:13 464:469 980 to QC_BAD because changed salinity implies changed optode oxygen 00:43:52 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:43:53 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 79: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.04% reduction 00:43:53 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.79 00:43:53 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.79 00:43:53 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:43:53 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:43:53 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:43:53 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 00:43:53 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 00:44:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 00:44:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 00:44:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 00:44:38 07 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:44:38 07 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:44:38 07 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:44:38 07 Apr 2016 UTC /home/sg146/p1460077.log /home/sg146/p1460077.eng /home/sg146/p1460078.log /home/sg146/p1460078.eng /home/sg146/p1460079.log /home/sg146/p1460079.eng /home/sg146/p1460077.asc /home/sg146/p1460078.asc /home/sg146/p1460079.asc /home/sg146/p1460077.pro /home/sg146/p1460077.nc /home/sg146/p1460078.pro /home/sg146/p1460078.nc /home/sg146/p1460079.pro /home/sg146/p1460079.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 00:44:38 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:44:38 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:44:38 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:44:38 07 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:44:38 07 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:44:38 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:44:38 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:44:38 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:44:38 07 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 00:44:38 07 Apr 2016 UTC 04:32:04 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 5017 04:32:04 07 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:37:28 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 5164 04:37:28 07 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:37:28 07 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:37:28 07 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:37:28 07 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:37:28 07 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160406183727 ] 04:37:28 07 Apr 2016 UTC: INFO: Base.py(1333): PID:5171 04:37:28 07 Apr 2016 UTC: INFO: Base.py(1375): Started processing 04:37:28 07 Apr 2016 UTC 04:37:28 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:37:28 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:37:28 07 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:37:28 07 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:37:28 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:80 calls_made:1 call_cycle:0 2212.7260 -15603.0700 04/07/16 04:30:04 UTC) to sdrifter@soest.hawaii.edu 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:37:28 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:80 calls_made:1 call_cycle:0 04:37:28 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:37:28 07 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:37:29 07 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:37:30 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 04:37:30 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 04:37:30 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 04:37:30 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 04:37:30 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0080lz 04:37:30 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0080lz.x01 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0080lz.1a.x00 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0080lz.b.1a.x01 04:37:30 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0080lz.r in process_file_group 04:37:30 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460080.log 04:37:30 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:37:30 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0080dz 04:37:30 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0080dz.x05 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.1a.x00 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.1a.x01 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.1a.x02 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.1a.x03 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0080dz.1a.x04 04:37:30 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0080dz.b.1a.x05 04:37:30 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0080dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [80] 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [80] 04:37:30 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460080) for profiles 04:37:30 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:37:31 07 Apr 2016 UTC: INFO: QC.py(365): Changed (7/961) 5 10 422 423 438 471 474 to QC_PROBABLY_BAD because raw temperature spikes 04:37:31 07 Apr 2016 UTC: INFO: QC.py(377): Changed (1/961) 961 to QC_BAD because raw salinity below bound 04:37:31 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/961) 961 to QC_BAD because bad raw salinity indicates raw conductivity issues 04:37:31 07 Apr 2016 UTC: INFO: QC.py(408): Changed (5/961) 422 423 425 454 474 to QC_PROBABLY_BAD because raw conductivity spikes 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (7/961) 5 10 422 423 438 471 474 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/961) 425 454 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:37:31 07 Apr 2016 UTC: INFO: QC.py(365): Changed (7/961) 5 10 422 423 438 471 474 to QC_INTERPOLATED because temperature spikes 04:37:31 07 Apr 2016 UTC: INFO: QC.py(377): Changed (1/961) 961 to QC_BAD because salinity below bound 04:37:31 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/961) 961 to QC_BAD because bad salinity indicates conductivity issues 04:37:31 07 Apr 2016 UTC: INFO: QC.py(408): Changed (5/961) 422 423 425 454 474 to QC_INTERPOLATED because conductivity spikes 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/961) 447:452 to QC_BAD because slow apogee CT flow 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (14/961) 1:14 to QC_BAD because prior to dive start 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (21/961) 1:14 447:452 961 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (21/961) 1:14 447:452 961 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:37:31 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:37:31 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 80 interp_salinity data_points in_between 668 678 % suspect thermal-inertia points 670 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (5/961) 422 423 438 471 474 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/961) 425 454 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (5/961) 422 423 438 471 474 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.70 cm/s 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.20 cm/s 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:37:31 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/961) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (3/961) 5 10 471 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:37:31 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (126/961) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (3/961) 5 10 471 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:37:31 07 Apr 2016 UTC: INFO: QC.py(180): Changed (21/961) 1:14 447:452 961 to QC_BAD because changed salinity implies changed optode oxygen 04:37:31 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:37:31 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:37:32 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 80: Data set size for profile, binned and kkyy files reduced by 21 points, a 2.19% reduction 04:37:32 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.80 04:37:32 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:37:32 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:37:32 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:37:32 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:37:32 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:38:11 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 04:38:11 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:38:11 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:38:18 07 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:38:18 07 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:38:18 07 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:38:18 07 Apr 2016 UTC /home/sg146/p1460080.log /home/sg146/p1460080.eng /home/sg146/p1460080.asc /home/sg146/p1460080.pro /home/sg146/p1460080.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:38:18 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:38:18 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:38:18 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:38:18 07 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:38:18 07 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:38:18 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:38:18 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:38:18 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:38:18 07 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 04:38:18 07 Apr 2016 UTC 08:27:18 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11218 08:27:18 07 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 08:32:20 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11428 08:32:20 07 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 08:32:20 07 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 08:32:20 07 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 08:32:20 07 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 08:32:20 07 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160406223219 ] 08:32:20 07 Apr 2016 UTC: INFO: Base.py(1333): PID:11435 08:32:20 07 Apr 2016 UTC: INFO: Base.py(1375): Started processing 08:32:20 07 Apr 2016 UTC 08:32:20 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 08:32:20 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 08:32:20 07 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 08:32:20 07 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 08:32:20 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 08:32:20 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:32:20 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:20 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:32:20 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:20 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:32:20 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:20 07 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:81 calls_made:1 call_cycle:0 2212.6000 -15605.0080 04/07/16 08:24:59 UTC) to sdrifter@soest.hawaii.edu 08:32:21 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:21 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:32:21 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:21 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:32:21 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:21 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:32:21 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:21 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:32:21 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:81 calls_made:1 call_cycle:0 08:32:21 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:32:21 07 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 08:32:22 07 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 08:32:22 07 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 08:32:22 07 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 08:32:22 07 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 08:32:22 07 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 08:32:22 07 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 08:32:22 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 08:32:22 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 08:32:22 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 08:32:22 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 08:32:22 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0081lz 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081lz.1a.x00 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081lz.1a.x01 08:32:22 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0081lz.r in process_file_group 08:32:22 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460081.log 08:32:22 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 08:32:22 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0081dz 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.1a.x00 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.1a.x01 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.1a.x02 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.1a.x03 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.1a.x04 08:32:22 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0081dz.1a.x05 08:32:22 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0081dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 08:32:23 07 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [81] 08:32:23 07 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [81] 08:32:23 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460081) for profiles 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 08:32:23 07 Apr 2016 UTC: INFO: QC.py(365): Changed (5/987) 2 4:6 456 to QC_PROBABLY_BAD because raw temperature spikes 08:32:23 07 Apr 2016 UTC: INFO: QC.py(408): Changed (1/987) 4 to QC_PROBABLY_BAD because raw conductivity spikes 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/987) 987 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 08:32:23 07 Apr 2016 UTC: INFO: QC.py(180): Changed (5/987) 2 4:6 456 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 08:32:23 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/987) 987 to QC_BAD because changed raw cond implies changed raw salinity 08:32:23 07 Apr 2016 UTC: INFO: QC.py(365): Changed (5/987) 2 4:6 456 to QC_INTERPOLATED because temperature spikes 08:32:23 07 Apr 2016 UTC: INFO: QC.py(408): Changed (1/987) 4 to QC_INTERPOLATED because conductivity spikes 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/987) 987 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/987) 454:459 to QC_BAD because slow apogee CT flow 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/987) 1:10 to QC_BAD because prior to dive start 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/987) 1:10 454:459 987 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 08:32:23 07 Apr 2016 UTC: INFO: QC.py(180): Changed (17/987) 1:10 454:459 987 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 08:32:23 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 1 stalled points 986 08:32:23 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 08:32:23 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 81 interp_salinity data_points in_between 649 653 % suspect thermal-inertia points 651 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.42 cm/s 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.45 cm/s 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 08:32:23 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (120/987) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 08:32:23 07 Apr 2016 UTC: INFO: QC.py(180): Changed (5/987) 2 4:6 456 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 08:32:23 07 Apr 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/987) 986 to QC_BAD because slow flow in SBE43 08:32:23 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (120/987) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 08:32:23 07 Apr 2016 UTC: INFO: QC.py(180): Changed (5/987) 2 4:6 456 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 08:32:23 07 Apr 2016 UTC: INFO: QC.py(180): Changed (17/987) 1:10 454:459 987 to QC_BAD because changed salinity implies changed optode oxygen 08:32:23 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 08:32:23 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 08:32:24 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 81: Data set size for profile, binned and kkyy files reduced by 17 points, a 1.72% reduction 08:32:24 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.81 08:32:24 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 08:32:24 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 08:32:24 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 08:32:24 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 08:32:24 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 08:33:03 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 08:33:04 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 08:33:04 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 08:33:10 07 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 08:33:10 07 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 08:33:10 07 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 08:33:10 07 Apr 2016 UTC /home/sg146/p1460081.log /home/sg146/p1460081.eng /home/sg146/p1460081.asc /home/sg146/p1460081.pro /home/sg146/p1460081.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 08:33:10 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:33:10 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 08:33:10 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 08:33:10 07 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 08:33:10 07 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 08:33:10 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 08:33:10 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 08:33:10 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 08:33:10 07 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 08:33:10 07 Apr 2016 UTC 12:23:42 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 18099 12:23:42 07 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 12:29:53 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 18215 12:29:53 07 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 12:29:53 07 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 12:29:53 07 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 12:29:53 07 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 12:29:54 07 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160407022953 ] 12:29:54 07 Apr 2016 UTC: INFO: Base.py(1333): PID:18222 12:29:54 07 Apr 2016 UTC: INFO: Base.py(1375): Started processing 12:29:54 07 Apr 2016 UTC 12:29:54 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 12:29:54 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 12:29:54 07 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 12:29:54 07 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 12:29:54 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:82 calls_made:1 call_cycle:0 2212.4510 -15606.6300 04/07/16 12:21:34 UTC) to sdrifter@soest.hawaii.edu 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:29:54 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:82 calls_made:1 call_cycle:0 12:29:54 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:29:54 07 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 12:29:55 07 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 12:29:56 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 12:29:56 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 12:29:56 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 12:29:56 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 12:29:56 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0082lz 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082lz.1a.x00 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082lz.1a.x01 12:29:56 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0082lz.r in process_file_group 12:29:56 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460082.log 12:29:56 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 12:29:56 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0082dz 12:29:56 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0082dz.x05 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.1a.x00 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.1a.x01 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.1a.x02 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.1a.x03 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0082dz.1a.x04 12:29:56 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0082dz.b.1a.x05 12:29:56 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0082dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [82] 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [82] 12:29:56 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460082) for profiles 12:29:56 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 12:29:57 07 Apr 2016 UTC: INFO: QC.py(365): Changed (11/968) 2:4 7:9 464 476 497 966 967 to QC_PROBABLY_BAD because raw temperature spikes 12:29:57 07 Apr 2016 UTC: INFO: QC.py(377): Changed (1/968) 968 to QC_BAD because raw salinity below bound 12:29:57 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/968) 968 to QC_BAD because bad raw salinity indicates raw conductivity issues 12:29:57 07 Apr 2016 UTC: INFO: QC.py(408): Changed (5/968) 4 429 476 497 966 to QC_PROBABLY_BAD because raw conductivity spikes 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (11/968) 2:4 7:9 464 476 497 966 967 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/968) 429 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 12:29:57 07 Apr 2016 UTC: INFO: QC.py(365): Changed (11/968) 2:4 7:9 464 476 497 966 967 to QC_INTERPOLATED because temperature spikes 12:29:57 07 Apr 2016 UTC: INFO: QC.py(377): Changed (1/968) 968 to QC_BAD because salinity below bound 12:29:57 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/968) 968 to QC_BAD because bad salinity indicates conductivity issues 12:29:57 07 Apr 2016 UTC: INFO: QC.py(408): Changed (5/968) 4 429 476 497 966 to QC_INTERPOLATED because conductivity spikes 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/968) 462:467 to QC_BAD because slow apogee CT flow 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/968) 1:10 to QC_BAD because prior to dive start 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/968) 965:967 to QC_BAD because end of climb 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/968) 1:10 462:467 965:968 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (20/968) 1:10 462:467 965:968 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 12:29:57 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/968) 476 497 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/968) 429 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/968) 476 497 to QC_INTERPOLATED because changed corrected temp implies changed speed 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.68 cm/s 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.41 cm/s 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 12:29:57 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (128/968) 385 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (9/968) 2:4 7:9 476 966 967 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 12:29:57 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (128/968) 385 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (9/968) 2:4 7:9 476 966 967 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 12:29:57 07 Apr 2016 UTC: INFO: QC.py(180): Changed (20/968) 1:10 462:467 965:968 to QC_BAD because changed salinity implies changed optode oxygen 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 12:29:57 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 12:29:57 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 82: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.07% reduction 12:29:58 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.82 12:29:58 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 12:29:58 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 12:29:58 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 12:29:58 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 12:29:58 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 12:30:38 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 12:30:38 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 12:30:38 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 12:30:44 07 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 12:30:44 07 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 12:30:44 07 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 12:30:44 07 Apr 2016 UTC /home/sg146/p1460082.log /home/sg146/p1460082.eng /home/sg146/p1460082.asc /home/sg146/p1460082.pro /home/sg146/p1460082.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 12:30:44 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:30:44 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 12:30:44 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 12:30:44 07 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 12:30:44 07 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 12:30:44 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 12:30:44 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 12:30:44 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 12:30:44 07 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 12:30:44 07 Apr 2016 UTC 16:22:17 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 24107 16:22:17 07 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 16:28:11 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 24260 16:28:11 07 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 16:28:11 07 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 16:28:11 07 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 16:28:11 07 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 16:28:11 07 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160407062810 ] 16:28:11 07 Apr 2016 UTC: INFO: Base.py(1333): PID:24267 16:28:11 07 Apr 2016 UTC: INFO: Base.py(1375): Started processing 16:28:11 07 Apr 2016 UTC 16:28:11 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 16:28:11 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 16:28:11 07 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 16:28:11 07 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 16:28:11 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:83 calls_made:2 call_cycle:0 2211.8300 -15608.7600 04/07/16 16:17:52 UTC) to sdrifter@soest.hawaii.edu 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:28:11 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:83 calls_made:2 call_cycle:0 16:28:11 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:28:11 07 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 16:28:13 07 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 16:28:13 07 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 16:28:13 07 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 16:28:13 07 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 16:28:13 07 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 16:28:13 07 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 16:28:13 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 16:28:13 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 16:28:13 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 16:28:13 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 16:28:13 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0083lz 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083lz.1a.x00 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083lz.1a.x01 16:28:13 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0083lz.r in process_file_group 16:28:13 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460083.log 16:28:13 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 16:28:13 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0083dz 16:28:13 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0083dz.x05 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.1a.x00 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.1a.x01 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.1a.x02 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.1a.x03 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0083dz.1a.x04 16:28:13 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0083dz.b.1a.x05 16:28:13 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0083dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 16:28:14 07 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [83] 16:28:14 07 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [83] 16:28:14 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460083) for profiles 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 16:28:14 07 Apr 2016 UTC: INFO: QC.py(365): Changed (4/973) 2 5 426 427 to QC_PROBABLY_BAD because raw temperature spikes 16:28:14 07 Apr 2016 UTC: INFO: QC.py(377): Changed (2/973) 972 973 to QC_BAD because raw salinity below bound 16:28:14 07 Apr 2016 UTC: INFO: QC.py(388): Changed (2/973) 972 973 to QC_BAD because bad raw salinity indicates raw conductivity issues 16:28:14 07 Apr 2016 UTC: INFO: QC.py(408): Changed (4/973) 2 425:427 to QC_PROBABLY_BAD because raw conductivity spikes 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (4/973) 2 5 426 427 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/973) 425 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 16:28:14 07 Apr 2016 UTC: INFO: QC.py(365): Changed (4/973) 2 5 426 427 to QC_INTERPOLATED because temperature spikes 16:28:14 07 Apr 2016 UTC: INFO: QC.py(377): Changed (2/973) 972 973 to QC_BAD because salinity below bound 16:28:14 07 Apr 2016 UTC: INFO: QC.py(388): Changed (2/973) 972 973 to QC_BAD because bad salinity indicates conductivity issues 16:28:14 07 Apr 2016 UTC: INFO: QC.py(408): Changed (4/973) 2 425:427 to QC_INTERPOLATED because conductivity spikes 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/973) 461:466 to QC_BAD because slow apogee CT flow 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/973) 1:10 to QC_BAD because prior to dive start 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/973) 1:10 461:466 972 973 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (18/973) 1:10 461:466 972 973 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 16:28:14 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/973) 426 427 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/973) 425 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (2/973) 426 427 to QC_INTERPOLATED because changed corrected temp implies changed speed 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.69 cm/s 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 16:28:14 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (127/973) 383:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (3/973) 2 5 426 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 16:28:14 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (127/973) 383:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (3/973) 2 5 426 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 16:28:14 07 Apr 2016 UTC: INFO: QC.py(180): Changed (18/973) 1:10 461:466 972 973 to QC_BAD because changed salinity implies changed optode oxygen 16:28:14 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 16:28:14 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 16:28:15 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 83: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.85% reduction 16:28:15 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.83 16:28:15 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 16:28:15 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 16:28:15 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 16:28:15 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 16:28:15 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 16:28:55 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 16:28:56 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 16:28:56 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 16:29:02 07 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 16:29:02 07 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 16:29:02 07 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 16:29:02 07 Apr 2016 UTC /home/sg146/p1460083.log /home/sg146/p1460083.eng /home/sg146/p1460083.asc /home/sg146/p1460083.pro /home/sg146/p1460083.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 16:29:02 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:29:02 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 16:29:02 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 16:29:02 07 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 16:29:02 07 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 16:29:02 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 16:29:02 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 16:29:02 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 16:29:02 07 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 16:29:02 07 Apr 2016 UTC 20:28:50 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 30267 20:28:50 07 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 20:34:42 07 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 30517 20:34:42 07 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 20:34:42 07 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 20:34:42 07 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 20:34:42 07 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 20:34:42 07 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160407103442 ] 20:34:42 07 Apr 2016 UTC: INFO: Base.py(1333): PID:30524 20:34:42 07 Apr 2016 UTC: INFO: Base.py(1375): Started processing 20:34:42 07 Apr 2016 UTC 20:34:42 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 20:34:42 07 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 20:34:42 07 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 20:34:43 07 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 20:34:43 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:84 calls_made:4 call_cycle:0 2211.5170 -15611.0020 04/07/16 20:19:34 UTC) to sdrifter@soest.hawaii.edu 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:34:43 07 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:84 calls_made:4 call_cycle:0 20:34:43 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:34:43 07 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 20:34:44 07 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 20:34:44 07 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 20:34:44 07 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 20:34:44 07 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 20:34:44 07 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 20:34:44 07 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 20:34:45 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 20:34:45 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 20:34:45 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 20:34:45 07 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 20:34:45 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0084lz 20:34:45 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0084lz.x01 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0084lz.1a.x00 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0084lz.b.1a.x01 20:34:45 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0084lz.r in process_file_group 20:34:45 07 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460084.log 20:34:45 07 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 20:34:45 07 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0084dz 20:34:45 07 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0084dz.x05 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.1a.x00 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.1a.x01 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.1a.x02 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.1a.x03 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0084dz.1a.x04 20:34:45 07 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0084dz.b.1a.x05 20:34:45 07 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0084dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 20:34:45 07 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [84] 20:34:45 07 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [84] 20:34:45 07 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460084) for profiles 20:34:45 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 20:34:45 07 Apr 2016 UTC: INFO: QC.py(365): Changed (5/983) 3 4 484 981 982 to QC_PROBABLY_BAD because raw temperature spikes 20:34:45 07 Apr 2016 UTC: INFO: QC.py(377): Changed (3/983) 981:983 to QC_BAD because raw salinity below bound 20:34:45 07 Apr 2016 UTC: INFO: QC.py(388): Changed (1/983) 983 to QC_BAD because bad raw salinity indicates raw conductivity issues 20:34:45 07 Apr 2016 UTC: INFO: QC.py(408): Changed (1/983) 484 to QC_PROBABLY_BAD because raw conductivity spikes 20:34:45 07 Apr 2016 UTC: INFO: QC.py(180): Changed (3/983) 3 4 484 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 20:34:45 07 Apr 2016 UTC: INFO: QC.py(365): Changed (5/983) 3 4 484 981 982 to QC_INTERPOLATED because temperature spikes 20:34:45 07 Apr 2016 UTC: INFO: QC.py(377): Changed (3/983) 981:983 to QC_BAD because salinity below bound 20:34:45 07 Apr 2016 UTC: INFO: QC.py(388): Changed (3/983) 981:983 to QC_BAD because bad salinity indicates conductivity issues 20:34:45 07 Apr 2016 UTC: INFO: QC.py(408): Changed (1/983) 484 to QC_INTERPOLATED because conductivity spikes 20:34:45 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/983) 450:455 to QC_BAD because slow apogee CT flow 20:34:45 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/983) 1:10 to QC_BAD because prior to dive start 20:34:45 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/983) 980 to QC_BAD because end of climb 20:34:45 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/983) 1:10 450:455 980:983 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 20:34:45 07 Apr 2016 UTC: INFO: QC.py(180): Changed (20/983) 1:10 450:455 980:983 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 20:34:46 07 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 20:34:46 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/983) 484 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 20:34:46 07 Apr 2016 UTC: INFO: QC.py(180): Changed (1/983) 484 to QC_INTERPOLATED because changed corrected temp implies changed speed 20:34:46 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 30.68 cm/s 20:34:46 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.39 cm/s 20:34:46 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 20:34:46 07 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (129/983) 370 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 20:34:46 07 Apr 2016 UTC: INFO: QC.py(180): Changed (4/983) 3 4 981 982 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 20:34:46 07 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (129/983) 370 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 20:34:46 07 Apr 2016 UTC: INFO: QC.py(180): Changed (4/983) 3 4 981 982 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 20:34:46 07 Apr 2016 UTC: INFO: QC.py(180): Changed (20/983) 1:10 450:455 980:983 to QC_BAD because changed salinity implies changed optode oxygen 20:34:46 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 20:34:46 07 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 20:34:46 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 84: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 20:34:46 07 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.84 20:34:46 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 20:34:46 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 20:34:46 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 20:34:47 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 20:34:47 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 20:35:27 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 20:35:28 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 20:35:28 07 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 20:35:34 07 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 20:35:34 07 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 20:35:34 07 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 20:35:34 07 Apr 2016 UTC /home/sg146/p1460084.log /home/sg146/p1460084.eng /home/sg146/p1460084.asc /home/sg146/p1460084.pro /home/sg146/p1460084.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 20:35:34 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:35:34 07 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 20:35:34 07 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 20:35:34 07 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 20:35:34 07 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 20:35:34 07 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 20:35:34 07 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 20:35:34 07 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 20:35:34 07 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 20:35:34 07 Apr 2016 UTC 00:33:22 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 4865 00:33:22 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 00:38:14 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 5015 00:38:14 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 00:38:14 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 00:38:14 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 00:38:14 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 00:38:14 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160407143813 ] 00:38:14 08 Apr 2016 UTC: INFO: Base.py(1333): PID:5022 00:38:14 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 00:38:14 08 Apr 2016 UTC 00:38:14 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 00:38:14 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 00:38:14 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 00:38:14 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 00:38:14 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 00:38:14 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:38:14 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:14 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:38:14 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:14 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:38:14 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:14 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:85 calls_made:3 call_cycle:0 2211.0330 -15612.7700 04/08/16 00:26:28 UTC) to sdrifter@soest.hawaii.edu 00:38:15 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:15 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:38:15 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:15 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:38:15 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:15 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:38:15 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:15 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:38:15 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:85 calls_made:3 call_cycle:0 00:38:15 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:38:15 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 00:38:16 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 00:38:16 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 00:38:16 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 00:38:16 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 00:38:16 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 00:38:16 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 00:38:16 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 00:38:16 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 00:38:16 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 00:38:16 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 00:38:16 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0085lz 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085lz.1a.x00 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085lz.1a.x01 00:38:16 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0085lz.r in process_file_group 00:38:16 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460085.log 00:38:16 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 00:38:16 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0085dz 00:38:16 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0085dz.x05 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.1a.x00 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.1a.x01 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.1a.x02 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.1a.x03 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0085dz.1a.x04 00:38:16 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0085dz.b.1a.x05 00:38:16 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0085dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 00:38:17 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [85] 00:38:17 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [85] 00:38:17 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460085) for profiles 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 00:38:17 08 Apr 2016 UTC: INFO: QC.py(365): Changed (7/975) 3 416 429 430 456 508 509 to QC_PROBABLY_BAD because raw temperature spikes 00:38:17 08 Apr 2016 UTC: INFO: QC.py(377): Changed (2/975) 974 975 to QC_BAD because raw salinity below bound 00:38:17 08 Apr 2016 UTC: INFO: QC.py(388): Changed (2/975) 974 975 to QC_BAD because bad raw salinity indicates raw conductivity issues 00:38:17 08 Apr 2016 UTC: INFO: QC.py(408): Changed (7/975) 3 416 429 430 491 508 509 to QC_PROBABLY_BAD because raw conductivity spikes 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/975) 973 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (7/975) 3 416 429 430 456 508 509 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/975) 491 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/975) 973 to QC_BAD because changed raw cond implies changed raw salinity 00:38:17 08 Apr 2016 UTC: INFO: QC.py(365): Changed (7/975) 3 416 429 430 456 508 509 to QC_INTERPOLATED because temperature spikes 00:38:17 08 Apr 2016 UTC: INFO: QC.py(377): Changed (2/975) 974 975 to QC_BAD because salinity below bound 00:38:17 08 Apr 2016 UTC: INFO: QC.py(388): Changed (2/975) 974 975 to QC_BAD because bad salinity indicates conductivity issues 00:38:17 08 Apr 2016 UTC: INFO: QC.py(408): Changed (7/975) 3 416 429 430 491 508 509 to QC_INTERPOLATED because conductivity spikes 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/975) 973 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/975) 454:459 to QC_BAD because slow apogee CT flow 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/975) 1:10 to QC_BAD because prior to dive start 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/975) 1:10 454:459 973:975 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (19/975) 1:10 454:459 973:975 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 00:38:17 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 00:38:17 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 85 interp_salinity data_points in_between 682 689 % suspect thermal-inertia points 684 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (5/975) 416 429 430 508 509 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/975) 491 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (5/975) 416 429 430 508 509 to QC_INTERPOLATED because changed corrected temp implies changed speed 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.81 cm/s 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.31 cm/s 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 00:38:17 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (131/975) 373:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (3/975) 3 416 456 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 00:38:17 08 Apr 2016 UTC: INFO: sbe43_ext.py(293): Changed (1/975) 972 to QC_BAD because slow flow in SBE43 00:38:17 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (131/975) 373:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (3/975) 3 416 456 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (19/975) 1:10 454:459 973:975 to QC_BAD because changed salinity implies changed optode oxygen 00:38:17 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/975) 491 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 00:38:17 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 00:38:18 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 00:38:18 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 85: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.95% reduction 00:38:18 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.85 00:38:18 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 00:38:18 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 00:38:18 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 00:38:18 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 00:38:18 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 00:39:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 00:39:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 00:39:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 00:39:07 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 00:39:07 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 00:39:07 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 00:39:07 08 Apr 2016 UTC /home/sg146/p1460085.log /home/sg146/p1460085.eng /home/sg146/p1460085.asc /home/sg146/p1460085.pro /home/sg146/p1460085.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 00:39:07 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:07 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 00:39:07 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 00:39:07 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 00:39:07 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 00:39:07 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 00:39:07 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 00:39:07 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 00:39:07 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 00:39:07 08 Apr 2016 UTC 04:28:41 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 10901 04:28:41 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 04:33:58 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 11253 04:33:58 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 04:33:58 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 04:33:58 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 04:33:58 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 04:33:58 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160407183357 ] 04:33:58 08 Apr 2016 UTC: INFO: Base.py(1333): PID:11262 04:33:58 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 04:33:58 08 Apr 2016 UTC 04:33:58 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 04:33:58 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 04:33:58 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 04:33:58 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 04:33:58 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:86 calls_made:1 call_cycle:0 2210.0030 -15614.6170 04/08/16 04:26:29 UTC) to sdrifter@soest.hawaii.edu 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:33:58 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:86 calls_made:1 call_cycle:0 04:33:58 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:33:58 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 04:34:00 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 04:34:00 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 04:34:00 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 04:34:00 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 04:34:00 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 04:34:00 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 04:34:00 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 04:34:00 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 04:34:00 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 04:34:00 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 04:34:00 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0086lz 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086lz.1a.x00 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086lz.1a.x01 04:34:00 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0086lz.r in process_file_group 04:34:00 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460086.log 04:34:00 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 04:34:00 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0086dz 04:34:00 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0086dz.x05 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.1a.x00 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.1a.x01 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.1a.x02 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.1a.x03 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0086dz.1a.x04 04:34:00 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0086dz.b.1a.x05 04:34:00 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0086dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 04:34:01 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [86] 04:34:01 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [86] 04:34:01 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460086) for profiles 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 04:34:01 08 Apr 2016 UTC: INFO: QC.py(365): Changed (8/961) 2 4 7 8 176 422 468 495 to QC_PROBABLY_BAD because raw temperature spikes 04:34:01 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/961) 961 to QC_BAD because raw salinity below bound 04:34:01 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/961) 961 to QC_BAD because bad raw salinity indicates raw conductivity issues 04:34:01 08 Apr 2016 UTC: INFO: QC.py(408): Changed (5/961) 176 422 448 468 495 to QC_PROBABLY_BAD because raw conductivity spikes 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/961) 960 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (8/961) 2 4 7 8 176 422 468 495 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/961) 448 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/961) 960 to QC_BAD because changed raw cond implies changed raw salinity 04:34:01 08 Apr 2016 UTC: INFO: QC.py(365): Changed (8/961) 2 4 7 8 176 422 468 495 to QC_INTERPOLATED because temperature spikes 04:34:01 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/961) 961 to QC_BAD because salinity below bound 04:34:01 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/961) 961 to QC_BAD because bad salinity indicates conductivity issues 04:34:01 08 Apr 2016 UTC: INFO: QC.py(408): Changed (5/961) 176 422 448 468 495 to QC_INTERPOLATED because conductivity spikes 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/961) 960 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/961) 456:461 to QC_BAD because slow apogee CT flow 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/961) 1:10 to QC_BAD because prior to dive start 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/961) 959 to QC_BAD because end of climb 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/961) 1:10 456:461 959:961 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (19/961) 1:10 456:461 959:961 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 04:34:01 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 04:34:01 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 86 interp_salinity data_points in_between 209 218 % suspect thermal-inertia points 214 215 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/961) 176 422 468 495 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/961) 448 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/961) 176 422 468 495 to QC_INTERPOLATED because changed corrected temp implies changed speed 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.19 cm/s 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.24 cm/s 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 04:34:01 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (125/961) 378:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (5/961) 2 4 7 8 176 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 04:34:01 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (125/961) 378:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (5/961) 2 4 7 8 176 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 04:34:01 08 Apr 2016 UTC: INFO: QC.py(180): Changed (19/961) 1:10 456:461 959:961 to QC_BAD because changed salinity implies changed optode oxygen 04:34:01 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 04:34:01 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 04:34:02 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 86: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.98% reduction 04:34:02 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.86 04:34:02 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 04:34:02 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 04:34:02 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 04:34:02 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 04:34:02 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 04:34:44 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 04:34:45 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 04:34:45 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 04:34:52 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 04:34:52 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 04:34:52 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 04:34:52 08 Apr 2016 UTC /home/sg146/p1460086.log /home/sg146/p1460086.eng /home/sg146/p1460086.asc /home/sg146/p1460086.pro /home/sg146/p1460086.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 04:34:52 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:34:52 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 04:34:52 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 04:34:52 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 04:34:52 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 04:34:52 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 04:34:52 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 04:34:52 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 04:34:52 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 04:34:52 08 Apr 2016 UTC 07:41:35 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 16349 07:41:35 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 07:46:21 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 16482 07:46:21 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 07:46:21 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 07:46:21 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 07:46:21 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 07:46:21 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160407214620 ] 07:46:21 08 Apr 2016 UTC: INFO: Base.py(1333): PID:16489 07:46:21 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 07:46:21 08 Apr 2016 UTC 07:46:21 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 07:46:21 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 07:46:21 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 07:46:21 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 07:46:21 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:87 calls_made:1 call_cycle:0 2209.3370 -15615.8400 04/08/16 07:39:34 UTC) to sdrifter@soest.hawaii.edu 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:46:21 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:87 calls_made:1 call_cycle:0 07:46:21 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:46:21 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 07:46:23 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 07:46:23 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 07:46:23 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 07:46:23 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 07:46:23 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 07:46:23 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 07:46:23 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 07:46:23 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 07:46:23 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 07:46:23 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 07:46:23 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0087lz 07:46:23 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0087lz.x01 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0087lz.1a.x00 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0087lz.b.1a.x01 07:46:23 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0087lz.r in process_file_group 07:46:23 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460087.log 07:46:23 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 07:46:23 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0087dz 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.1a.x00 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.1a.x01 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.1a.x02 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.1a.x03 07:46:23 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0087dz.1a.x04 07:46:23 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0087dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 07:46:24 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [87] 07:46:24 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [87] 07:46:24 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460087) for profiles 07:46:24 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 07:46:24 08 Apr 2016 UTC: INFO: QC.py(365): Changed (5/820) 2 5 6 8 328 to QC_PROBABLY_BAD because raw temperature spikes 07:46:24 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/820) 820 to QC_BAD because raw salinity below bound 07:46:24 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/820) 820 to QC_BAD because bad raw salinity indicates raw conductivity issues 07:46:24 08 Apr 2016 UTC: INFO: QC.py(408): Changed (2/820) 5 328 to QC_PROBABLY_BAD because raw conductivity spikes 07:46:24 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/820) 819 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 07:46:24 08 Apr 2016 UTC: INFO: QC.py(180): Changed (5/820) 2 5 6 8 328 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 07:46:24 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/820) 819 to QC_BAD because changed raw cond implies changed raw salinity 07:46:24 08 Apr 2016 UTC: INFO: QC.py(365): Changed (5/820) 2 5 6 8 328 to QC_INTERPOLATED because temperature spikes 07:46:24 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/820) 820 to QC_BAD because salinity below bound 07:46:24 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/820) 820 to QC_BAD because bad salinity indicates conductivity issues 07:46:24 08 Apr 2016 UTC: INFO: QC.py(408): Changed (2/820) 5 328 to QC_INTERPOLATED because conductivity spikes 07:46:24 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/820) 819 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 07:46:24 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/820) 298:302 to QC_BAD because slow apogee CT flow 07:46:24 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/820) 1:10 to QC_BAD because prior to dive start 07:46:24 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (17/820) 1:10 298:302 819 820 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 07:46:24 08 Apr 2016 UTC: INFO: QC.py(180): Changed (17/820) 1:10 298:302 819 820 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 07:46:24 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 38 stalled points 676:713 07:46:24 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 1 85 stalled points 651:669 675 714 719:782 07:46:24 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 2 5 stalled points 670:674 07:46:24 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 3 10 stalled points 643:647 650 715:718 07:46:24 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 11.622007 worse than 4.597698 on iteration 3 07:46:25 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 5 3 stalled points 642 648 649 07:46:25 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 7 1 stalled points 641 07:46:25 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 4.941844 worse than 3.887593 on iteration 7 07:46:25 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 9 2 stalled points 639 640 07:46:25 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 5.114255 worse than 4.025188 on iteration 9 07:46:26 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 3.057961 worse than 2.935462 on iteration 12 07:46:26 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 3.840926 worse than 3.057961 on iteration 13 07:46:26 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 3.504590 worse than 3.466253 on iteration 16 07:46:26 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 3.808337 worse than 3.504590 on iteration 17 07:46:27 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 3.610122 worse than 3.594106 on iteration 20 07:46:27 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(965): Unable to converge on TSV corrections 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 20 iterations 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 457 461 % suspect thermal-inertia points 458 459 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 463 467 % suspect thermal-inertia points 464 465 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 469 473 % suspect thermal-inertia points 470:472 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 479 483 % suspect thermal-inertia points 479:483 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 492 495 % suspect thermal-inertia points 493:495 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 517 527 % suspect thermal-inertia points 519:527 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 540 552 % suspect thermal-inertia points 547:551 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 554 563 % suspect thermal-inertia points 558 560:562 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 578 592 % suspect thermal-inertia points 584:590 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 612 612 % suspect thermal-inertia points 612 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 614 617 % suspect thermal-inertia points 614:617 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 619 621 % suspect thermal-inertia points 619:621 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 623 625 % suspect thermal-inertia points 624 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 634 817 % suspect thermal-inertia points 636 638 07:46:27 08 Apr 2016 UTC: INFO: QC.py(180): Changed (17/820) 1:10 298:302 819 820 to QC_BAD because changed corrected salin implies changed speed 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 38 stalled points 676:713 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 1 16 stalled points 655:665 672:675 714 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 2 10 stalled points 651:654 666:671 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 4 68 stalled points 715:782 07:46:27 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 5 1 stalled points 650 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 0.128189 worse than 0.117855 on iteration 15 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 0.200074 worse than 0.128189 on iteration 16 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 0.268805 worse than 0.200074 on iteration 17 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 0.386769 worse than 0.268805 on iteration 18 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 0.572029 worse than 0.386769 on iteration 19 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 0.743569 worse than 0.572029 on iteration 20 07:46:29 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(965): Unable to converge on TSV corrections 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 20 iterations 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 457 461 % suspect thermal-inertia points 458 459 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 463 467 % suspect thermal-inertia points 464 465 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 469 473 % suspect thermal-inertia points 470:472 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 479 483 % suspect thermal-inertia points 479:483 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 492 495 % suspect thermal-inertia points 493:495 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 517 527 % suspect thermal-inertia points 519:527 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 540 552 % suspect thermal-inertia points 547:551 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 554 563 % suspect thermal-inertia points 558 560:562 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 578 592 % suspect thermal-inertia points 584:590 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 612 612 % suspect thermal-inertia points 612 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 614 617 % suspect thermal-inertia points 614:617 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 619 621 % suspect thermal-inertia points 619 620 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 623 625 % suspect thermal-inertia points 624 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 634 637 % suspect thermal-inertia points 636 637 07:46:29 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 87 interp_salinity data_points in_between 643 648 % suspect thermal-inertia points 646:648 07:46:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3453): SUGGESTION: 87 skip_profile % nonconverged 07:46:29 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/820) 328 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 07:46:29 08 Apr 2016 UTC: WARNING: MakeDiveProfiles.py(3489): Unable to find consistent solutions for HDM velocity and salinity! 07:46:29 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/820) 328 to QC_INTERPOLATED because changed corrected temp implies changed speed 07:46:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 23.53 cm/s 07:46:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 6.55 cm/s 07:46:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 07:46:29 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (94/820) 247:250 252:255 257:260 262:265 267:270 272:275 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 07:46:29 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/820) 2 5 6 8 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 07:46:29 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (94/820) 247:250 252:255 257:260 262:265 267:270 272:275 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 07:46:29 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/820) 2 5 6 8 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 07:46:29 08 Apr 2016 UTC: INFO: QC.py(180): Changed (17/820) 1:10 298:302 819 820 to QC_BAD because changed salinity implies changed optode oxygen 07:46:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 07:46:29 08 Apr 2016 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 07:46:29 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 07:46:30 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 87: Data set size for profile, binned and kkyy files reduced by 17 points, a 2.07% reduction 07:46:30 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.87 07:46:30 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 07:46:30 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 07:46:30 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 07:46:30 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 07:46:30 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 07:47:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 07:47:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 07:47:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 07:47:19 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 07:47:19 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 07:47:19 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 07:47:19 08 Apr 2016 UTC /home/sg146/p1460087.log /home/sg146/p1460087.eng /home/sg146/p1460087.asc /home/sg146/p1460087.pro /home/sg146/p1460087.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 07:47:19 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:47:19 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 07:47:19 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 07:47:19 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 07:47:19 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 07:47:19 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 07:47:19 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 07:47:19 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 07:47:19 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 07:47:19 08 Apr 2016 UTC 11:02:40 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 22171 11:02:40 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 11:06:52 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 22250 11:06:52 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 11:06:52 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 11:06:52 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 11:06:52 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 11:06:52 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160408010651 ] 11:06:52 08 Apr 2016 UTC: INFO: Base.py(1333): PID:22257 11:06:52 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 11:06:52 08 Apr 2016 UTC 11:06:52 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 11:06:52 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 11:06:52 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 11:06:52 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 11:06:52 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:88 calls_made:1 call_cycle:0 2210.2390 -15615.2540 04/08/16 11:00:23 UTC) to sdrifter@soest.hawaii.edu 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:06:52 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:88 calls_made:1 call_cycle:0 11:06:52 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:06:52 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 11:06:54 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 11:06:54 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 11:06:54 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 11:06:54 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 11:06:54 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 11:06:54 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 11:06:54 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 11:06:54 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 11:06:54 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 11:06:54 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 11:06:54 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0088lz 11:06:54 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0088lz.x01 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0088lz.1a.x00 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0088lz.b.1a.x01 11:06:54 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0088lz.r in process_file_group 11:06:54 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460088.log 11:06:54 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 11:06:54 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0088dz 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.1a.x00 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.1a.x01 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.1a.x02 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.1a.x03 11:06:54 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0088dz.1a.x04 11:06:54 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0088dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 11:06:55 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [88] 11:06:55 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [88] 11:06:55 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460088) for profiles 11:06:55 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 11:06:55 08 Apr 2016 UTC: INFO: QC.py(365): Changed (5/825) 4 5 9 322 824 to QC_PROBABLY_BAD because raw temperature spikes 11:06:55 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/825) 824 to QC_BAD because raw salinity below bound 11:06:55 08 Apr 2016 UTC: INFO: QC.py(408): Changed (3/825) 3 322 824 to QC_PROBABLY_BAD because raw conductivity spikes 11:06:55 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/825) 825 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 11:06:55 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/825) 4 5 9 322 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 11:06:55 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/825) 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 11:06:55 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/825) 825 to QC_BAD because changed raw cond implies changed raw salinity 11:06:55 08 Apr 2016 UTC: INFO: QC.py(365): Changed (5/825) 4 5 9 322 824 to QC_INTERPOLATED because temperature spikes 11:06:55 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/825) 824 to QC_BAD because salinity below bound 11:06:55 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/825) 824 to QC_BAD because bad salinity indicates conductivity issues 11:06:55 08 Apr 2016 UTC: INFO: QC.py(408): Changed (2/825) 3 322 to QC_INTERPOLATED because conductivity spikes 11:06:55 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/825) 825 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 11:06:55 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (5/825) 311:315 to QC_BAD because slow apogee CT flow 11:06:55 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/825) 1:11 to QC_BAD because prior to dive start 11:06:55 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/825) 1:11 311:315 824 825 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 11:06:55 08 Apr 2016 UTC: INFO: QC.py(180): Changed (18/825) 1:11 311:315 824 825 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 11:06:55 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 23 stalled points 632:654 11:06:55 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 2 2 stalled points 630 631 11:06:55 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 9.283157 worse than 7.275217 on iteration 2 11:06:55 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 4 1 stalled points 629 11:06:55 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(961): New TSV residual 10.815842 worse than 9.024298 on iteration 4 11:06:58 08 Apr 2016 UTC: WARNING: TempSalinityVelocity.py(965): Unable to converge on TSV corrections 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 20 iterations 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 458 464 % suspect thermal-inertia points 461 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 475 478 % suspect thermal-inertia points 477 478 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 480 487 % suspect thermal-inertia points 483 484 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 505 510 % suspect thermal-inertia points 506:510 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 516 528 % suspect thermal-inertia points 516:518 520:523 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 541 545 % suspect thermal-inertia points 543:545 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 547 554 % suspect thermal-inertia points 547:553 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 566 582 % suspect thermal-inertia points 574:582 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 592 596 % suspect thermal-inertia points 594 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 598 601 % suspect thermal-inertia points 599:601 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 603 604 % suspect thermal-inertia points 603 604 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 617 618 % suspect thermal-inertia points 617 618 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 620 621 % suspect thermal-inertia points 620 621 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 623 660 % suspect thermal-inertia points 624:626 628 655:658 11:06:58 08 Apr 2016 UTC: INFO: QC.py(180): Changed (18/825) 1:11 311:315 824 825 to QC_BAD because changed corrected salin implies changed speed 11:06:58 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(947): TSV: 0 23 stalled points 632:654 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 13 iterations 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 481 487 % suspect thermal-inertia points 483 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 505 510 % suspect thermal-inertia points 507 508 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 541 545 % suspect thermal-inertia points 544 545 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 547 554 % suspect thermal-inertia points 549:552 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 566 582 % suspect thermal-inertia points 575 578 579 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 623 626 % suspect thermal-inertia points 624 11:07:00 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 88 interp_salinity data_points in_between 628 661 % suspect thermal-inertia points 628:630 11:07:00 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/825) 322 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 11:07:00 08 Apr 2016 UTC: INFO: QC.py(180): Changed (1/825) 322 to QC_INTERPOLATED because changed corrected temp implies changed speed 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 23.48 cm/s 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 6.04 cm/s 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 11:07:00 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (104/825) 257:260 262:265 267:270 272:275 277:280 282:285 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 11:07:00 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/825) 4 5 9 824 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 11:07:00 08 Apr 2016 UTC: INFO: sbe43_ext.py(293): Changed (221/825) 577:660 687:823 to QC_BAD because slow flow in SBE43 11:07:00 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (104/825) 257:260 262:265 267:270 272:275 277:280 282:285 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 11:07:00 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/825) 4 5 9 824 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 11:07:00 08 Apr 2016 UTC: INFO: QC.py(180): Changed (18/825) 1:11 311:315 824 825 to QC_BAD because changed salinity implies changed optode oxygen 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 11:07:00 08 Apr 2016 UTC: WARNING: MakeDiveProfiles.py(3600): Significant up/downwelling detected; DAC suspect. 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 11:07:00 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 88: Data set size for profile, binned and kkyy files reduced by 18 points, a 2.18% reduction 11:07:00 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.88 11:07:00 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.88 11:07:00 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 11:07:00 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 11:07:00 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 11:07:00 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 11:07:43 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 11:07:43 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 11:07:43 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 11:07:50 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 11:07:50 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 11:07:50 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 11:07:50 08 Apr 2016 UTC /home/sg146/p1460088.log /home/sg146/p1460088.eng /home/sg146/p1460088.asc /home/sg146/p1460088.pro /home/sg146/p1460088.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 11:07:50 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:07:50 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 11:07:50 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 11:07:50 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 11:07:50 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 11:07:50 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 11:07:50 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 11:07:50 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 11:07:50 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 11:07:50 08 Apr 2016 UTC 15:02:04 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28728 15:02:04 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 15:09:08 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28898 15:09:08 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 15:09:08 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 15:09:08 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 15:09:08 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 15:09:08 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160408050908 ] 15:09:08 08 Apr 2016 UTC: INFO: Base.py(1333): PID:28905 15:09:08 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 15:09:08 08 Apr 2016 UTC 15:09:08 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 15:09:08 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 15:09:08 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 15:09:09 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 15:09:09 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:89 calls_made:3 call_cycle:0 2211.2730 -15614.8880 04/08/16 14:55:29 UTC) to sdrifter@soest.hawaii.edu 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:09:09 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:89 calls_made:3 call_cycle:0 15:09:09 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:09:09 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 15:09:10 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 15:09:11 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 15:09:11 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 15:09:11 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 15:09:11 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 15:09:11 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0089lz 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089lz.1a.x00 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089lz.1a.x01 15:09:11 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0089lz.r in process_file_group 15:09:11 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460089.log 15:09:11 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 15:09:11 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0089dz 15:09:11 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0089dz.x05 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.1a.x00 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.1a.x01 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.1a.x02 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.1a.x03 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0089dz.1a.x04 15:09:11 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0089dz.b.1a.x05 15:09:11 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0089dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [89] 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [89] 15:09:11 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460089) for profiles 15:09:11 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 15:09:12 08 Apr 2016 UTC: INFO: QC.py(365): Changed (10/967) 5 9 258 259 399 400 486 491 965 966 to QC_PROBABLY_BAD because raw temperature spikes 15:09:12 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/967) 964 to QC_BAD because raw salinity below bound 15:09:12 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/967) 964 to QC_BAD because bad raw salinity indicates raw conductivity issues 15:09:12 08 Apr 2016 UTC: INFO: QC.py(408): Changed (8/967) 2 6 399 400 421 446 486 491 to QC_PROBABLY_BAD because raw conductivity spikes 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (10/967) 5 9 258 259 399 400 486 491 965 966 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (4/967) 2 6 421 446 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 15:09:12 08 Apr 2016 UTC: INFO: QC.py(365): Changed (10/967) 5 9 258 259 399 400 486 491 965 966 to QC_INTERPOLATED because temperature spikes 15:09:12 08 Apr 2016 UTC: INFO: QC.py(377): Changed (1/967) 964 to QC_BAD because salinity below bound 15:09:12 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/967) 964 to QC_BAD because bad salinity indicates conductivity issues 15:09:12 08 Apr 2016 UTC: INFO: QC.py(408): Changed (8/967) 2 6 399 400 421 446 486 491 to QC_INTERPOLATED because conductivity spikes 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/967) 450:455 to QC_BAD because slow apogee CT flow 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/967) 1:10 to QC_BAD because prior to dive start 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/967) 965:967 to QC_BAD because end of climb 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/967) 1:10 450:455 964:967 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (20/967) 1:10 450:455 964:967 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 15:09:12 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (6/967) 258 259 399 400 486 491 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (2/967) 421 446 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (6/967) 258 259 399 400 486 491 to QC_INTERPOLATED because changed corrected temp implies changed speed 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.35 cm/s 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.26 cm/s 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 15:09:12 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/967) 374 375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (8/967) 5 9 258 259 486 491 965 966 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 15:09:12 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (126/967) 374 375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (8/967) 5 9 258 259 486 491 965 966 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (20/967) 1:10 450:455 964:967 to QC_BAD because changed salinity implies changed optode oxygen 15:09:12 08 Apr 2016 UTC: INFO: QC.py(180): Changed (2/967) 421 446 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 15:09:12 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 15:09:12 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 15:09:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 89: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.07% reduction 15:09:13 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.89 15:09:13 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.89 15:09:13 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 15:09:13 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 15:09:13 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 15:09:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 15:09:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 15:09:56 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 15:09:56 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 15:09:56 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 15:10:03 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 15:10:03 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 15:10:03 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 15:10:03 08 Apr 2016 UTC /home/sg146/p1460089.log /home/sg146/p1460089.eng /home/sg146/p1460089.asc /home/sg146/p1460089.pro /home/sg146/p1460089.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 15:10:03 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:10:03 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 15:10:03 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 15:10:03 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 15:10:03 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 15:10:03 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 15:10:03 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 15:10:03 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 15:10:03 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 15:10:03 08 Apr 2016 UTC 19:04:57 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2651 19:04:57 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 19:09:43 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2791 19:09:43 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 19:09:43 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 19:09:43 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 19:09:43 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 19:09:43 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160408090942 ] 19:09:43 08 Apr 2016 UTC: INFO: Base.py(1333): PID:2798 19:09:43 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 19:09:43 08 Apr 2016 UTC 19:09:43 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 19:09:43 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 19:09:43 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 19:09:44 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 19:09:44 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:90 calls_made:2 call_cycle:0 2212.5470 -15614.2450 04/08/16 19:00:23 UTC) to sdrifter@soest.hawaii.edu 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:09:44 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:90 calls_made:2 call_cycle:0 19:09:44 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:09:44 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 19:09:45 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 19:09:45 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 19:09:45 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 19:09:45 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 19:09:45 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 19:09:45 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 19:09:45 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 19:09:45 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 19:09:45 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 19:09:45 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 19:09:45 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0090lz 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090lz.1a.x00 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090lz.1a.x01 19:09:45 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0090lz.r in process_file_group 19:09:45 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460090.log 19:09:45 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 19:09:45 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0090dz 19:09:45 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0090dz.x05 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.1a.x00 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.1a.x01 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.1a.x02 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.1a.x03 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0090dz.1a.x04 19:09:45 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0090dz.b.1a.x05 19:09:45 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0090dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 19:09:46 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [90] 19:09:46 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [90] 19:09:46 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460090) for profiles 19:09:46 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 19:09:46 08 Apr 2016 UTC: INFO: QC.py(365): Changed (8/983) 3:5 7:9 466 982 to QC_PROBABLY_BAD because raw temperature spikes 19:09:46 08 Apr 2016 UTC: INFO: QC.py(377): Changed (2/983) 982 983 to QC_BAD because raw salinity below bound 19:09:46 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/983) 983 to QC_BAD because bad raw salinity indicates raw conductivity issues 19:09:46 08 Apr 2016 UTC: INFO: QC.py(408): Changed (3/983) 3 4 8 to QC_PROBABLY_BAD because raw conductivity spikes 19:09:46 08 Apr 2016 UTC: INFO: QC.py(180): Changed (7/983) 3:5 7:9 466 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 19:09:46 08 Apr 2016 UTC: INFO: QC.py(365): Changed (8/983) 3:5 7:9 466 982 to QC_INTERPOLATED because temperature spikes 19:09:46 08 Apr 2016 UTC: INFO: QC.py(377): Changed (2/983) 982 983 to QC_BAD because salinity below bound 19:09:46 08 Apr 2016 UTC: INFO: QC.py(388): Changed (2/983) 982 983 to QC_BAD because bad salinity indicates conductivity issues 19:09:46 08 Apr 2016 UTC: INFO: QC.py(408): Changed (3/983) 3 4 8 to QC_INTERPOLATED because conductivity spikes 19:09:46 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/983) 464:469 to QC_BAD because slow apogee CT flow 19:09:46 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/983) 1:11 to QC_BAD because prior to dive start 19:09:46 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/983) 981 to QC_BAD because end of climb 19:09:46 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/983) 1:11 464:469 981:983 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 19:09:46 08 Apr 2016 UTC: INFO: QC.py(180): Changed (20/983) 1:11 464:469 981:983 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 19:09:47 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.82 cm/s 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.41 cm/s 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 19:09:47 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (128/983) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 19:09:47 08 Apr 2016 UTC: INFO: QC.py(180): Changed (8/983) 3:5 7:9 466 982 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 19:09:47 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (128/983) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 19:09:47 08 Apr 2016 UTC: INFO: QC.py(180): Changed (8/983) 3:5 7:9 466 982 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 19:09:47 08 Apr 2016 UTC: INFO: QC.py(180): Changed (20/983) 1:11 464:469 981:983 to QC_BAD because changed salinity implies changed optode oxygen 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 19:09:47 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 90: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 19:09:47 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.90 19:09:47 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.90 19:09:47 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 19:09:47 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 19:09:47 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 19:09:47 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 19:10:31 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 19:10:31 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 19:10:31 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 19:10:39 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 19:10:39 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 19:10:39 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 19:10:39 08 Apr 2016 UTC /home/sg146/p1460090.log /home/sg146/p1460090.eng /home/sg146/p1460090.asc /home/sg146/p1460090.pro /home/sg146/p1460090.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 19:10:39 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:10:39 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 19:10:39 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 19:10:39 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 19:10:39 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 19:10:39 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 19:10:39 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 19:10:39 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 19:10:39 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 19:10:39 08 Apr 2016 UTC 22:58:37 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 8995 22:58:37 08 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 23:03:20 08 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 9271 23:03:20 08 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 23:03:20 08 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 23:03:20 08 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 23:03:20 08 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 23:03:20 08 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160408130319 ] 23:03:20 08 Apr 2016 UTC: INFO: Base.py(1333): PID:9278 23:03:20 08 Apr 2016 UTC: INFO: Base.py(1375): Started processing 23:03:20 08 Apr 2016 UTC 23:03:20 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 23:03:20 08 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 23:03:20 08 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 23:03:20 08 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 23:03:20 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 23:03:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:03:20 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 23:03:20 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:03:20 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:20 08 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:91 calls_made:1 call_cycle:0 2213.8770 -15613.7020 04/08/16 22:56:35 UTC) to sdrifter@soest.hawaii.edu 23:03:25 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:25 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:03:25 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:25 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:03:25 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:25 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:03:25 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:25 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:03:25 08 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:91 calls_made:1 call_cycle:0 23:03:25 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:03:25 08 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 23:03:27 08 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 23:03:27 08 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 23:03:27 08 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 23:03:27 08 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 23:03:27 08 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 23:03:27 08 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 23:03:27 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 23:03:27 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 23:03:27 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 23:03:27 08 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 23:03:27 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0091lz 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091lz.1a.x00 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091lz.1a.x01 23:03:27 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0091lz.r in process_file_group 23:03:27 08 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460091.log 23:03:27 08 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 23:03:27 08 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0091dz 23:03:27 08 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0091dz.x05 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.1a.x00 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.1a.x01 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.1a.x02 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.1a.x03 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0091dz.1a.x04 23:03:27 08 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0091dz.b.1a.x05 23:03:27 08 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0091dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 23:03:28 08 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [91] 23:03:28 08 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [91] 23:03:28 08 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460091) for profiles 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 23:03:28 08 Apr 2016 UTC: INFO: QC.py(365): Changed (3/966) 4 964 965 to QC_PROBABLY_BAD because raw temperature spikes 23:03:28 08 Apr 2016 UTC: INFO: QC.py(377): Changed (2/966) 965 966 to QC_BAD because raw salinity below bound 23:03:28 08 Apr 2016 UTC: INFO: QC.py(388): Changed (1/966) 966 to QC_BAD because bad raw salinity indicates raw conductivity issues 23:03:28 08 Apr 2016 UTC: INFO: QC.py(180): Changed (2/966) 4 964 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 23:03:28 08 Apr 2016 UTC: INFO: QC.py(365): Changed (3/966) 4 964 965 to QC_INTERPOLATED because temperature spikes 23:03:28 08 Apr 2016 UTC: INFO: QC.py(377): Changed (2/966) 965 966 to QC_BAD because salinity below bound 23:03:28 08 Apr 2016 UTC: INFO: QC.py(388): Changed (2/966) 965 966 to QC_BAD because bad salinity indicates conductivity issues 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/966) 456:461 to QC_BAD because slow apogee CT flow 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/966) 1:10 to QC_BAD because prior to dive start 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/966) 963 964 to QC_BAD because end of climb 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/966) 1:10 456:461 963:966 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 23:03:28 08 Apr 2016 UTC: INFO: QC.py(180): Changed (20/966) 1:10 456:461 963:966 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 23:03:28 08 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.44 cm/s 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.38 cm/s 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 23:03:28 08 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (122/966) 380 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 23:03:28 08 Apr 2016 UTC: INFO: QC.py(180): Changed (3/966) 4 964 965 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 23:03:28 08 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (123/966) 380 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 23:03:28 08 Apr 2016 UTC: INFO: QC.py(180): Changed (3/966) 4 964 965 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 23:03:28 08 Apr 2016 UTC: INFO: QC.py(180): Changed (20/966) 1:10 456:461 963:966 to QC_BAD because changed salinity implies changed optode oxygen 23:03:28 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 23:03:28 08 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 23:03:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 91: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.07% reduction 23:03:29 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.91 23:03:29 08 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./targets to ./targets.91 23:03:29 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 23:03:29 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 23:03:29 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 23:03:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 23:03:29 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 23:04:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 23:04:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 23:04:13 08 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 23:04:20 08 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 23:04:20 08 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 23:04:20 08 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 23:04:20 08 Apr 2016 UTC /home/sg146/p1460091.log /home/sg146/p1460091.eng /home/sg146/p1460091.asc /home/sg146/p1460091.pro /home/sg146/p1460091.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 23:04:20 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:20 08 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 23:04:20 08 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 23:04:20 08 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 23:04:20 08 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 23:04:20 08 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 23:04:20 08 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 23:04:20 08 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 23:04:20 08 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 23:04:20 08 Apr 2016 UTC 02:55:07 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15311 02:55:08 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {T} 02:59:51 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15461 02:59:51 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:59:51 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:59:51 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:59:51 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:59:51 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160408165951 ] 02:59:51 09 Apr 2016 UTC: INFO: Base.py(1333): PID:15468 02:59:51 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 02:59:51 09 Apr 2016 UTC 02:59:51 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:59:51 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:59:51 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:59:52 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:59:52 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:92 calls_made:1 call_cycle:0 2215.3420 -15613.3070 04/09/16 02:52:59 UTC) to sdrifter@soest.hawaii.edu 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:59:52 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:92 calls_made:1 call_cycle:0 02:59:52 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:59:52 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:59:53 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:59:54 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:59:54 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:59:54 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:59:54 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:59:54 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:59:54 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 02:59:54 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 02:59:54 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 02:59:54 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 02:59:54 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0092lz 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092lz.1a.x00 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092lz.1a.x01 02:59:54 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0092lz.r in process_file_group 02:59:54 09 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460092.log 02:59:54 09 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 02:59:54 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0092dz 02:59:54 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0092dz.x05 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.1a.x00 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.1a.x01 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.1a.x02 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.1a.x03 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0092dz.1a.x04 02:59:54 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0092dz.b.1a.x05 02:59:54 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0092dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 02:59:55 09 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [92] 02:59:55 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [92] 02:59:55 09 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460092) for profiles 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 02:59:55 09 Apr 2016 UTC: INFO: QC.py(365): Changed (8/985) 2 4 5 424 427 463 982 983 to QC_PROBABLY_BAD because raw temperature spikes 02:59:55 09 Apr 2016 UTC: INFO: QC.py(377): Changed (2/985) 982 984 to QC_BAD because raw salinity below bound 02:59:55 09 Apr 2016 UTC: INFO: QC.py(388): Changed (1/985) 984 to QC_BAD because bad raw salinity indicates raw conductivity issues 02:59:55 09 Apr 2016 UTC: INFO: QC.py(408): Changed (4/985) 424 427 982 983 to QC_PROBABLY_BAD because raw conductivity spikes 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/985) 985 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (7/985) 2 4 5 424 427 463 983 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/985) 985 to QC_BAD because changed raw cond implies changed raw salinity 02:59:55 09 Apr 2016 UTC: INFO: QC.py(365): Changed (8/985) 2 4 5 424 427 463 982 983 to QC_INTERPOLATED because temperature spikes 02:59:55 09 Apr 2016 UTC: INFO: QC.py(377): Changed (2/985) 982 984 to QC_BAD because salinity below bound 02:59:55 09 Apr 2016 UTC: INFO: QC.py(388): Changed (2/985) 982 984 to QC_BAD because bad salinity indicates conductivity issues 02:59:55 09 Apr 2016 UTC: INFO: QC.py(408): Changed (2/985) 424 427 to QC_INTERPOLATED because conductivity spikes 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/985) 985 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/985) 461:466 to QC_BAD because slow apogee CT flow 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/985) 1:10 to QC_BAD because prior to dive start 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/985) 983 to QC_BAD because end of climb 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/985) 1:10 461:466 982:985 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (20/985) 1:10 461:466 982:985 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 02:59:55 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:59:55 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 92 interp_salinity data_points in_between 683 693 % suspect thermal-inertia points 688 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (2/985) 424 427 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (2/985) 424 427 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.17 cm/s 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.47 cm/s 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:59:55 09 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (124/985) 385 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (5/985) 2 4 5 982 983 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:59:55 09 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (124/985) 385 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (5/985) 2 4 5 982 983 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:59:55 09 Apr 2016 UTC: INFO: QC.py(180): Changed (20/985) 1:10 461:466 982:985 to QC_BAD because changed salinity implies changed optode oxygen 02:59:55 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:59:55 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 02:59:56 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 92: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 02:59:56 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.92 02:59:56 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:59:56 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:59:56 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:59:56 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 02:59:56 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 03:00:41 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 03:00:41 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 03:00:41 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 03:00:48 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 03:00:48 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 03:00:48 09 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 03:00:48 09 Apr 2016 UTC /home/sg146/p1460092.log /home/sg146/p1460092.eng /home/sg146/p1460092.asc /home/sg146/p1460092.pro /home/sg146/p1460092.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 03:00:48 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:00:48 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 03:00:48 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 03:00:48 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 03:00:48 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 03:00:48 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 03:00:48 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 03:00:48 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 03:00:48 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 03:00:48 09 Apr 2016 UTC 06:51:01 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 21186 06:51:01 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:56:17 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 21325 06:56:17 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:56:17 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:56:17 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:56:17 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:56:17 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160408205616 ] 06:56:17 09 Apr 2016 UTC: INFO: Base.py(1333): PID:21332 06:56:17 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 06:56:17 09 Apr 2016 UTC 06:56:17 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:56:17 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:56:17 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:56:17 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:56:17 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:56:17 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:56:17 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:17 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:56:17 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:17 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:56:17 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:17 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:93 calls_made:1 call_cycle:0 2216.6990 -15612.6590 04/09/16 06:48:52 UTC) to sdrifter@soest.hawaii.edu 06:56:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:56:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:56:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:56:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:56:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:93 calls_made:1 call_cycle:0 06:56:23 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:56:23 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:56:24 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:56:24 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:56:24 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:56:24 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:56:24 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:56:24 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:56:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 06:56:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 06:56:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 06:56:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 06:56:24 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0093lz 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093lz.1a.x00 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093lz.1a.x01 06:56:24 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0093lz.r in process_file_group 06:56:24 09 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460093.log 06:56:24 09 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 06:56:24 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0093dz 06:56:24 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0093dz.x05 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.1a.x00 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.1a.x01 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.1a.x02 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.1a.x03 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0093dz.1a.x04 06:56:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0093dz.b.1a.x05 06:56:24 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0093dz.r in process_file_group 06:56:24 09 Apr 2016 UTC: INFO: BaseGZip.py(195): Bad CRC and file len and ./sg0093dz.r has a trailing 1a - trying to recalc the crc and file length without it /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 06:56:25 09 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [93] 06:56:25 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [93] 06:56:25 09 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460093) for profiles 06:56:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 06:56:25 09 Apr 2016 UTC: INFO: QC.py(365): Changed (5/988) 4 7 461 497 498 to QC_PROBABLY_BAD because raw temperature spikes 06:56:25 09 Apr 2016 UTC: INFO: QC.py(408): Changed (1/988) 497 to QC_PROBABLY_BAD because raw conductivity spikes 06:56:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/988) 988 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 06:56:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (5/988) 4 7 461 497 498 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:56:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/988) 988 to QC_BAD because changed raw cond implies changed raw salinity 06:56:25 09 Apr 2016 UTC: INFO: QC.py(365): Changed (5/988) 4 7 461 497 498 to QC_INTERPOLATED because temperature spikes 06:56:25 09 Apr 2016 UTC: INFO: QC.py(408): Changed (1/988) 497 to QC_INTERPOLATED because conductivity spikes 06:56:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/988) 988 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 06:56:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/988) 459:464 to QC_BAD because slow apogee CT flow 06:56:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/988) 1:11 to QC_BAD because prior to dive start 06:56:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/988) 1:11 459:464 988 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:56:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (18/988) 1:11 459:464 988 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 06:56:26 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:56:26 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 93 interp_salinity data_points in_between 207 210 % suspect thermal-inertia points 208 06:56:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (2/988) 497 498 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:56:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (2/988) 497 498 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.67 cm/s 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.25 cm/s 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:56:26 09 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (122/988) 384 385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:56:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/988) 4 7 461 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:56:26 09 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (122/988) 384 385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 06:56:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/988) 4 7 461 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:56:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (18/988) 1:11 459:464 988 to QC_BAD because changed salinity implies changed optode oxygen 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:56:26 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 93: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.82% reduction 06:56:26 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.93 06:56:26 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:56:26 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:56:26 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 06:56:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 06:57:11 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 06:57:12 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 06:57:12 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 06:57:19 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:57:19 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:57:19 09 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:57:19 09 Apr 2016 UTC /home/sg146/p1460093.log /home/sg146/p1460093.eng /home/sg146/p1460093.asc /home/sg146/p1460093.pro /home/sg146/p1460093.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 06:57:19 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:57:19 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:57:19 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:57:19 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:57:19 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:57:19 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:57:19 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:57:19 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:57:19 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 06:57:19 09 Apr 2016 UTC 10:47:47 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28687 10:47:48 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:52:21 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28890 10:52:21 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:52:21 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:52:21 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:52:21 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:52:21 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409005221 ] 10:52:21 09 Apr 2016 UTC: INFO: Base.py(1333): PID:28897 10:52:21 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 10:52:21 09 Apr 2016 UTC 10:52:21 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:52:21 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:52:21 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:52:22 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:52:22 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:94 calls_made:1 call_cycle:0 2218.4100 -15611.4650 04/09/16 10:45:28 UTC) to sdrifter@soest.hawaii.edu 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:52:22 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:94 calls_made:1 call_cycle:0 10:52:22 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:52:22 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:52:23 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:52:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 10:52:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 10:52:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 10:52:24 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 10:52:24 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0094lz 10:52:24 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0094lz.x01 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0094lz.1a.x00 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0094lz.b.1a.x01 10:52:24 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0094lz.r in process_file_group 10:52:24 09 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460094.log 10:52:24 09 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 10:52:24 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0094dz 10:52:24 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0094dz.x05 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.1a.x00 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.1a.x01 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.1a.x02 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.1a.x03 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0094dz.1a.x04 10:52:24 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0094dz.b.1a.x05 10:52:24 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0094dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [94] 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [94] 10:52:24 09 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460094) for profiles 10:52:24 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 10:52:25 09 Apr 2016 UTC: INFO: QC.py(365): Changed (7/973) 2 4 5 420 494 495 972 to QC_PROBABLY_BAD because raw temperature spikes 10:52:25 09 Apr 2016 UTC: INFO: QC.py(377): Changed (2/973) 971 972 to QC_BAD because raw salinity below bound 10:52:25 09 Apr 2016 UTC: INFO: QC.py(388): Changed (1/973) 971 to QC_BAD because bad raw salinity indicates raw conductivity issues 10:52:25 09 Apr 2016 UTC: INFO: QC.py(408): Changed (4/973) 420 494 495 972 to QC_PROBABLY_BAD because raw conductivity spikes 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/973) 973 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (6/973) 2 4 5 420 494 495 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/973) 973 to QC_BAD because changed raw cond implies changed raw salinity 10:52:25 09 Apr 2016 UTC: INFO: QC.py(365): Changed (7/973) 2 4 5 420 494 495 972 to QC_INTERPOLATED because temperature spikes 10:52:25 09 Apr 2016 UTC: INFO: QC.py(377): Changed (2/973) 971 972 to QC_BAD because salinity below bound 10:52:25 09 Apr 2016 UTC: INFO: QC.py(388): Changed (2/973) 971 972 to QC_BAD because bad salinity indicates conductivity issues 10:52:25 09 Apr 2016 UTC: INFO: QC.py(408): Changed (3/973) 420 494 495 to QC_INTERPOLATED because conductivity spikes 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/973) 973 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/973) 455:460 to QC_BAD because slow apogee CT flow 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/973) 1:10 to QC_BAD because prior to dive start 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/973) 1:10 455:460 971:973 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (19/973) 1:10 455:460 971:973 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 10:52:25 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:52:25 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 94 interp_salinity data_points in_between 673 677 % suspect thermal-inertia points 676 10:52:25 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 94 interp_salinity data_points in_between 758 764 % suspect thermal-inertia points 759 760 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/973) 420 494 495 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/973) 420 494 495 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.75 cm/s 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:52:25 09 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/973) 379 380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/973) 2 4 5 972 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:52:25 09 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (126/973) 379 380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/973) 2 4 5 972 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:52:25 09 Apr 2016 UTC: INFO: QC.py(180): Changed (19/973) 1:10 455:460 971:973 to QC_BAD because changed salinity implies changed optode oxygen 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:52:25 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 10:52:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 94: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.95% reduction 10:52:26 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.94 10:52:26 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:52:26 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:52:26 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:52:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 10:52:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 10:53:11 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 10:53:12 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 10:53:12 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 10:53:19 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:53:19 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:53:19 09 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:53:19 09 Apr 2016 UTC /home/sg146/p1460094.log /home/sg146/p1460094.eng /home/sg146/p1460094.asc /home/sg146/p1460094.pro /home/sg146/p1460094.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 10:53:19 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:53:19 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:53:19 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:53:19 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:53:19 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:53:19 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:53:19 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:53:19 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:53:19 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 10:53:19 09 Apr 2016 UTC 14:45:06 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2733 14:45:06 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:49:23 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2955 14:49:23 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:49:23 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:49:23 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:49:23 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:49:23 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409044922 ] 14:49:23 09 Apr 2016 UTC: INFO: Base.py(1333): PID:2962 14:49:23 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 14:49:23 09 Apr 2016 UTC 14:49:23 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:49:23 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:49:23 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:49:23 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:49:23 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:49:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:49:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:49:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:23 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:49:23 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:23 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:95 calls_made:3 call_cycle:0 2219.6330 -15610.4600 04/09/16 14:38:22 UTC) to sdrifter@soest.hawaii.edu 14:49:24 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:24 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:49:24 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:24 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:49:24 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:24 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:49:24 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:24 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:49:24 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:95 calls_made:3 call_cycle:0 14:49:24 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:49:24 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:49:25 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:49:25 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:49:25 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:49:25 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:49:25 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:49:25 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:49:25 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 14:49:25 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 14:49:25 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 14:49:25 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 14:49:25 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0095lz 14:49:25 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0095lz.x01 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095lz.1a.x00 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0095lz.b.1a.x01 14:49:25 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0095lz.r in process_file_group 14:49:25 09 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460095.log 14:49:25 09 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:49:25 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0095dz 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.1a.x00 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.1a.x01 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.1a.x02 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.1a.x03 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.1a.x04 14:49:25 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0095dz.1a.x05 14:49:25 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0095dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 14:49:26 09 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [95] 14:49:26 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [95] 14:49:26 09 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460095) for profiles 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 14:49:26 09 Apr 2016 UTC: INFO: QC.py(365): Changed (4/955) 3:5 423 to QC_PROBABLY_BAD because raw temperature spikes 14:49:26 09 Apr 2016 UTC: INFO: QC.py(408): Changed (2/955) 423 954 to QC_PROBABLY_BAD because raw conductivity spikes 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/955) 955 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 14:49:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/955) 3:5 423 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:49:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/955) 954 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 14:49:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/955) 955 to QC_BAD because changed raw cond implies changed raw salinity 14:49:26 09 Apr 2016 UTC: INFO: QC.py(365): Changed (4/955) 3:5 423 to QC_INTERPOLATED because temperature spikes 14:49:26 09 Apr 2016 UTC: INFO: QC.py(408): Changed (2/955) 423 954 to QC_INTERPOLATED because conductivity spikes 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/955) 955 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/955) 452:457 to QC_BAD because slow apogee CT flow 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/955) 1:10 to QC_BAD because prior to dive start 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/955) 953 954 to QC_BAD because end of climb 14:49:26 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/955) 1:10 452:457 953:955 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:49:26 09 Apr 2016 UTC: INFO: QC.py(180): Changed (19/955) 1:10 452:457 953:955 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 14:49:27 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 14:49:27 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 95 interp_salinity data_points in_between 680 689 % suspect thermal-inertia points 683 14:49:27 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/955) 423 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:49:27 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/955) 423 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.37 cm/s 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.26 cm/s 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:49:27 09 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (125/955) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:49:27 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/955) 3:5 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:49:27 09 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (125/955) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 14:49:27 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/955) 3:5 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:49:27 09 Apr 2016 UTC: INFO: QC.py(180): Changed (19/955) 1:10 452:457 953:955 to QC_BAD because changed salinity implies changed optode oxygen 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:49:27 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 95: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.99% reduction 14:49:27 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.95 14:49:27 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:49:27 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:49:27 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 14:49:27 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 14:50:13 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 14:50:14 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 14:50:14 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 14:50:21 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:50:21 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:50:21 09 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:50:21 09 Apr 2016 UTC /home/sg146/p1460095.log /home/sg146/p1460095.eng /home/sg146/p1460095.asc /home/sg146/p1460095.pro /home/sg146/p1460095.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 14:50:21 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:21 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:50:21 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:21 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:50:21 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:50:21 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:50:21 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:50:21 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:50:21 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 14:50:21 09 Apr 2016 UTC 18:42:40 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 8893 18:42:40 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:47:33 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 9193 18:47:33 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:47:33 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 18:47:33 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 18:47:33 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:47:33 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409084732 ] 18:47:33 09 Apr 2016 UTC: INFO: Base.py(1333): PID:9200 18:47:33 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 18:47:33 09 Apr 2016 UTC 18:47:33 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 18:47:33 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 18:47:33 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 18:47:34 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 18:47:34 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:96 calls_made:1 call_cycle:0 2220.9670 -15609.5970 04/09/16 18:40:29 UTC) to sdrifter@soest.hawaii.edu 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:47:34 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:96 calls_made:1 call_cycle:0 18:47:34 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:47:34 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:47:35 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:47:35 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:47:35 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 18:47:35 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:47:35 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:47:35 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 18:47:35 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 18:47:35 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 18:47:36 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 18:47:36 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 18:47:36 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0096lz 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096lz.1a.x00 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096lz.1a.x01 18:47:36 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0096lz.r in process_file_group 18:47:36 09 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460096.log 18:47:36 09 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 18:47:36 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0096dz 18:47:36 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0096dz.x05 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.1a.x00 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.1a.x01 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.1a.x02 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.1a.x03 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0096dz.1a.x04 18:47:36 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0096dz.b.1a.x05 18:47:36 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0096dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 18:47:36 09 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [96] 18:47:36 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [96] 18:47:36 09 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460096) for profiles 18:47:36 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 18:47:36 09 Apr 2016 UTC: INFO: QC.py(365): Changed (5/986) 4 7 459 460 985 to QC_PROBABLY_BAD because raw temperature spikes 18:47:36 09 Apr 2016 UTC: INFO: QC.py(377): Changed (2/986) 985 986 to QC_BAD because raw salinity below bound 18:47:36 09 Apr 2016 UTC: INFO: QC.py(388): Changed (1/986) 986 to QC_BAD because bad raw salinity indicates raw conductivity issues 18:47:36 09 Apr 2016 UTC: INFO: QC.py(408): Changed (4/986) 4 170 404 458 to QC_PROBABLY_BAD because raw conductivity spikes 18:47:36 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/986) 984 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 18:47:36 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/986) 4 7 459 460 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:47:36 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/986) 170 404 458 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:47:36 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/986) 984 to QC_BAD because changed raw cond implies changed raw salinity 18:47:36 09 Apr 2016 UTC: INFO: QC.py(365): Changed (5/986) 4 7 459 460 985 to QC_INTERPOLATED because temperature spikes 18:47:36 09 Apr 2016 UTC: INFO: QC.py(377): Changed (2/986) 985 986 to QC_BAD because salinity below bound 18:47:36 09 Apr 2016 UTC: INFO: QC.py(388): Changed (2/986) 985 986 to QC_BAD because bad salinity indicates conductivity issues 18:47:36 09 Apr 2016 UTC: INFO: QC.py(408): Changed (4/986) 4 170 404 458 to QC_INTERPOLATED because conductivity spikes 18:47:36 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/986) 984 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 18:47:36 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/986) 457:462 to QC_BAD because slow apogee CT flow 18:47:36 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/986) 1:11 to QC_BAD because prior to dive start 18:47:36 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/986) 1:11 457:462 984:986 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:47:36 09 Apr 2016 UTC: INFO: QC.py(180): Changed (20/986) 1:11 457:462 984:986 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 18:47:37 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:47:37 09 Apr 2016 UTC: INFO: QC.py(180): Changed (2/986) 170 404 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.43 cm/s 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.27 cm/s 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:47:37 09 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (129/986) 380 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:47:37 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/986) 4 7 985 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:47:37 09 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (129/986) 380 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 18:47:37 09 Apr 2016 UTC: INFO: QC.py(180): Changed (3/986) 4 7 985 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:47:37 09 Apr 2016 UTC: INFO: QC.py(180): Changed (20/986) 1:11 457:462 984:986 to QC_BAD because changed salinity implies changed optode oxygen 18:47:37 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/986) 170 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:47:37 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 96: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 18:47:37 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.96 18:47:37 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:47:37 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:47:37 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 18:47:37 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 18:48:24 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 18:48:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 18:48:25 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 18:48:32 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:48:32 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:48:32 09 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:48:32 09 Apr 2016 UTC /home/sg146/p1460096.log /home/sg146/p1460096.eng /home/sg146/p1460096.asc /home/sg146/p1460096.pro /home/sg146/p1460096.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 18:48:32 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:48:32 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:48:32 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:48:32 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 18:48:32 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 18:48:32 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:48:32 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:48:32 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:48:32 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 18:48:32 09 Apr 2016 UTC 22:40:32 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15328 22:40:32 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:42:14 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15388 22:42:14 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:42:14 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:42:14 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:42:14 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:42:14 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409124213 ] 22:42:14 09 Apr 2016 UTC: INFO: Base.py(1333): PID:15395 22:42:14 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 22:42:14 09 Apr 2016 UTC 22:42:14 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:42:14 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:42:14 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 22:42:14 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:42:14 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:97 calls_made:1 call_cycle:0 2222.5580 -15608.6540 04/09/16 22:37:58 UTC) to sdrifter@soest.hawaii.edu 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:42:14 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:1 call_cycle:0 22:42:14 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:14 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:42:16 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 22:42:16 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 22:42:16 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 22:42:16 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 22:42:16 09 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.97 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:42:16 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:16 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:42:16 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:42:16 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:42:16 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:42:16 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:42:16 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 22:42:16 09 Apr 2016 UTC 22:44:16 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15582 22:44:16 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:44:26 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15636 22:44:26 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:44:26 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:44:26 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:44:26 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:44:26 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409124425 ] 22:44:26 09 Apr 2016 UTC: INFO: Base.py(1333): PID:15643 22:44:26 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 22:44:26 09 Apr 2016 UTC 22:44:26 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:44:26 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:44:26 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 22:44:26 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:44:26 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:44:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:44:26 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:44:26 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:44:26 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:26 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:97 calls_made:2 call_cycle:0 2222.5580 -15608.6540 04/09/16 22:37:58 UTC) to sdrifter@soest.hawaii.edu 22:44:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:44:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:44:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:44:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:44:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:2 call_cycle:0 22:44:27 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:44:27 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:44:28 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 22:44:28 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 22:44:28 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 22:44:28 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 22:44:28 09 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [] 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.97 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:44:28 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:44:29 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:44:29 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:44:29 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:44:29 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:44:29 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:44:29 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:44:29 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:44:29 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:44:29 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:44:29 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:44:29 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 22:44:29 09 Apr 2016 UTC 22:51:47 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15973 22:51:47 09 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:58:26 09 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 16135 22:58:26 09 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:58:26 09 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:58:26 09 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:58:26 09 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:58:26 09 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409125826 ] 22:58:26 09 Apr 2016 UTC: INFO: Base.py(1333): PID:16142 22:58:26 09 Apr 2016 UTC: INFO: Base.py(1375): Started processing 22:58:26 09 Apr 2016 UTC 22:58:26 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:58:26 09 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:58:27 09 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 22:58:27 09 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:58:27 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:97 calls_made:4 call_cycle:0 2222.5580 -15608.6540 04/09/16 22:37:58 UTC) to sdrifter@soest.hawaii.edu 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:58:27 09 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:97 calls_made:4 call_cycle:0 22:58:27 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:58:27 09 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:58:29 09 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:58:29 09 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:58:29 09 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:58:29 09 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:58:29 09 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:58:29 09 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:58:29 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 22:58:29 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 22:58:29 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 22:58:29 09 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 22:58:29 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0097lz 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097lz.1a.x00 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097lz.1a.x01 22:58:29 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0097lz.r in process_file_group 22:58:29 09 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460097.log 22:58:29 09 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 22:58:29 09 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0097dz 22:58:29 09 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0097dz.x05 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.1a.x00 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.1a.x01 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.1a.x02 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.1a.x03 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0097dz.1a.x04 22:58:29 09 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0097dz.b.1a.x05 22:58:29 09 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0097dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 22:58:30 09 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [97] 22:58:30 09 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [97] 22:58:30 09 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460097) for profiles 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 22:58:30 09 Apr 2016 UTC: INFO: QC.py(365): Changed (8/984) 2 5:7 414 415 499 500 to QC_PROBABLY_BAD because raw temperature spikes 22:58:30 09 Apr 2016 UTC: INFO: QC.py(377): Changed (1/984) 982 to QC_BAD because raw salinity below bound 22:58:30 09 Apr 2016 UTC: INFO: QC.py(388): Changed (1/984) 982 to QC_BAD because bad raw salinity indicates raw conductivity issues 22:58:30 09 Apr 2016 UTC: INFO: QC.py(408): Changed (7/984) 3 414 415 458 499 883 983 to QC_PROBABLY_BAD because raw conductivity spikes 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/984) 984 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (8/984) 2 5:7 414 415 499 500 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/984) 3 458 883 983 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/984) 984 to QC_BAD because changed raw cond implies changed raw salinity 22:58:30 09 Apr 2016 UTC: INFO: QC.py(365): Changed (8/984) 2 5:7 414 415 499 500 to QC_INTERPOLATED because temperature spikes 22:58:30 09 Apr 2016 UTC: INFO: QC.py(377): Changed (1/984) 982 to QC_BAD because salinity below bound 22:58:30 09 Apr 2016 UTC: INFO: QC.py(388): Changed (1/984) 982 to QC_BAD because bad salinity indicates conductivity issues 22:58:30 09 Apr 2016 UTC: INFO: QC.py(408): Changed (7/984) 3 414 415 458 499 883 983 to QC_INTERPOLATED because conductivity spikes 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/984) 984 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/984) 456:461 to QC_BAD because slow apogee CT flow 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/984) 1:10 to QC_BAD because prior to dive start 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/984) 981 983 to QC_BAD because end of climb 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/984) 1:10 456:461 981:984 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (20/984) 1:10 456:461 981:984 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 22:58:30 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:58:30 09 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 97 interp_salinity data_points in_between 694 704 % suspect thermal-inertia points 698 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/984) 414 415 499 500 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/984) 883 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/984) 414 415 499 500 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.48 cm/s 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:58:30 09 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (129/984) 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/984) 2 5:7 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:58:30 09 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (132/984) 377:380 382:385 387:390 392:395 397:400 402:405 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (4/984) 2 5:7 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (20/984) 1:10 456:461 981:984 to QC_BAD because changed salinity implies changed optode oxygen 22:58:30 09 Apr 2016 UTC: INFO: QC.py(180): Changed (1/984) 883 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:58:30 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:58:31 09 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 22:58:31 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 97: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 22:58:31 09 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.97 22:58:31 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:58:31 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:58:31 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:58:31 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 22:58:31 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 22:59:18 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 22:59:18 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 22:59:18 09 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 22:59:26 09 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:59:26 09 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:59:26 09 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:59:26 09 Apr 2016 UTC /home/sg146/p1460097.log /home/sg146/p1460097.eng /home/sg146/p1460097.asc /home/sg146/p1460097.pro /home/sg146/p1460097.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 22:59:26 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:59:26 09 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:59:26 09 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:59:26 09 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:59:26 09 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:59:26 09 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:59:26 09 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:59:26 09 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:59:26 09 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 22:59:26 09 Apr 2016 UTC 02:47:42 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 21990 02:47:42 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:52:18 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 22182 02:52:18 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:52:18 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:52:18 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:52:18 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:52:18 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409165218 ] 02:52:18 10 Apr 2016 UTC: INFO: Base.py(1333): PID:22189 02:52:18 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 02:52:18 10 Apr 2016 UTC 02:52:18 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:52:18 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:52:18 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:52:19 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:52:19 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:98 calls_made:1 call_cycle:0 2224.4300 -15607.7980 04/10/16 02:45:35 UTC) to sdrifter@soest.hawaii.edu 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:52:19 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:98 calls_made:1 call_cycle:0 02:52:19 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:52:19 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:52:20 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:52:21 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:52:21 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:52:21 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:52:21 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:52:21 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:52:21 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 02:52:21 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 02:52:21 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 02:52:21 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 02:52:21 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0098lz 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098lz.1a.x00 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098lz.1a.x01 02:52:21 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0098lz.r in process_file_group 02:52:21 10 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460098.log 02:52:21 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 02:52:21 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0098dz 02:52:21 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0098dz.x05 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.1a.x00 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.1a.x01 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.1a.x02 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.1a.x03 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0098dz.1a.x04 02:52:21 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0098dz.b.1a.x05 02:52:21 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0098dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 02:52:22 10 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [98] 02:52:22 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [98] 02:52:22 10 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460098) for profiles 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 02:52:22 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/972) 2 434 435 462 to QC_PROBABLY_BAD because raw temperature spikes 02:52:22 10 Apr 2016 UTC: INFO: QC.py(377): Changed (1/972) 972 to QC_BAD because raw salinity below bound 02:52:22 10 Apr 2016 UTC: INFO: QC.py(388): Changed (1/972) 972 to QC_BAD because bad raw salinity indicates raw conductivity issues 02:52:22 10 Apr 2016 UTC: INFO: QC.py(408): Changed (4/972) 3 422 423 435 to QC_PROBABLY_BAD because raw conductivity spikes 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/972) 2 434 435 462 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (3/972) 3 422 423 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 02:52:22 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/972) 2 434 435 462 to QC_INTERPOLATED because temperature spikes 02:52:22 10 Apr 2016 UTC: INFO: QC.py(377): Changed (1/972) 972 to QC_BAD because salinity below bound 02:52:22 10 Apr 2016 UTC: INFO: QC.py(388): Changed (1/972) 972 to QC_BAD because bad salinity indicates conductivity issues 02:52:22 10 Apr 2016 UTC: INFO: QC.py(408): Changed (4/972) 3 422 423 435 to QC_INTERPOLATED because conductivity spikes 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/972) 460:465 to QC_BAD because slow apogee CT flow 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/972) 1:10 to QC_BAD because prior to dive start 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/972) 971 to QC_BAD because end of climb 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (18/972) 1:10 460:465 971 972 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (18/972) 1:10 460:465 971 972 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 02:52:22 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:52:22 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(982): SUGGESTION: 98 interp_salinity data_points in_between 739 747 % suspect thermal-inertia points 743 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/972) 434 435 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/972) 422 423 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/972) 434 435 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.99 cm/s 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.35 cm/s 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:52:22 10 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (124/972) 384 385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/972) 2 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:52:22 10 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (124/972) 384 385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/972) 2 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:52:22 10 Apr 2016 UTC: INFO: QC.py(180): Changed (18/972) 1:10 460:465 971 972 to QC_BAD because changed salinity implies changed optode oxygen 02:52:22 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:52:22 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 02:52:23 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 98: Data set size for profile, binned and kkyy files reduced by 18 points, a 1.85% reduction 02:52:23 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.98 02:52:23 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:52:23 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:52:23 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:52:23 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 02:52:23 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 02:53:10 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 02:53:11 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 02:53:11 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 02:53:19 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:53:19 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:53:19 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:53:19 10 Apr 2016 UTC /home/sg146/p1460098.log /home/sg146/p1460098.eng /home/sg146/p1460098.asc /home/sg146/p1460098.pro /home/sg146/p1460098.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 02:53:19 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:19 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:53:19 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:53:19 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:53:19 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:53:19 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:53:19 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:53:19 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:53:19 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 02:53:19 10 Apr 2016 UTC 06:48:31 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28343 06:48:31 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:53:12 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 28533 06:53:12 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:53:12 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:53:12 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:53:12 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:53:12 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160409205312 ] 06:53:12 10 Apr 2016 UTC: INFO: Base.py(1333): PID:28540 06:53:12 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 06:53:12 10 Apr 2016 UTC 06:53:12 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:53:12 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:53:12 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:53:13 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:53:13 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:99 calls_made:1 call_cycle:0 2226.0360 -15606.9870 04/10/16 06:46:29 UTC) to sdrifter@soest.hawaii.edu 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:53:13 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:99 calls_made:1 call_cycle:0 06:53:13 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:53:13 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:53:14 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:53:15 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:53:15 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:53:15 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:53:15 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:53:15 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:53:15 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 06:53:15 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 06:53:15 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 06:53:15 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 06:53:15 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0099lz 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099lz.1a.x00 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099lz.1a.x01 06:53:15 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0099lz.r in process_file_group 06:53:15 10 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460099.log 06:53:15 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 06:53:15 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0099dz 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.1a.x00 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.1a.x01 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.1a.x02 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.1a.x03 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.1a.x04 06:53:15 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0099dz.1a.x05 06:53:15 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0099dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 06:53:16 10 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [99] 06:53:16 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [99] 06:53:16 10 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460099) for profiles 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 06:53:16 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1001) 4:6 9 to QC_PROBABLY_BAD because raw temperature spikes 06:53:16 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1001) 4:6 9 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:53:16 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/1001) 4:6 9 to QC_INTERPOLATED because temperature spikes 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/1001) 465:470 to QC_BAD because slow apogee CT flow 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/1001) 1:10 to QC_BAD because prior to dive start 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (16/1001) 1:10 465:470 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:53:16 10 Apr 2016 UTC: INFO: QC.py(180): Changed (16/1001) 1:10 465:470 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 06:53:16 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.26 cm/s 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:53:16 10 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/1001) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:53:16 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1001) 4:6 9 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:53:16 10 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (126/1001) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 06:53:16 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/1001) 4:6 9 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:53:16 10 Apr 2016 UTC: INFO: QC.py(180): Changed (16/1001) 1:10 465:470 to QC_BAD because changed salinity implies changed optode oxygen 06:53:16 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:53:16 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 06:53:17 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 99: Data set size for profile, binned and kkyy files reduced by 16 points, a 1.60% reduction 06:53:17 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.99 06:53:17 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:53:17 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:53:17 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:53:17 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 06:53:17 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 06:54:05 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 06:54:05 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 06:54:05 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 06:54:13 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:54:13 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:54:13 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:54:13 10 Apr 2016 UTC /home/sg146/p1460099.log /home/sg146/p1460099.eng /home/sg146/p1460099.asc /home/sg146/p1460099.pro /home/sg146/p1460099.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 06:54:13 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:54:13 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:54:13 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:54:13 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:54:13 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:54:13 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:54:13 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:54:13 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:54:13 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 06:54:13 10 Apr 2016 UTC 10:43:35 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2460 10:43:35 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:48:38 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2593 10:48:38 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:48:38 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:48:38 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:48:38 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:48:38 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410004837 ] 10:48:38 10 Apr 2016 UTC: INFO: Base.py(1333): PID:2600 10:48:38 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 10:48:38 10 Apr 2016 UTC 10:48:38 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:48:38 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:48:38 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:48:38 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:48:38 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:100 calls_made:1 call_cycle:0 2227.6910 -15606.2500 04/10/16 10:41:29 UTC) to sdrifter@soest.hawaii.edu 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:48:38 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:100 calls_made:1 call_cycle:0 10:48:38 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:48:38 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:48:40 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:48:40 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:48:40 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:48:40 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:48:40 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:48:40 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:48:40 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 10:48:40 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 10:48:40 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 10:48:40 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 10:48:40 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0100lz 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100lz.1a.x00 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100lz.1a.x01 10:48:40 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0100lz.r in process_file_group 10:48:40 10 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460100.log 10:48:40 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 10:48:40 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0100dz 10:48:40 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0100dz.x05 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.1a.x00 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.1a.x01 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.1a.x02 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.1a.x03 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0100dz.1a.x04 10:48:40 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0100dz.b.1a.x05 10:48:40 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0100dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 10:48:41 10 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [100] 10:48:41 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [100] 10:48:41 10 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460100) for profiles 10:48:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 10:48:41 10 Apr 2016 UTC: INFO: QC.py(365): Changed (6/972) 3 5:7 636 637 to QC_PROBABLY_BAD because raw temperature spikes 10:48:41 10 Apr 2016 UTC: INFO: QC.py(377): Changed (1/972) 971 to QC_BAD because raw salinity below bound 10:48:41 10 Apr 2016 UTC: INFO: QC.py(388): Changed (1/972) 971 to QC_BAD because bad raw salinity indicates raw conductivity issues 10:48:41 10 Apr 2016 UTC: INFO: QC.py(408): Changed (2/972) 2 637 to QC_PROBABLY_BAD because raw conductivity spikes 10:48:41 10 Apr 2016 UTC: INFO: QC.py(180): Changed (6/972) 3 5:7 636 637 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:48:41 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/972) 2 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:48:41 10 Apr 2016 UTC: INFO: QC.py(365): Changed (6/972) 3 5:7 636 637 to QC_INTERPOLATED because temperature spikes 10:48:41 10 Apr 2016 UTC: INFO: QC.py(377): Changed (1/972) 971 to QC_BAD because salinity below bound 10:48:41 10 Apr 2016 UTC: INFO: QC.py(388): Changed (1/972) 971 to QC_BAD because bad salinity indicates conductivity issues 10:48:41 10 Apr 2016 UTC: INFO: QC.py(408): Changed (2/972) 2 637 to QC_INTERPOLATED because conductivity spikes 10:48:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/972) 449:454 to QC_BAD because slow apogee CT flow 10:48:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/972) 1:10 to QC_BAD because prior to dive start 10:48:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/972) 970 972 to QC_BAD because end of climb 10:48:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/972) 1:10 449:454 970:972 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:48:41 10 Apr 2016 UTC: INFO: QC.py(180): Changed (19/972) 1:10 449:454 970:972 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 10:48:42 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 10:48:42 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/972) 636 637 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 10:48:42 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/972) 636 637 to QC_INTERPOLATED because changed corrected temp implies changed speed 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.16 cm/s 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.12 cm/s 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:48:42 10 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (128/972) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:48:42 10 Apr 2016 UTC: INFO: QC.py(180): Changed (6/972) 3 5:7 636 637 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:48:42 10 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (128/972) 372:375 377:380 382:385 387:390 392:395 397:400 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 10:48:42 10 Apr 2016 UTC: INFO: QC.py(180): Changed (6/972) 3 5:7 636 637 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:48:42 10 Apr 2016 UTC: INFO: QC.py(180): Changed (19/972) 1:10 449:454 970:972 to QC_BAD because changed salinity implies changed optode oxygen 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:48:42 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 100: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.95% reduction 10:48:42 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.100 10:48:42 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:48:42 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:48:42 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 10:48:42 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 10:49:31 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 10:49:31 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 10:49:31 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 10:49:39 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:49:39 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:49:39 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:49:39 10 Apr 2016 UTC /home/sg146/p1460100.log /home/sg146/p1460100.eng /home/sg146/p1460100.asc /home/sg146/p1460100.pro /home/sg146/p1460100.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 10:49:39 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:49:39 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:49:39 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:49:39 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:49:39 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:49:39 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:49:39 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:49:39 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:49:39 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 10:49:39 10 Apr 2016 UTC 14:38:30 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 8688 14:38:30 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:41:04 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 8854 14:41:04 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:41:04 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:41:04 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:41:04 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:41:04 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410044104 ] 14:41:04 10 Apr 2016 UTC: INFO: Base.py(1333): PID:8862 14:41:04 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 14:41:04 10 Apr 2016 UTC 14:41:04 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:41:04 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:41:04 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:41:05 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:41:05 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:101 calls_made:1 call_cycle:0 2229.0930 -15605.6000 04/10/16 14:36:28 UTC) to sdrifter@soest.hawaii.edu 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:41:05 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:1 call_cycle:0 14:41:05 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:41:05 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:41:06 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:41:07 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 14:41:07 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 14:41:07 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 14:41:07 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 14:41:07 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0101lz 14:41:07 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0101lz.x01 14:41:07 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101lz.1a.x00 14:41:07 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0101lz.b.1a.x01 14:41:07 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0101lz.r in process_file_group 14:41:07 10 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460101.log 14:41:07 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:41:07 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0101dz 14:41:07 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.x00.PARTIAL.1a.1 14:41:07 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0101dz.r in process_file_group 14:41:07 10 Apr 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0101dz.r - expected 0x3578996761, generated 0x866c54f4 14:41:07 10 Apr 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0101dz.r - expected 0x24e35da5, generated 0x16ac 14:41:07 10 Apr 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0101dz.r - skipping 14:41:07 10 Apr 2016 UTC: ERROR: Base.py(272): Could not process sg0101dz - skipping 14:41:07 10 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [101] 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.101 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:41:07 10 Apr 2016 UTC: ERROR: Base.py(1960): Dive [101] failed to process completely. The following files were not processed completely: /home/sg146/sg0101dz.r File ./sg0101dz.x00.PARTIAL.1 is a PARTIAL file - consider resend_dive /d 101 00 Glider logout not seen - retransmissions from glider possible Consult baselog_160410044104 for details. 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:41:07 10 Apr 2016 UTC /home/sg146/p1460101.log 14:41:07 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:41:07 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:41:07 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:41:07 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:41:07 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:41:07 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:41:07 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 14:41:07 10 Apr 2016 UTC 14:45:50 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 9090 14:45:50 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 14:49:16 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 9202 14:49:16 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 14:49:16 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 14:49:16 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 14:49:16 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 14:49:16 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410044916 ] 14:49:16 10 Apr 2016 UTC: INFO: Base.py(1333): PID:9209 14:49:17 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 14:49:17 10 Apr 2016 UTC 14:49:17 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 14:49:17 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 14:49:17 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 14:49:17 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 14:49:17 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:101 calls_made:2 call_cycle:0 2229.0930 -15605.6000 04/10/16 14:36:28 UTC) to sdrifter@soest.hawaii.edu 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:49:17 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:101 calls_made:2 call_cycle:0 14:49:17 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:49:17 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 14:49:19 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 14:49:19 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 14:49:19 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 14:49:19 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 14:49:19 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 14:49:19 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 14:49:19 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 14:49:19 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 14:49:19 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 14:49:19 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 14:49:19 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 14:49:19 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0101dz 14:49:19 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0101dz.x05 14:49:19 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.1a.x00 14:49:19 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.1a.x01 14:49:19 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.1a.x02 14:49:19 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.1a.x03 14:49:19 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0101dz.1a.x04 14:49:19 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0101dz.b.1a.x05 14:49:19 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0101dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 14:49:20 10 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [101] 14:49:20 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [101] 14:49:20 10 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460101) for profiles 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 14:49:20 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/986) 4 8 245 461 to QC_PROBABLY_BAD because raw temperature spikes 14:49:20 10 Apr 2016 UTC: INFO: QC.py(408): Changed (1/986) 245 to QC_PROBABLY_BAD because raw conductivity spikes 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/986) 986 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 14:49:20 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/986) 4 8 245 461 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 14:49:20 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/986) 986 to QC_BAD because changed raw cond implies changed raw salinity 14:49:20 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/986) 4 8 245 461 to QC_INTERPOLATED because temperature spikes 14:49:20 10 Apr 2016 UTC: INFO: QC.py(408): Changed (1/986) 245 to QC_INTERPOLATED because conductivity spikes 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/986) 986 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/986) 459:464 to QC_BAD because slow apogee CT flow 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/986) 1:10 to QC_BAD because prior to dive start 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (3/986) 983:985 to QC_BAD because end of climb 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/986) 1:10 459:464 983:986 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 14:49:20 10 Apr 2016 UTC: INFO: QC.py(180): Changed (20/986) 1:10 459:464 983:986 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 14:49:20 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 1 iterations 14:49:20 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/986) 245 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 14:49:20 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/986) 245 to QC_INTERPOLATED because changed corrected temp implies changed speed 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.48 cm/s 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.10 cm/s 14:49:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 14:49:20 10 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (124/986) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 14:49:20 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/986) 4 8 245 461 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 14:49:21 10 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (124/986) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 14:49:21 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/986) 4 8 245 461 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 14:49:21 10 Apr 2016 UTC: INFO: QC.py(180): Changed (20/986) 1:10 459:464 983:986 to QC_BAD because changed salinity implies changed optode oxygen 14:49:21 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 14:49:21 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 14:49:21 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 101: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 14:49:21 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.101 14:49:21 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 14:49:21 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 14:49:21 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 14:49:21 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 14:49:21 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 14:50:09 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 14:50:10 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 14:50:10 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 14:50:18 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 14:50:18 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 14:50:18 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 14:50:18 10 Apr 2016 UTC /home/sg146/p1460101.eng /home/sg146/p1460101.asc /home/sg146/p1460101.pro /home/sg146/p1460101.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 14:50:18 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:18 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 14:50:18 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 14:50:18 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 14:50:18 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 14:50:18 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 14:50:18 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 14:50:18 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 14:50:18 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 14:50:18 10 Apr 2016 UTC 18:42:50 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15206 18:42:50 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 18:47:26 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 15336 18:47:26 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 18:47:26 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 18:47:26 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 18:47:26 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 18:47:26 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410084726 ] 18:47:26 10 Apr 2016 UTC: INFO: Base.py(1333): PID:15343 18:47:26 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 18:47:26 10 Apr 2016 UTC 18:47:26 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 18:47:26 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 18:47:26 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 18:47:27 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 18:47:27 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:102 calls_made:1 call_cycle:0 2230.5840 -15604.6920 04/10/16 18:40:35 UTC) to sdrifter@soest.hawaii.edu 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:47:27 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:102 calls_made:1 call_cycle:0 18:47:27 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:47:27 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 18:47:28 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 18:47:29 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 18:47:29 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 18:47:29 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 18:47:29 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 18:47:29 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 18:47:29 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 18:47:29 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 18:47:29 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 18:47:29 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 18:47:29 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0102lz 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102lz.1a.x00 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102lz.1a.x01 18:47:29 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0102lz.r in process_file_group 18:47:29 10 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460102.log 18:47:29 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 18:47:29 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0102dz 18:47:29 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0102dz.x05 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.1a.x00 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.1a.x01 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.1a.x02 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.1a.x03 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0102dz.1a.x04 18:47:29 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0102dz.b.1a.x05 18:47:29 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0102dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 18:47:30 10 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [102] 18:47:30 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [102] 18:47:30 10 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460102) for profiles 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 18:47:30 10 Apr 2016 UTC: INFO: QC.py(365): Changed (3/995) 7 8 163 to QC_PROBABLY_BAD because raw temperature spikes 18:47:30 10 Apr 2016 UTC: INFO: QC.py(377): Changed (2/995) 994 995 to QC_BAD because raw salinity below bound 18:47:30 10 Apr 2016 UTC: INFO: QC.py(388): Changed (2/995) 994 995 to QC_BAD because bad raw salinity indicates raw conductivity issues 18:47:30 10 Apr 2016 UTC: INFO: QC.py(408): Changed (3/995) 2 3 163 to QC_PROBABLY_BAD because raw conductivity spikes 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (3/995) 7 8 163 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/995) 2 3 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 18:47:30 10 Apr 2016 UTC: INFO: QC.py(365): Changed (3/995) 7 8 163 to QC_INTERPOLATED because temperature spikes 18:47:30 10 Apr 2016 UTC: INFO: QC.py(377): Changed (2/995) 994 995 to QC_BAD because salinity below bound 18:47:30 10 Apr 2016 UTC: INFO: QC.py(388): Changed (2/995) 994 995 to QC_BAD because bad salinity indicates conductivity issues 18:47:30 10 Apr 2016 UTC: INFO: QC.py(408): Changed (3/995) 2 3 163 to QC_INTERPOLATED because conductivity spikes 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/995) 465:470 to QC_BAD because slow apogee CT flow 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/995) 1:10 to QC_BAD because prior to dive start 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/995) 993 to QC_BAD because end of climb 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/995) 1:10 465:470 993:995 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (19/995) 1:10 465:470 993:995 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 18:47:30 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/995) 163 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/995) 163 to QC_INTERPOLATED because changed corrected temp implies changed speed 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.94 cm/s 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.28 cm/s 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 18:47:30 10 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (128/995) 388:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (3/995) 7 8 163 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 18:47:30 10 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (128/995) 388:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (3/995) 7 8 163 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 18:47:30 10 Apr 2016 UTC: INFO: QC.py(180): Changed (19/995) 1:10 465:470 993:995 to QC_BAD because changed salinity implies changed optode oxygen 18:47:30 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 18:47:30 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 18:47:31 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 102: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.91% reduction 18:47:31 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.102 18:47:31 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 18:47:31 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 18:47:31 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 18:47:31 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 18:47:31 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 18:48:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 18:48:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 18:48:20 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 18:48:28 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 18:48:28 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 18:48:28 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 18:48:28 10 Apr 2016 UTC /home/sg146/p1460102.log /home/sg146/p1460102.eng /home/sg146/p1460102.asc /home/sg146/p1460102.pro /home/sg146/p1460102.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 18:48:28 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:48:28 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 18:48:28 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 18:48:28 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 18:48:28 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 18:48:28 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 18:48:28 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 18:48:28 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 18:48:28 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 18:48:28 10 Apr 2016 UTC 22:35:52 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 21127 22:35:52 10 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 22:40:46 10 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 21371 22:40:46 10 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 22:40:46 10 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 22:40:46 10 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 22:40:46 10 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 22:40:46 10 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410124046 ] 22:40:46 10 Apr 2016 UTC: INFO: Base.py(1333): PID:21378 22:40:46 10 Apr 2016 UTC: INFO: Base.py(1375): Started processing 22:40:46 10 Apr 2016 UTC 22:40:46 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 22:40:46 10 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 22:40:46 10 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 22:40:47 10 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 22:40:47 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:103 calls_made:1 call_cycle:0 2231.7310 -15603.7540 04/10/16 22:33:35 UTC) to sdrifter@soest.hawaii.edu 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:40:47 10 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:103 calls_made:1 call_cycle:0 22:40:47 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:40:47 10 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 22:40:49 10 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 22:40:49 10 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 22:40:49 10 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 22:40:49 10 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 22:40:49 10 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 22:40:49 10 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 22:40:49 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 22:40:49 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 22:40:49 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 22:40:49 10 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 22:40:49 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0103lz 22:40:49 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0103lz.x01 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0103lz.1a.x00 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0103lz.b.1a.x01 22:40:49 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0103lz.r in process_file_group 22:40:49 10 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460103.log 22:40:49 10 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 22:40:49 10 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0103dz 22:40:49 10 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0103dz.x05 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.1a.x00 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.1a.x01 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.1a.x02 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.1a.x03 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0103dz.1a.x04 22:40:49 10 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0103dz.b.1a.x05 22:40:49 10 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0103dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 22:40:50 10 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [103] 22:40:50 10 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [103] 22:40:50 10 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460103) for profiles 22:40:50 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 22:40:50 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/969) 4 5 9 732 to QC_PROBABLY_BAD because raw temperature spikes 22:40:50 10 Apr 2016 UTC: INFO: QC.py(377): Changed (2/969) 968 969 to QC_BAD because raw salinity below bound 22:40:50 10 Apr 2016 UTC: INFO: QC.py(388): Changed (2/969) 968 969 to QC_BAD because bad raw salinity indicates raw conductivity issues 22:40:50 10 Apr 2016 UTC: INFO: QC.py(408): Changed (3/969) 732:734 to QC_PROBABLY_BAD because raw conductivity spikes 22:40:50 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/969) 4 5 9 732 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 22:40:50 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/969) 733 734 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 22:40:50 10 Apr 2016 UTC: INFO: QC.py(365): Changed (4/969) 4 5 9 732 to QC_INTERPOLATED because temperature spikes 22:40:50 10 Apr 2016 UTC: INFO: QC.py(377): Changed (2/969) 968 969 to QC_BAD because salinity below bound 22:40:50 10 Apr 2016 UTC: INFO: QC.py(388): Changed (2/969) 968 969 to QC_BAD because bad salinity indicates conductivity issues 22:40:50 10 Apr 2016 UTC: INFO: QC.py(408): Changed (3/969) 732:734 to QC_INTERPOLATED because conductivity spikes 22:40:50 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/969) 461:466 to QC_BAD because slow apogee CT flow 22:40:50 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (10/969) 1:10 to QC_BAD because prior to dive start 22:40:50 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (1/969) 967 to QC_BAD because end of climb 22:40:50 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/969) 1:10 461:466 967:969 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 22:40:50 10 Apr 2016 UTC: INFO: QC.py(180): Changed (19/969) 1:10 461:466 967:969 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 22:40:51 10 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/969) 732 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/969) 733 734 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (1/969) 732 to QC_INTERPOLATED because changed corrected temp implies changed speed 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.15 cm/s 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.22 cm/s 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 22:40:51 10 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (125/969) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/969) 4 5 9 732 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 22:40:51 10 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (125/969) 387:390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (4/969) 4 5 9 732 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (19/969) 1:10 461:466 967:969 to QC_BAD because changed salinity implies changed optode oxygen 22:40:51 10 Apr 2016 UTC: INFO: QC.py(180): Changed (2/969) 733 734 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 22:40:51 10 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 103: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.96% reduction 22:40:51 10 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.103 22:40:51 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 22:40:51 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 22:40:51 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 22:40:51 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 22:41:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 22:41:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 22:41:41 10 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 22:41:50 10 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 22:41:50 10 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 22:41:50 10 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 22:41:50 10 Apr 2016 UTC /home/sg146/p1460103.log /home/sg146/p1460103.eng /home/sg146/p1460103.asc /home/sg146/p1460103.pro /home/sg146/p1460103.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 22:41:50 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:41:50 10 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 22:41:50 10 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 22:41:50 10 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 22:41:50 10 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 22:41:50 10 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 22:41:50 10 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 22:41:50 10 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 22:41:50 10 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 22:41:50 10 Apr 2016 UTC 02:30:35 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27329 02:30:35 11 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 02:36:53 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 27488 02:36:53 11 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 02:36:53 11 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 02:36:53 11 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 02:36:53 11 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 02:36:53 11 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410163653 ] 02:36:53 11 Apr 2016 UTC: INFO: Base.py(1333): PID:27495 02:36:53 11 Apr 2016 UTC: INFO: Base.py(1375): Started processing 02:36:53 11 Apr 2016 UTC 02:36:53 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 02:36:53 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 02:36:53 11 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 02:36:54 11 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 02:36:54 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:104 calls_made:1 call_cycle:0 2232.9240 -15603.0630 04/11/16 02:28:29 UTC) to sdrifter@soest.hawaii.edu 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:36:54 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:104 calls_made:1 call_cycle:0 02:36:54 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:36:54 11 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 02:36:55 11 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 02:36:56 11 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 02:36:56 11 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 02:36:56 11 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 02:36:56 11 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 02:36:56 11 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 02:36:56 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 02:36:56 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 02:36:56 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 02:36:56 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 02:36:56 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0104lz 02:36:56 11 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0104lz.x01 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0104lz.1a.x00 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0104lz.b.1a.x01 02:36:56 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0104lz.r in process_file_group 02:36:56 11 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460104.log 02:36:56 11 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 02:36:56 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0104dz 02:36:56 11 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0104dz.x05 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.1a.x00 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.1a.x01 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.1a.x02 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.1a.x03 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0104dz.1a.x04 02:36:56 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0104dz.b.1a.x05 02:36:56 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0104dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 02:36:57 11 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [104] 02:36:57 11 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [104] 02:36:57 11 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460104) for profiles 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 02:36:57 11 Apr 2016 UTC: INFO: QC.py(365): Changed (7/985) 2:5 8 740 741 to QC_PROBABLY_BAD because raw temperature spikes 02:36:57 11 Apr 2016 UTC: INFO: QC.py(408): Changed (4/985) 4 5 740 741 to QC_PROBABLY_BAD because raw conductivity spikes 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(2986): Changed (1/985) 985 to QC_BAD because uncorrectable 0.0m raw conductivity bubble on climb 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (7/985) 2:5 8 740 741 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (1/985) 985 to QC_BAD because changed raw cond implies changed raw salinity 02:36:57 11 Apr 2016 UTC: INFO: QC.py(365): Changed (7/985) 2:5 8 740 741 to QC_INTERPOLATED because temperature spikes 02:36:57 11 Apr 2016 UTC: INFO: QC.py(408): Changed (4/985) 4 5 740 741 to QC_INTERPOLATED because conductivity spikes 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3031): Changed (1/985) 985 to QC_BAD because uncorrectable 0.0m conductivity bubble on climb 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/985) 464:469 to QC_BAD because slow apogee CT flow 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/985) 1:11 to QC_BAD because prior to dive start 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (2/985) 983 984 to QC_BAD because end of climb 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (20/985) 1:11 464:469 983:985 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (20/985) 1:11 464:469 983:985 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 02:36:57 11 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/985) 740 741 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/985) 740 741 to QC_INTERPOLATED because changed corrected temp implies changed speed 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.92 cm/s 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.33 cm/s 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 02:36:57 11 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (124/985) 389 390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (7/985) 2:5 8 740 741 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 02:36:57 11 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (124/985) 389 390 392:395 397:400 402:405 407:410 412:415 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (7/985) 2:5 8 740 741 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 02:36:57 11 Apr 2016 UTC: INFO: QC.py(180): Changed (20/985) 1:11 464:469 983:985 to QC_BAD because changed salinity implies changed optode oxygen 02:36:57 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 02:36:58 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 02:36:58 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 104: Data set size for profile, binned and kkyy files reduced by 20 points, a 2.03% reduction 02:36:58 11 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.104 02:36:58 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 02:36:58 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 02:36:58 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 02:36:58 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 02:36:58 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 02:37:48 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 02:37:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 02:37:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 02:37:57 11 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 02:37:57 11 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 02:37:57 11 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 02:37:57 11 Apr 2016 UTC /home/sg146/p1460104.log /home/sg146/p1460104.eng /home/sg146/p1460104.asc /home/sg146/p1460104.pro /home/sg146/p1460104.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 02:37:57 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:37:57 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 02:37:57 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 02:37:57 11 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 02:37:57 11 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 02:37:57 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 02:37:57 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 02:37:57 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 02:37:57 11 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 02:37:57 11 Apr 2016 UTC 06:29:30 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 1433 06:29:30 11 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:31:05 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 1543 06:31:05 11 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:31:05 11 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:31:05 11 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:31:05 11 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:31:05 11 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410203104 ] 06:31:05 11 Apr 2016 UTC: INFO: Base.py(1333): PID:1550 06:31:05 11 Apr 2016 UTC: INFO: Base.py(1375): Started processing 06:31:05 11 Apr 2016 UTC 06:31:05 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:31:05 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:31:05 11 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:31:05 11 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:31:05 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:31:05 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:31:05 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:05 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:31:05 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:05 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:31:05 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:05 11 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:105 calls_made:1 call_cycle:0 2234.1660 -15602.5670 04/11/16 06:27:04 UTC) to sdrifter@soest.hawaii.edu 06:31:06 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:06 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:31:06 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:06 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:31:06 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:06 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:31:06 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:06 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:31:06 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:1 call_cycle:0 06:31:06 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:31:06 11 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:31:07 11 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:31:07 11 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:31:07 11 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:31:07 11 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:31:07 11 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:31:07 11 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:31:08 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 06:31:08 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 06:31:08 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 06:31:08 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 06:31:08 11 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [] 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.105 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:31:08 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:31:08 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:31:08 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:31:08 11 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:31:08 11 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:31:08 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:31:08 11 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 06:31:08 11 Apr 2016 UTC 06:33:13 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 1750 06:33:13 11 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:35:36 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 1846 06:35:36 11 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:35:36 11 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:35:36 11 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:35:36 11 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:35:36 11 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410203536 ] 06:35:36 11 Apr 2016 UTC: INFO: Base.py(1333): PID:1855 06:35:36 11 Apr 2016 UTC: INFO: Base.py(1375): Started processing 06:35:36 11 Apr 2016 UTC 06:35:36 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:35:36 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:35:36 11 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:35:37 11 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:35:37 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:105 calls_made:2 call_cycle:0 2234.1660 -15602.5670 04/11/16 06:27:04 UTC) to sdrifter@soest.hawaii.edu 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:35:37 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:2 call_cycle:0 06:35:37 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:35:37 11 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:35:39 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 06:35:39 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 06:35:39 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 06:35:39 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 06:35:39 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0105lz 06:35:39 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.1a.x00 06:35:39 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.x01.PARTIAL.1a.1 06:35:39 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0105lz.r in process_file_group 06:35:39 11 Apr 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0105lz.r - expected 0x2723510789, generated 0xc10c01a1 06:35:39 11 Apr 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0105lz.r - expected 0x8fc16460, generated 0x2df0 06:35:39 11 Apr 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0105lz.r - skipping 06:35:39 11 Apr 2016 UTC: ERROR: Base.py(243): Could not process sg0105lz - skipping 06:35:39 11 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 06:35:39 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0105lz 06:35:39 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.1a.x00 06:35:39 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.x01.PARTIAL.1a.1 06:35:39 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0105lz.r in process_file_group 06:35:39 11 Apr 2016 UTC: ERROR: BaseGZip.py(203): CRC check failed on ./sg0105lz.r - expected 0x2723510789, generated 0xc10c01a1 06:35:39 11 Apr 2016 UTC: ERROR: BaseGZip.py(207): Incorrect length of data produced from ./sg0105lz.r - expected 0x8fc16460, generated 0x2df0 06:35:39 11 Apr 2016 UTC: ERROR: Base.py(546): Problem gzip decompressing ./sg0105lz.r - skipping 06:35:39 11 Apr 2016 UTC: ERROR: Base.py(272): Could not process sg0105lz - skipping 06:35:39 11 Apr 2016 UTC: WARNING: Base.py(1624): No dives to process 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [] 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1780): No dives found to profile 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.105 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:35:39 11 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:35:39 11 Apr 2016 UTC: ERROR: Base.py(1960): Dive [105] failed to process completely. The following files were not processed completely: /home/sg146/sg0105lz.r File ./sg0105lz.x01.PARTIAL.1 is a PARTIAL file - consider resend_dive /l 105 01 Glider logout not seen - retransmissions from glider possible Consult baselog_160410203536 for details. 06:35:39 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:35:39 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:35:39 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:35:40 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:35:40 11 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:35:40 11 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:35:40 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:35:40 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:35:40 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:35:40 11 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 06:35:40 11 Apr 2016 UTC 06:37:38 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2146 06:37:39 11 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 06:41:45 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 2393 06:41:45 11 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 06:41:45 11 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 06:41:45 11 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 06:41:45 11 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 06:41:45 11 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160410204144 ] 06:41:45 11 Apr 2016 UTC: INFO: Base.py(1333): PID:2400 06:41:45 11 Apr 2016 UTC: INFO: Base.py(1375): Started processing 06:41:45 11 Apr 2016 UTC 06:41:45 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 06:41:45 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 06:41:45 11 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 06:41:45 11 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 06:41:45 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 06:41:45 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:41:45 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:45 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:41:45 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:45 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:41:45 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:45 11 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:105 calls_made:3 call_cycle:0 2234.1660 -15602.5670 04/11/16 06:27:04 UTC) to sdrifter@soest.hawaii.edu 06:41:46 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:46 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:41:46 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:46 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:41:46 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:46 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:41:46 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:46 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:41:46 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:105 calls_made:3 call_cycle:0 06:41:46 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:41:46 11 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 06:41:47 11 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 06:41:47 11 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 06:41:47 11 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 06:41:47 11 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 06:41:47 11 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 06:41:47 11 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 06:41:48 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 06:41:48 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 06:41:48 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 06:41:48 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 06:41:48 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0105lz 06:41:48 11 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0105lz.x01 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105lz.1a.x00 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0105lz.b.1a.x01 06:41:48 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0105lz.r in process_file_group 06:41:48 11 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460105.log 06:41:48 11 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 06:41:48 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0105dz 06:41:48 11 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0105dz.x05 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.1a.x00 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.1a.x01 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.1a.x02 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.1a.x03 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0105dz.1a.x04 06:41:48 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0105dz.b.1a.x05 06:41:48 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0105dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 06:41:48 11 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [105] 06:41:48 11 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [105] 06:41:48 11 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460105) for profiles 06:41:48 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 06:41:48 11 Apr 2016 UTC: INFO: QC.py(365): Changed (6/977) 2 4 7 9 171 745 to QC_PROBABLY_BAD because raw temperature spikes 06:41:48 11 Apr 2016 UTC: INFO: QC.py(377): Changed (2/977) 976 977 to QC_BAD because raw salinity below bound 06:41:48 11 Apr 2016 UTC: INFO: QC.py(388): Changed (2/977) 976 977 to QC_BAD because bad raw salinity indicates raw conductivity issues 06:41:48 11 Apr 2016 UTC: INFO: QC.py(408): Changed (4/977) 170:172 745 to QC_PROBABLY_BAD because raw conductivity spikes 06:41:48 11 Apr 2016 UTC: INFO: QC.py(180): Changed (6/977) 2 4 7 9 171 745 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 06:41:48 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/977) 170 172 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 06:41:48 11 Apr 2016 UTC: INFO: QC.py(365): Changed (6/977) 2 4 7 9 171 745 to QC_INTERPOLATED because temperature spikes 06:41:48 11 Apr 2016 UTC: INFO: QC.py(377): Changed (2/977) 976 977 to QC_BAD because salinity below bound 06:41:48 11 Apr 2016 UTC: INFO: QC.py(388): Changed (2/977) 976 977 to QC_BAD because bad salinity indicates conductivity issues 06:41:48 11 Apr 2016 UTC: INFO: QC.py(408): Changed (4/977) 170:172 745 to QC_INTERPOLATED because conductivity spikes 06:41:48 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/977) 458:463 to QC_BAD because slow apogee CT flow 06:41:48 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/977) 1:11 to QC_BAD because prior to dive start 06:41:48 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (19/977) 1:11 458:463 976 977 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 06:41:48 11 Apr 2016 UTC: INFO: QC.py(180): Changed (19/977) 1:11 458:463 976 977 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 06:41:49 11 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 2 iterations 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/977) 171 745 to QC_INTERPOLATED because changed corrected temp implies changed corrected salinity 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/977) 170 172 to QC_INTERPOLATED because changed corrected cond implies changed corrected salinity 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/977) 171 745 to QC_INTERPOLATED because changed corrected temp implies changed speed 06:41:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 31.79 cm/s 06:41:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.29 cm/s 06:41:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 06:41:49 11 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (126/977) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (6/977) 2 4 7 9 171 745 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 06:41:49 11 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (126/977) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (6/977) 2 4 7 9 171 745 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (19/977) 1:11 458:463 976 977 to QC_BAD because changed salinity implies changed optode oxygen 06:41:49 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/977) 170 172 to QC_INTERPOLATED because changed salinity implies changed optode oxygen 06:41:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 06:41:49 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 06:41:49 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 105: Data set size for profile, binned and kkyy files reduced by 19 points, a 1.94% reduction 06:41:50 11 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.105 06:41:50 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 06:41:50 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 06:41:50 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 06:41:50 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 06:41:50 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 06:42:40 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 06:42:40 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 06:42:40 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 06:42:49 11 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 06:42:49 11 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 06:42:49 11 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 06:42:49 11 Apr 2016 UTC /home/sg146/p1460105.log /home/sg146/p1460105.eng /home/sg146/p1460105.asc /home/sg146/p1460105.pro /home/sg146/p1460105.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 06:42:49 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:42:49 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 06:42:49 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 06:42:49 11 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 06:42:49 11 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 06:42:49 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 06:42:49 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 06:42:49 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 06:42:49 11 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 06:42:49 11 Apr 2016 UTC 10:31:53 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 8676 10:31:53 11 Apr 2016 UTC: INFO: BaseLogin.py(68): Existing files = {} 10:36:59 11 Apr 2016 UTC: INFO: BaseLog.py(77): Process id = 8802 10:36:59 11 Apr 2016 UTC: INFO: Utils.py(656): Base station version 2.8-R6 10:36:59 11 Apr 2016 UTC: INFO: Utils.py(659): Python version 2.7.5 10:36:59 11 Apr 2016 UTC: INFO: Utils.py(668): Numpy version 1.9.0 10:36:59 11 Apr 2016 UTC: INFO: Utils.py(677): Scipy version 0.12.1 10:36:59 11 Apr 2016 UTC: INFO: Base.py(1331): Invoked with command line [/usr/local/basestation/Base.py --mission_dir . --verbose --make_dive_profiles --daemon --make_dive_pro --domain_name=soest.hawaii.edu --base_log baselog_160411003658 ] 10:36:59 11 Apr 2016 UTC: INFO: Base.py(1333): PID:8809 10:36:59 11 Apr 2016 UTC: INFO: Base.py(1375): Started processing 10:36:59 11 Apr 2016 UTC 10:36:59 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 156, line -1:0:3:0:12:321:-2:483:1708:1609:-25.44:-0.05:10.37:24.02:9.43:39.48 GPS,030316,221926,2118.966,-15753.241,9,2.1,29,9.8 10:36:59 11 Apr 2016 UTC: WARNING: CommLog.py(863): Unknown line: file ./comm.log, lineno 176, line -1:0:3:0:12:321:1 logout 10:36:59 11 Apr 2016 UTC: WARNING: CommLog.py(690): Found Disconnect with no previous Connected: file ./comm.log, lineno 608 10:36:59 11 Apr 2016 UTC: INFO: Base.py(1403): Instrument ID = 146 10:36:59 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for gps recov critical 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(975): Sending GPS (dive:106 calls_made:2 call_cycle:0 2235.6710 -15601.9660 04/11/16 10:27:23 UTC) to sdrifter@soest.hawaii.edu 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:36:59 11 Apr 2016 UTC: INFO: CommLog.py(51): prefix:dive:106 calls_made:2 call_cycle:0 10:36:59 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:36:59 11 Apr 2016 UTC: INFO: Base.py(1435): Processing comm_merged.log 10:37:01 11 Apr 2016 UTC: INFO: Base.py(1455): Finished processing comm_merged.log 10:37:01 11 Apr 2016 UTC: INFO: Base.py(1554): Processing seaglider selftests 10:37:01 11 Apr 2016 UTC: INFO: Base.py(1577): No new selftests to processed 10:37:01 11 Apr 2016 UTC: INFO: Base.py(1579): Processing pdoscmd.bat logs 10:37:01 11 Apr 2016 UTC: INFO: Base.py(1595): No pdos logfiles found to process 10:37:01 11 Apr 2016 UTC: INFO: Base.py(1602): Processing dive(s) 10:37:01 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 36 - using 4096 as default 10:37:01 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 42 - using 4096 as default 10:37:02 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 77 - using 4096 as default 10:37:02 11 Apr 2016 UTC: WARNING: Base.py(1613): No fragment size found for 78 - using 4096 as default 10:37:02 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0106lz 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106lz.1a.x00 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106lz.1a.x01 10:37:02 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0106lz.r in process_file_group 10:37:02 11 Apr 2016 UTC: INFO: Base.py(585): Removing secrets from ./p1460106.log 10:37:02 11 Apr 2016 UTC: INFO: Base.py(265): fragment_size = 4096 10:37:02 11 Apr 2016 UTC: INFO: Base.py(368): Processing ./sg0106dz 10:37:02 11 Apr 2016 UTC: INFO: Bogue.py(158): Eliminated padding found in /home/sg146/sg0106dz.x05 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.1a.x00 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.1a.x01 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.1a.x02 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.1a.x03 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment ./sg0106dz.1a.x04 10:37:02 11 Apr 2016 UTC: INFO: Base.py(687): Checking fragment /home/sg146/sg0106dz.b.1a.x05 10:37:02 11 Apr 2016 UTC: INFO: Base.py(472): Processing ./sg0106dz.r in process_file_group /usr/local/basestation/DataFiles.py:112: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(elaps_tms != None): /usr/local/basestation/DataFiles.py:152: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(AD_pitch != None): /usr/local/basestation/Sensors/sbect_ext.py:95: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq == None): /usr/local/basestation/Sensors/sbect_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbect_condFreq != None): /usr/local/basestation/Sensors/sbe43_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(sbe43_o2_freq != None): /usr/local/basestation/Sensors/aa3830_ext.py:122: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(aa3830_O2 != None): /usr/local/basestation/Sensors/wlbbfl2_ext.py:116: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x == None: /usr/local/basestation/Sensors/wlbbfl2_ext.py:121: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if x != None: /usr/local/basestation/Sensors/wlbb2f_ext.py:99: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(wlbb2f_redRef != None): 10:37:02 11 Apr 2016 UTC: INFO: Base.py(1622): Processed dive(s) [106] 10:37:02 11 Apr 2016 UTC: INFO: Base.py(1656): Dives to process = [106] 10:37:02 11 Apr 2016 UTC: INFO: Base.py(1719): Processing (./p1460106) for profiles 10:37:02 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(1317): Loading data from original files /usr/local/basestation/MakeDiveProfiles.py:2179: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(vbdCC_v == None): /usr/local/basestation/DataFiles.py:313: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (values_v != None): /usr/local/basestation/MakeDiveProfiles.py:2514: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if(tempFreq_v == None and condFreq_v == None): 10:37:02 11 Apr 2016 UTC: INFO: QC.py(365): Changed (3/966) 963:965 to QC_PROBABLY_BAD because raw temperature spikes 10:37:02 11 Apr 2016 UTC: INFO: QC.py(377): Changed (1/966) 964 to QC_BAD because raw salinity below bound 10:37:02 11 Apr 2016 UTC: INFO: QC.py(408): Changed (3/966) 5 964 965 to QC_PROBABLY_BAD because raw conductivity spikes 10:37:02 11 Apr 2016 UTC: INFO: QC.py(180): Changed (2/966) 963 965 to QC_PROBABLY_BAD because changed raw temp implies changed raw salinity 10:37:02 11 Apr 2016 UTC: INFO: QC.py(180): Changed (1/966) 5 to QC_PROBABLY_BAD because changed raw cond implies changed raw salinity 10:37:02 11 Apr 2016 UTC: INFO: QC.py(365): Changed (3/966) 963:965 to QC_INTERPOLATED because temperature spikes 10:37:02 11 Apr 2016 UTC: INFO: QC.py(377): Changed (1/966) 964 to QC_BAD because salinity below bound 10:37:02 11 Apr 2016 UTC: INFO: QC.py(388): Changed (1/966) 964 to QC_BAD because bad salinity indicates conductivity issues 10:37:02 11 Apr 2016 UTC: INFO: QC.py(408): Changed (2/966) 5 963 to QC_INTERPOLATED because conductivity spikes 10:37:02 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3150): Changed (6/966) 457:462 to QC_BAD because slow apogee CT flow 10:37:02 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3250): Changed (11/966) 1:11 to QC_BAD because prior to dive start 10:37:02 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3323): Changed (4/966) 962 963 965 966 to QC_BAD because end of climb 10:37:02 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3350): Changed (22/966) 1:11 457:462 962:966 to QC_BAD because bad corrected temperature and conductivity suggests bad salinity 10:37:02 11 Apr 2016 UTC: INFO: QC.py(180): Changed (22/966) 1:11 457:462 962:966 to QC_BAD because changed corrected salin implies changed speed /usr/lib64/python2.7/site-packages/numpy/core/fromnumeric.py:2499: VisibleDeprecationWarning: `rank` is deprecated; use the `ndim` attribute or function instead. To find the rank of a matrix see `numpy.linalg.matrix_rank`. VisibleDeprecationWarning) 10:37:03 11 Apr 2016 UTC: INFO: TempSalinityVelocity.py(967): TSV exiting after 1 iterations 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3503): Average estimated final speed: 32.51 cm/s 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3506): RMS observed vs. computed w: 3.27 cm/s 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3557): Starting sensor extensions data processing 10:37:03 11 Apr 2016 UTC: INFO: sbe43_ext.py(236): Changed (124/966) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled SBE43 oyxgen 10:37:03 11 Apr 2016 UTC: INFO: QC.py(180): Changed (3/966) 963:965 to QC_INTERPOLATED because changed temperature implies changed SBE43 oxygen 10:37:03 11 Apr 2016 UTC: INFO: aa3830_ext.py(263): Changed (124/966) 382:385 387:390 392:395 397:400 402:405 407:410 ... to QC_UNSAMPLED because unsampled aa3830 oyxgen 10:37:03 11 Apr 2016 UTC: INFO: QC.py(180): Changed (3/966) 963:965 to QC_INTERPOLATED because changed temperature implies changed optode oxygen 10:37:03 11 Apr 2016 UTC: INFO: QC.py(180): Changed (22/966) 1:11 457:462 962:966 to QC_BAD because changed salinity implies changed optode oxygen 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(3559): Finished sensor extensions data processing 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_scaleFactor type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_calTemperature type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_darkCounts type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_calinfo type should be 'c' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_calTemperature type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_maxOutput type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_darkCounts type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_scaleFactor type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_resolution type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_resolution type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_darkCounts type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_maxOutput type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_darkCounts type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_resolution type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_wavelength type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_wavelength type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_calTemperature type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_scaleFactor type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Chlorophyll_scaleFactor type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_maxOutput type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_scaleFactor type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_calinfo type should be 'c' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_wavelength type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_wavelength type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter470_wavelength type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_resolution type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Scatter700_darkCounts type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_scaleFactor type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_resolution type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_Scatter650_darkCounts type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbbfl2_CDOM_resolution type should be 'd' 10:37:03 11 Apr 2016 UTC: INFO: BaseNetCDF.py(1479): Missing metadata for sg_cal_WETLabsCalData_wlbb2fl_Chlorophyll_wavelength type should be 'd' /usr/local/basestation/BaseNetCDF.py:1519: FutureWarning: comparison to `None` will result in an elementwise object comparison in the future. if (value != None): 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4151): Dive 106: Data set size for profile, binned and kkyy files reduced by 22 points, a 2.28% reduction 10:37:03 11 Apr 2016 UTC: INFO: Base.py(1797): Backing up ./cmdfile to ./cmdfile.106 10:37:03 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_dive not found 10:37:03 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 1 10:37:03 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 1 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4486): Making mission profile name ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from info in ./p1460001.nc 10:37:03 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4487): Making mission profile ./sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc from files found in: ./ /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:59: RuntimeWarning: Mean of empty slice. warnings.warn("Mean of empty slice.", RuntimeWarning) /usr/lib64/python2.7/site-packages/numpy/core/_methods.py:71: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) 10:37:54 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(4747): max_depth_len = 182, max_depth_dive_num = 42 10:37:55 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5023): Making mission timeseries name ./sg146_CHANGE_THIS!_timeseries.nc from info in ./p1460001.nc 10:37:55 11 Apr 2016 UTC: INFO: MakeDiveProfiles.py(5024): Making mission timeseries ./sg146_CHANGE_THIS!_timeseries.nc from files found in: ./ 10:38:03 11 Apr 2016 UTC: INFO: Base.py(1064): Starting processing on .extensions 10:38:03 11 Apr 2016 UTC: INFO: Base.py(1100): Finished processing on .extensions 10:38:03 11 Apr 2016 UTC: INFO: Base.py(1989): Processed files msg: Processing complete as of 10:38:03 11 Apr 2016 UTC /home/sg146/p1460106.log /home/sg146/p1460106.eng /home/sg146/p1460106.asc /home/sg146/p1460106.pro /home/sg146/p1460106.nc /home/sg146/sg146_CHANGE_THIS!_5.0m_up_and_down_profile.nc /home/sg146/sg146_CHANGE_THIS!_timeseries.nc 10:38:03 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:38:03 11 Apr 2016 UTC: INFO: Base.py(901): Starting processing on .pagers for alerts comp 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8082269543@txt.att.net,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (8083337277@txt.att.net,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (sdrifter@soest.hawaii.edu,gps,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (seaglider@km.soest.hawaii.edu,recov,alerts) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (poulos@soest.hawaii.edu,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (gabe@hawaii.edu,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(913): Processing .pagers line (jburkitt@hawaii.edu,alerts,recov) 10:38:03 11 Apr 2016 UTC: INFO: Base.py(991): Finished processing on .pagers 10:38:03 11 Apr 2016 UTC: INFO: Base.py(874): No .ftp file found - skipping .ftp processing 10:38:03 11 Apr 2016 UTC: INFO: Base.py(2025): No .mailer file found - skipping .mailer processing 10:38:03 11 Apr 2016 UTC: INFO: Base.py(1125): Extension script ./.post_mission not found 10:38:03 11 Apr 2016 UTC: INFO: Base.py(1005): Starting processing on .urls pass 2 10:38:03 11 Apr 2016 UTC: INFO: Base.py(1041): Finished processing on .urls pass 2 10:38:03 11 Apr 2016 UTC: INFO: Base.py(2265): Finished processing 10:38:03 11 Apr 2016 UTC